| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,897,847 | C→T | 5.9% | intergenic (‑191/+43) | PP_5172 ← / ← PP_5173 | hypothetical protein/RND family transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,897,847 | 0 | C | T | 5.9% | 308.2 / 7.0 | 102 | intergenic (‑191/+43) | PP_5172/PP_5173 | hypothetical protein/RND family transporter |
| Reads supporting (aligned to +/- strand): ref base C (49/47); new base T (2/4); total (51/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.57e-01 | |||||||||||
Only 100 of 102 total aligned reads displayed.
TGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGC > NC_002947/5897706‑5897994 | tGCGCCTGTTTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCCCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:1911424/150‑1 (MQ=255)tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGTGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:2052704/150‑1 (MQ=255)tGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCCTTCGCgg < 2:2210955/150‑1 (MQ=255) cTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTaaa > 2:1635563/1‑150 (MQ=255) cTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTaaa > 1:1554089/1‑150 (MQ=255) tGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTaacc < 1:1668751/150‑3 (MQ=255) tGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAc > 1:1200742/1‑150 (MQ=255) ttGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGc > 1:751484/1‑150 (MQ=255) gAGGGCAATAGTAGTGAGGCGGGATTATGCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAGCACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTc < 1:802803/150‑1 (MQ=255) gCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATACCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg > 1:604849/1‑134 (MQ=21) gCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCgg < 2:604849/134‑1 (MQ=21) gtagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAgggg < 2:2024015/150‑1 (MQ=255) tagtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGc > 2:1845642/1‑150 (MQ=255) gttaGGCGAGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGGcgt < 2:611720/147‑3 (MQ=17) gtGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCa > 1:2324594/1‑150 (MQ=255) aGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCatat < 2:1940812/150‑1 (MQ=255) ggCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATg < 2:1463757/150‑1 (MQ=255) ggCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATg < 1:1635563/150‑1 (MQ=255) gCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATgg < 2:2324594/150‑1 (MQ=255) ttattCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTc < 2:2221204/150‑1 (MQ=255) attCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTATGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAg < 2:270224/150‑1 (MQ=255) ttgttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAgg > 1:2405258/4‑150 (MQ=255) cctggtacaagatccgcgagccgcagaaacacgcctgaaggcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg > 2:270731‑M1/54‑110 (MQ=255) cctggtacaagatccgcgagccgcagaaacacgcctgaaggcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCgg < 1:270731‑M1/57‑1 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCgt < 1:165506/150‑1 (MQ=255) ttAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCgt > 1:490645/1‑150 (MQ=255) aaTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGc > 1:2202428/1‑113 (MQ=255) aaTACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGc < 2:2202428/113‑1 (MQ=255) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑tt > 1:1672887/1‑131 (MQ=255) tttAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑tt < 2:1672887/131‑1 (MQ=255) aaGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAc > 2:769123/1‑99 (MQ=255) aaGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAAc < 1:769123/99‑1 (MQ=255) gcagaaacacgcctgaaggcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgcg < 1:1016234‑M1/56‑1 (MQ=255) gcagaaacacgcctgaaggcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgcg > 2:1016234‑M1/32‑87 (MQ=255) tataACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTAc < 2:1554089/150‑1 (MQ=255) tataACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTAc < 2:1200742/150‑1 (MQ=255) aaCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGGTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAg < 2:751484/150‑1 (MQ=255) gcctgaaggcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgc < 1:2369005‑M1/55‑1 (MQ=255) gcctgaaggcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTcgc > 2:2369005‑M1/22‑76 (MQ=255) aCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTg > 2:1411342/1‑143 (MQ=255) aCCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTg < 1:1411342/143‑1 (MQ=255) tttAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCAc > 1:1287124/1‑150 (MQ=255) tttAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCAc > 2:1083563/1‑150 (MQ=255) aggcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTc < 2:354023‑M1/53‑1 (MQ=255) aggcccatatggcccCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTc > 1:354023‑M1/16‑68 (MQ=255) aaGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTa > 2:2304649/1‑150 (MQ=255) aaGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTa > 1:338178/1‑150 (MQ=255) aaCACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAgcg > 2:1512209/1‑150 (MQ=255) acGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATgg < 1:589659/93‑1 (MQ=255) acGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATgg < 2:1735321/93‑1 (MQ=255) acGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATgg > 1:1735321/1‑93 (MQ=255) acGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATgg > 2:589659/1‑93 (MQ=255) cccCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTa < 1:2298452‑M1/136‑1 (MQ=255) cccCTGGTAGGAGCGGGTTTACCCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTa > 2:2298452‑M1/4‑139 (MQ=255) ctctGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAg < 2:2405258/150‑1 (MQ=255) tctGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAgg > 2:1323708/1‑150 (MQ=255) tctGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGCGCGATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAgg > 1:1355950/1‑150 (MQ=255) AGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACagcagc > 2:950454‑M1/1‑150 (MQ=255) GCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCg < 1:2037222‑M1/150‑1 (MQ=255) ACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAg > 1:1163837‑M1/1‑150 (MQ=255) CCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAggg > 2:743724‑M1/1‑60 (MQ=255) CCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAggg < 1:743724‑M1/60‑1 (MQ=255) CCGCGAATGCGATGGTGCATCGACCACCGTATTCGCGGGTAAACCCGCTCCTACCAGAGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt < 2:1752552‑M1/150‑1 (MQ=255) CCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAggg > 2:2395987‑M1/1‑59 (MQ=255) CCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAggg < 1:2395987‑M1/59‑1 (MQ=255) CCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTc < 1:1043817‑M1/93‑1 (MQ=255) CCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTc > 2:1043817‑M1/1‑93 (MQ=255) CCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGAt > 2:1211916‑M1/1‑99 (MQ=255) CCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGAt < 1:1211916‑M1/99‑1 (MQ=255) CCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGaa > 1:2260194‑M1/1‑132 (MQ=255) CCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGaa < 2:2260194‑M1/132‑1 (MQ=255) CCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt < 1:326095‑M1/150‑1 (MQ=255) CCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGt < 2:1017937‑M1/150‑1 (MQ=255) CCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGAGGc > 1:2260339‑M1/1‑61 (MQ=255) CGAATACGGTGGGCGATTCACCATCGCATTCGTGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGc > 2:2109029‑M1/1‑150 (MQ=255) ATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCAc > 1:1083563‑M1/1‑150 (MQ=255) ATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCAc < 1:196181‑M1/150‑1 (MQ=255) ggtggtCGATGTACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTa > 2:223938/1‑95 (MQ=255) ggtggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTa < 1:223938/95‑1 (MQ=255) ggtggtCGATGCACCATCGCATTCGCGGGGAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatg > 1:1645130/1‑150 (MQ=255) gtggtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACgatga > 1:59338/1‑150 (MQ=255) gtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTcgcg < 2:549979/82‑1 (MQ=255) gtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTa > 1:466696/1‑91 (MQ=255) gtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTa < 2:466696/91‑1 (MQ=255) gtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATcc > 2:1797741/1‑150 (MQ=255) gtCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATcc < 1:1845642/150‑1 (MQ=255) tCGATGCACCATCGCATTCGCGGGTAAACCAGCTCCT‑CCCGCAGGCTCACGGTCCTTTCAGGCGTGTTTCGGCTGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATccc > 1:1022726/1‑150 (MQ=255) gATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCg > 1:1178959/1‑123 (MQ=255) gATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCg < 2:1178959/123‑1 (MQ=255) tGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCa > 1:1164748/1‑150 (MQ=255) gCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGc > 2:2389388/1‑58 (MQ=255) gCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGc < 1:2389388/58‑1 (MQ=255) gCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCaa < 2:1287124/150‑1 (MQ=255) cACCATCGCATTCGCGGGTAAACCCGCTCCTACCATGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCTCCGGCAGGAAGAACAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAAt > 2:1475540/1‑150 (MQ=255) aCCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGCTGATCCCGCCAATc > 2:1653712/1‑150 (MQ=255) aCCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATc > 1:253821/1‑150 (MQ=255) aTCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATg < 2:490645/150‑1 (MQ=255) tCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCa < 2:4127/102‑1 (MQ=255) tCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCa > 1:4127/1‑102 (MQ=255) cGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGc < 1:1017937/150‑1 (MQ=255) | TGCGCCTGGCTTGAGGGCAATAGTAGTGAGGCGGGATTATTCTTAAAAATACTGTTTAAGAATTTTTATATAACCATTTAAGAGAACACGCCTCTGGTAGGAGCGGGTTTACCCGCGAATACGGTGGTCGATGCACCATCGCATTCGCGGGTAAACCCGCTCCTACCAGGGGCCATATGGGCC‑TTCAGGCGTGTTTCTGCGGCTCGCGGATCTTGTACCAGGCCACGTACAGCGCCGGCAGGAACAGCAGCGTCAGCAAGGTCGCCACGATGATCCCGCCAATCATGGC > NC_002947/5897706‑5897994 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |