Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 555,026 T→A 5.1% L79L (CTT→CTA rplP → 50S ribosomal protein L16

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947555,0260TA 5.1% 332.1 / 3.5 106L79L (CTT→CTArplP50S ribosomal protein L16
Reads supporting (aligned to +/- strand):  ref base T (48/51);  new base A (3/3);  total (52/54)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 114 total aligned reads displayed.

GGCGAATTCGCCCTGAAAGCTGTTGCTCGCGGTCGCCTCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGAAGCTTTCGCCCTGGCTGCTGCAAAGCTGCCTCTCGCC  >  NC_002947/554877‑555173
                                                                                                                                                     |                                                                                                                                                   
ggCGAATTCGCCCTGAAAGCTGTTGCTCGCGGTCGCCTCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCtt                                                                                                                                                     <  1:1071259/150‑1 (MQ=255)
ggCGAATTCGCCCTGAAAGCTGTTGCTCGCGGTCGCCTCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCtt                                                                                                                                                     >  2:2021510/1‑150 (MQ=255)
 gCGAATTCGCCCTGAAAGCTGTTGCTCGCGGTCGCCTCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGTTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTg                                                                                                                                                    >  1:1193268/1‑150 (MQ=255)
   gAATTCGCCCTGAAAGCTGTTGCTCGCGGTCGCCTCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAg                                                                                                                                                  <  2:2082834/150‑1 (MQ=255)
         gCCCTGAAAGCTGTTGCTCGCGGTCGCCTCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTATTCCCGGACAAGCCGATCTCCAAAAAACCTCTAGAGGTTCGt                                                                                                                                            >  2:285021/1‑150 (MQ=255)
          cccTGAAAGCTGTTGCTCGCGGTCGCCTCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTa                                                                                                                                           >  1:2137823/1‑150 (MQ=255)
           ccTGAAAGCTGTTGCTCGCGGTCGCCTCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCtt                                                                                                                                                     >  2:1459789/1‑139 (MQ=255)
           ccTGAAAGCTGTTGCTCGCGGTCGCCTCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTAt                                                                                                                                          <  2:1474233/150‑1 (MQ=255)
            cTGCAAGCTGTTGCTCGCGGTCGCCTCACCGATCGCCAGATCGAGTCCGCCCATCGTGCGGTGACCCGTCACGTTAAGCGTGGCGAGAAGATCTGGTACCGTGAGTTCCCGCACAAGCACATCCACCAAAAAACTCTTGAGGTTCGTATg                                                                                                                                         >  2:379558/1‑150 (MQ=255)
             tGAAAGCTGTTGCTCGCGGTCGCCTCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGTTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATgg                                                                                                                                        <  2:1193268/150‑1 (MQ=255)
                       tGCTCGCGGTCGCCTCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTaa                                                                                                                              >  2:951899/1‑150 (MQ=255)
                        gCTCGCGGTCGCCTCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAg                                                                                                                             <  1:1575564/150‑1 (MQ=255)
                         cTCGCGGTCGCCTCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAgg                                                                                                                            <  2:2137823/150‑1 (MQ=255)
                                tCGCCTCAGCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGGTCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAAGCTCTGTAGGTTCGTATGGGTAAAGGCAAGGGCTCCgg                                                                                                                     >  2:2282521/1‑149 (MQ=255)
                                    cTCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAgg                                                                                                                            <  1:228758/139‑1 (MQ=255)
                                    cTCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAgg                                                                                                                            >  2:228758/1‑139 (MQ=255)
                                     tCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTc                                                                                                                                              <  2:1587516/120‑1 (MQ=255)
                                     tCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTc                                                                                                                                              >  1:1587516/1‑120 (MQ=255)
                                     tCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAg                                                                                                                                  >  2:2410/1‑132 (MQ=255)
                                     tCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAg                                                                                                                                  <  1:2410/132‑1 (MQ=255)
                                     tCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAAt                                                                                                                >  2:865453/1‑150 (MQ=255)
                                     tCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAAt                                                                                                                >  2:2041573/1‑150 (MQ=255)
                                      cACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATa                                                                                                               >  2:1339714/1‑150 (MQ=255)
                                       aCCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAgg                                                                                                                            <  1:1364576/136‑1 (MQ=255)
                                       aCCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAgg                                                                                                                            >  2:1364576/1‑136 (MQ=255)
                                       aCCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATAc                                                                                                              >  2:1940839/1‑150 (MQ=255)
                                        ccGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACt                                                                                                             <  1:1940839/150‑1 (MQ=255)
                                         cGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTg                                                                                                            <  1:2140926/150‑1 (MQ=255)
                                           cTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTggg                                                                                                          <  1:2021510/150‑1 (MQ=255)
                                               ccAGATCAAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTc                                                                                                                                              >  1:1949250/1‑110 (MQ=255)
                                               ccAGATCAAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTc                                                                                                                                              <  2:1949250/110‑1 (MQ=255)
                                                cAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTAGAGGATCGTATGGGTAAAGATAAGGGCTCCGTGGAATACTGGGTTGcc                                                                                                     >  1:1364624/1‑150 (MQ=255)
                                                   aTCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATg                                                                                                                                         >  2:1818345/1‑111 (MQ=255)
                                                   aTCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATg                                                                                                                                         <  1:1818345/111‑1 (MQ=255)
                                                    tCGAGTCCGCACGTCGTGCGCTGACCCGGCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGa                                                                                                 <  1:998935/150‑1 (MQ=255)
                                                         tCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAGTACTGGGTTGCCCAGATTCAg                                                                                            >  2:2296568/1‑150 (MQ=255)
                                                         tCCGCACGTCGTGCGCTGACCCGTAACGTTAAGCGTGGCGGTAAGATCTGGGTATGTGTGTTGCCGGCCAAGCCGATCTCCCAAAAACCTATTGAGGTTCGTATGGGTAAAGGTAGGGGCTCCGTGGAATACTTGGTTGCGCAGATTCAg                                                                                            >  2:290926/1‑150 (MQ=255)
                                                            gCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTAt                                                                                                                                          >  1:1214907/1‑101 (MQ=255)
                                                            gCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTAt                                                                                                                                          <  2:1214907/101‑1 (MQ=255)
                                                            gCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCa                                                                                         <  1:1763079/150‑1 (MQ=255)
                                                            gCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCa                                                                                         >  1:1993987/1‑150 (MQ=255)
                                                            gCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCAAGAGGttttt                                                                                                                                            <  1:2152325/99‑4 (MQ=255)
                                                            gCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCAAGAGGttttt                                                                                                                                            >  2:2152325/1‑96 (MQ=255)
                                                             cACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAg                                                                                        <  2:551653/150‑1 (MQ=255)
                                                             cACGTCGTGCGCGGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAg                                                                                        <  2:1246864/150‑1 (MQ=255)
                                                              aCGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAgg                                                                                       <  1:118912/150‑1 (MQ=255)
                                                                    tGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGt                                                                                 >  2:1740198/1‑150 (MQ=255)
                                                                       gcTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCt                                                                              <  1:2041573/150‑1 (MQ=255)
                                                                        cTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTg                                                                             <  1:2013011/150‑1 (MQ=255)
                                                                        cTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTg                                                                             <  2:176954/150‑1 (MQ=255)
                                                                        cTGACCCGGCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTg                                                                             <  1:379558/150‑1 (MQ=255)
                                                                          gACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTa                                                                           <  2:2146043/150‑1 (MQ=255)
                                                                             ccGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAg                                                                                                                                  <  2:1632834/92‑1 (MQ=255)
                                                                             ccGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAg                                                                                                                                  >  1:1632834/1‑92 (MQ=255)
                                                                               gTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACgaga                                                                      <  1:958984/150‑1 (MQ=255)
                                                                                tCACGTTAAGCGTGGCGGTAAGCCGGGTATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGAt                                                                     >  1:2132771/1‑150 (MQ=255)
                                                                                  aCGTTAAGCGTGGCGGTAAGATCTGGATCCGCGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAGGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCg                                                                   >  2:201876/1‑150 (MQ=255)
                                                                                    gTTAAGCGTGGCGGTAAGGTCTGGATCCGTGTGTACCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAGGTCCTGTACGAGATCGAg                                                                 <  2:876199/150‑1 (MQ=255)
                                                                                    gTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAg                                                                 <  2:1993987/150‑1 (MQ=255)
                                                                                     ttAAGCGTGGCGCTAAAATCTAGATCTGTGTTTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAgg                                                                <  1:1135350/150‑1 (MQ=255)
                                                                                           gTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGttt                                                          >  2:2252712/1‑150 (MQ=255)
                                                                                              gCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTg                                                       <  1:1339714/150‑1 (MQ=255)
                                                                                                  tAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTAGGGGAAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAaga                                                   >  2:755720/1‑150 (MQ=255)
                                                                                                     gATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCt                                                <  1:951899/150‑1 (MQ=255)
                                                                                                        cTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATTTGTAAATGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGgc                                             <  2:2132771/150‑1 (MQ=255)
                                                                                                           gATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGcc                                                                                                     <  1:1347469/91‑1 (MQ=255)
                                                                                                           gATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGcc                                                                                                     >  2:1347469/1‑91 (MQ=255)
                                                                                                           gATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCGGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGgcgcg                                          <  1:1422771/150‑1 (MQ=255)
                                                                                                           gATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGgcgcg                                          >  2:908749/1‑150 (MQ=255)
                                                                                                             tCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGCGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACt                                                                                                             >  1:2243677/1‑81 (MQ=255)
                                                                                                               cGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGaa                                      >  1:1675305/1‑150 (MQ=255)
                                                                                                                  gtgtTCCCGGACAAGCCGATCTCCAAAAAACCACTTGAGGGTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGAAGCt                                   <  1:290926/150‑1 (MQ=255)
                                                                                                                        ccGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGAAGCTTTCGcc                             >  1:745666/1‑150 (MQ=255)
                                                                                                                                gCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAaga                                                   >  1:733078/1‑120 (MQ=255)
                                                                                                                                gCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAaga                                                   <  2:733078/120‑1 (MQ=255)
                                                                                                                                     tctcCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGaa                                      <  1:2116277/128‑1 (MQ=255)
                                                                                                                                     tctcCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGaa                                      >  2:2116277/1‑128 (MQ=255)
                                                                                                                                       tcCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACg                                                                         >  1:1034404/1‑91 (MQ=255)
                                                                                                                                       tcCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACg                                                                         <  2:1034404/91‑1 (MQ=255)
                                                                                                                                       tcCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGAAGCTTTCGCCCTGGCTGCTGCAAAg              >  2:1510632/1‑150 (MQ=255)
                                                                                                                                        ccAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGAAGCTTTCGCCCTGGCTGCTGCAAAGc             >  2:661812/1‑150 (MQ=255)
                                                                                                                                         cAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGAAg                                     >  1:1224406/1‑125 (MQ=255)
                                                                                                                                         cAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGAAGCTTTCGCCCTGGCTGGTGCAAAGCt            >  2:2215425/1‑150 (MQ=255)
                                                                                                                                         cAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGAAGCTTTCGCCCTGGCTGCTGCaaa               >  1:1618466/1‑147 (MQ=255)
                                                                                                                                         cAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGAAGCTTTCGCCCTGGCTGCTGCaaa               <  2:1618466/147‑1 (MQ=255)
                                                                                                                                         cAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGAAGCTTTCGCCCTGGCTGCTGCAAAGCt            >  2:1752926/1‑150 (MQ=255)
                                                                                                                                          aaaaaaCCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGAAGCTTTCGCCCTGGCTGCTGCAAACCTg           >  2:359652/1‑150 (MQ=255)
                                                                                                                                           acgaaCCTCAAGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAg                                                                 <  1:1754463/92‑1 (MQ=255)
                                                                                                                                           aaaaaCCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGAAGCTTTCGCCCTGGCTGCTGCAAAGCTGc          >  2:2382979/1‑150 (MQ=255)
                                                                                                                                           aaaaaCCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTAGCGCGCGAAGCTTTCGGCCGGGCTGCTGCAAAGCTGc          <  2:26305/150‑1 (MQ=255)
                                                                                                                                                 ctctTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGAAGCTTTCGCCCTGGCTGCTGCaaa               <  1:1152426/139‑1 (MQ=255)
                                                                                                                                                 ctctTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGAAGCTTTCGCCCTGGCTGCTGCaaa               >  2:1152426/1‑139 (MQ=255)
                                                                                                                                                 ctctTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGAAGCTTTCGCCCTGGCTGCTGCAAAGCTGCCTCTCg    >  2:775206/1‑150 (MQ=255)
                                                                                                                                                   ctTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGgt                                                              <  1:817529/90‑1 (MQ=255)
                                                                                                                                                   ctTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGgt                                                              >  2:817529/1‑90 (MQ=255)
                                                                                                                                                   ctTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGACGAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGAAGCTTTCGCCCTGGCTGCTGCAAAGCTGCCTCTCGcc  >  1:1267786/1‑150 (MQ=255)
                                                                                                                                                    ttGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTAc                                                                          >  1:1450668/1‑77 (MQ=255)
                                                                                                                                                    ttGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTAc                                                                          <  2:1450668/77‑1 (MQ=255)
                                                                                                                                                    ttGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACga                                                                        >  1:2163029/1‑79 (MQ=255)
                                                                                                                                                    ttGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACga                                                                        <  2:2163029/79‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
GGCGAATTCGCCCTGAAAGCTGTTGCTCGCGGTCGCCTCACCGCTCGCCAGATCGAGTCCGCACGTCGTGCGCTGACCCGTCACGTTAAGCGTGGCGGTAAGATCTGGATCCGTGTGTTCCCGGACAAGCCGATCTCCAAAAAACCTCTTGAGGTTCGTATGGGTAAAGGTAAGGGCTCCGTGGAATACTGGGTTGCCCAGATTCAGCCAGGCAAAGTCCTGTACGAGATCGAGGGTGTTTCTGAAGAGCTGGCGCGCGAAGCTTTCGCCCTGGCTGCTGCAAAGCTGCCTCTCGCC  >  NC_002947/554877‑555173

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: