| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,883,651 | C→G | 9.3% | A60G (GCC→GGC) | PP_5157 → | hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,883,651 | 0 | C | G | 9.3% | 393.3 / 24.9 | 128 | A60G (GCC→GGC) | PP_5157 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (56/60); new base G (7/5); total (63/65) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.57e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.06e-01 | |||||||||||
Only 100 of 130 total aligned reads displayed.
GTACTGATCAGTCCATTGGCTCAGGCGGAGCTGATCGACGAAATCGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAGTGAATCGCTCACAGGCGACGGCCCGCTCGATGTAAGCCTG > NC_002947/5883503‑5883799 | gTACTGATCAGTCCATTGGCTCAGGCGGAGCTGATCGACGAAATCGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGcc > 1:2104268/1‑150 (MQ=255) tACTGATCAGTCCATTGGCTCAGGCGGAGCTGATCGACGAAATCGCCGACCGGGGCGAACTGCGCATTGCCGTACTGGCCGAGAACTCGCCATACGCCTTCCAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGccc > 1:2340935/1‑150 (MQ=255) cTGATCAGTCCATTGGCTCAGGCGGAGCTGATCGACGAACTGGCGAGCCGGGGCGCACTGCGCATGGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTg > 2:84039/1‑150 (MQ=255) cTGATCAGTCCATTGGCTCAGGCGGAGCTGATCGACGAAATCGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTg > 2:121229/1‑150 (MQ=255) aGTCCATTGGCTCAGGCGGAGCTGATCGACGAAATCGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGGCCTGGCCaaa < 2:1420800/150‑2 (MQ=255) aTTGGCTCAGGCGGAGCTGATCGACGAAATCGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACCCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACt > 2:379268/1‑150 (MQ=255) cTCAGGCGGAGCTGATCGACGAAATCGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGAtt > 2:2376848/1‑150 (MQ=255) aGGCGGAGCTGATCGACGAAATCGGCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTgc < 1:2141526/150‑1 (MQ=255) gAGCTGATCGACGAAATCGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGcc < 1:845311/150‑1 (MQ=255) aGCTGATCGACGAAATCGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGTGCGCCg > 2:2350599/1‑150 (MQ=255) tGATCGACGAAATCGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGt > 1:1745726/1‑150 (MQ=255) caTCGACGAAATCGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAACCAAGACCACCACCTGACAGGGTTCGACATCGAATTT‑‑‑T‑GCCAGGCCCTGGCCAAGGAACTGGATCTGGGCGCCGCGtt > 2:2211005/2‑150 (MQ=255) aTCGACGAAATCGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTtc > 1:1174334/1‑150 (MQ=255) gacgaAATCGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTtcgtc < 2:1745726/150‑1 (MQ=255) gacgaAATCGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACCGGATTTGCGCGCCGAGTtcgtc < 2:1307773/150‑1 (MQ=255) gaAATCGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGCGTTCGTCGaa > 1:219319/1‑150 (MQ=255) gaAATCGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGaa < 2:242290/150‑1 (MQ=255) aaaTCGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAgg > 1:1611797/1‑120 (MQ=255) aaaTCGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAg < 2:1813938/150‑1 (MQ=255) aTCGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGcc > 2:1253330/1‑150 (MQ=255) cGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑ACCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGcccc < 1:235321/150‑1 (MQ=255) ccGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACAGCGAATTT‑‑‑GCGCCA‑GCCCTAGCGAATGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCgg < 1:1253330/150‑1 (MQ=255) ggCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGaa < 1:951862/150‑1 (MQ=255) gCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAg < 2:15325/104‑1 (MQ=255) gCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAg > 1:15325/1‑104 (MQ=255) atcTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTga > 1:1488092/3‑149 (MQ=255) aaCTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGc < 2:1590010/150‑1 (MQ=255) aCTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCt < 1:796828/150‑1 (MQ=255) cTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTg < 1:983173/150‑1 (MQ=255) cTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTg > 1:2240339/1‑150 (MQ=255) tGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTgg > 1:967762/1‑150 (MQ=255) gcATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCgg < 2:2240339/150‑1 (MQ=255) gcATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCgg < 2:958953/150‑1 (MQ=255) gcATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCgg < 2:967762/150‑1 (MQ=255) aTTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGaa < 1:686313/138‑1 (MQ=255) aTTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCgggg > 1:1012402/1‑149 (MQ=255) aTTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGgt < 2:245458/150‑1 (MQ=255) ttGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCgggcg < 1:217379/150‑3 (MQ=255) gCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTc < 1:121229/150‑1 (MQ=255) ccGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGcc > 2:796139/1‑107 (MQ=255) ccGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGcc < 1:796139/107‑1 (MQ=255) cAGGCCGAGACCTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGTCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGt < 1:1704634/150‑1 (MQ=255) aGGCCGAGAACTCGCAAGACGCCTTCAAGCAAGACGACCACCTGACAGG‑‑TCTTCATTGAAACGCACG‑GCCTGCGGCTGG‑TTAGGAACTGGATCTGTGAGAAGAGTTCGTCGAAGCACCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTg < 1:2350599/150‑1 (MQ=255) cgcgaACTCGCCAAACGCCTGCAAGCAAGAGGACCACCTGACAGGTTTCGCCATCGAATCT‑‑‑G‑GCCAGGCCCTGACCAAGGAACTCGATTTGCGCACCGACATGGCCGAAGCCCCGGCCACCGAAGTGCTAGCGGTAGTCGAGAGTGCCac > 2:472366/4‑149 (MQ=255) cGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCaa < 2:1328605/150‑1 (MQ=255) cGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCaa > 2:2050322/1‑150 (MQ=255) cGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCa > 2:1805643/1‑149 (MQ=255) cGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCa < 1:1805643/149‑1 (MQ=255) gagaACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTgcgc > 1:557934/1‑93 (MQ=255) gagaACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTgcgc < 2:557934/93‑1 (MQ=255) gaACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCTGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTa < 2:2044055/150‑1 (MQ=255) cTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCaa > 1:1274705/1‑144 (MQ=255) cTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGa > 1:1793631/1‑150 (MQ=255) tCGCCATACGCCTTCTAGCAATACGACCATCTGACATGTTTGTACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTActtc < 1:84039/150‑4 (MQ=255) gCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAATACGACAt > 1:723285/1‑150 (MQ=255) ccATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACagc < 2:1241968/150‑3 (MQ=255) ccATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATc < 1:472366/150‑1 (MQ=255) cATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTCCGACATCg > 1:360202/1‑150 (MQ=255) aTACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCga < 1:1911797/129‑1 (MQ=255) aTACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGc > 2:1539338/1‑150 (MQ=255) tACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTg < 1:1471311/72‑1 (MQ=255) tACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTg > 2:1471311/1‑72 (MQ=255) cGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACa > 2:535228/1‑143 (MQ=255) cGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACa < 1:535228/143‑1 (MQ=255) cGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGc > 1:82761/1‑147 (MQ=255) cGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGc < 2:82761/147‑1 (MQ=255) cGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCAtt < 2:1012402/150‑1 (MQ=255) gcaagACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTc < 1:2050322/150‑1 (MQ=255) agACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAg < 2:1958708/150‑1 (MQ=255) gacCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAGTGaa > 1:1095564/1‑150 (MQ=255) ccaccTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAGTGAATc < 1:1264110/150‑1 (MQ=255) cTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTAcc < 1:2262699/84‑1 (MQ=255) gACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTc > 2:792946/1‑135 (MQ=255) ggTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAGTGAATCGCTCACAGGc < 2:2340935/150‑1 (MQ=255) gTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAGTGAATCGCTCACAGGCg > 2:607999/1‑150 (MQ=255) gTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAGTGAATCGCTCACAGGCg > 1:301685/1‑150 (MQ=255) gACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAATGCTGGCGGGTGTCGAGAGTGGCAAGTGCGGCAGCGCGTTCACCCCGTCGAGTGAATCGCTCACAGGCGACGGc < 1:1855091/150‑1 (MQ=255) ctcATCGAATTT‑‑‑G‑GGCAGGCCATGGCCTTGGAATGATATGGGCGCCCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAGTGAATCGCTCACAGGCGACGGc < 2:1833156/148‑1 (MQ=255) aTCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAGTGAATCGCTCACAGGCGACGGCCCg > 1:2106251/1‑150 (MQ=255) aTCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCCTGTTTACCCCGTCGAGTGAATCGCTCACAGGCGACGGccag > 1:1833156/1‑148 (MQ=255) tCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGa < 1:1000051/123‑1 (MQ=255) tCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGa > 2:1000051/1‑123 (MQ=255) tCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAGTGAATCGCTCACAGGCGACGGCCCGc > 2:1887380/1‑150 (MQ=255) tCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAGTGAATCGCTCACAGGCGACGGCCCGc > 2:586271/1‑150 (MQ=255) ttcctt‑‑‑G‑GCCAGGGCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTg < 1:2213725/87‑1 (MQ=255) ttcctt‑‑‑G‑GCCAGGGCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTg > 2:2213725/5‑91 (MQ=255) gAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCgaga > 2:230670/1‑88 (MQ=255) gAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAGTGAATCGCTTACAGGCGACGGCCCGCTc > 1:340710/1‑150 (MQ=255) aTTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAGTGAATCGCTCACAGGCGACGGCCCGCTCgt > 2:2315168/1‑149 (MQ=255) tt‑‑‑G‑GCCAGGGCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTg > 1:1733945/1‑87 (MQ=255) tt‑‑‑G‑GCCAGGGCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTg < 2:1733945/87‑1 (MQ=255) tt‑‑‑G‑GCCAGGGCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCa < 1:534869/90‑1 (MQ=255) tt‑‑‑G‑GCCAGGGCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAGTGAATCGCTCATAGGCGACGGCCCGCTCGATg > 1:1168472/1‑150 (MQ=255) tt‑‑‑G‑GCCAGGGCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAGTGAATCGCTCACAGGCGACGGCCCGCTCGATg > 2:419327/1‑150 (MQ=255) tt‑‑‑G‑GCCAGGGCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAGTGAATCGCTCACAGGCGACGGCCCGCTCGATg > 1:75681/1‑150 (MQ=255) tt‑‑‑G‑GCCAGGGCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAGTGAATCGCTCACAGGCGACGGCCCGCTCGATg > 1:1031322/1‑150 (MQ=255) tt‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAGTGAATCGCTCACAGGCGACGGCCCGCTCGATg > 1:1367426/1‑150 (MQ=255) gCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTtcgtc < 1:1905561/44‑1 (MQ=255) gCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTtcgtc > 2:1905561/1‑44 (MQ=255) gCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAGTGAATCGCTCACAGGCGACGGCCCGCTCGATGTAAGCCTg > 1:226602/1‑150 (MQ=255) | GTACTGATCAGTCCATTGGCTCAGGCGGAGCTGATCGACGAAATCGCCGACCGGGGCGAACTGCGCATTGCCGTACAGGCCGAGAACTCGCCATACGCCTTCAAGCAAGACGACCACCTGACAGGTTTCGACATCGAATTT‑‑‑G‑GCCAGGCCCTGGCCAAGGAACTGGATTTGCGCGCCGAGTTCGTCGAAGCCCCGGCTACCGAAGTGCTGGCGGGTGTCGAGAGTGGCAAGTACGACATCGCATTCACCCCGTCGAGTGAATCGCTCACAGGCGACGGCCCGCTCGATGTAAGCCTG > NC_002947/5883503‑5883799 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |