Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 6,016,833 C→G 6.5% intergenic (‑93/+134) PP_5728 ← / ← PP_5267 rhs repeat‑associated core domain‑containing protein/cytochrome c5

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029476,016,8330CG 6.5% 289.6 / 8.6 95intergenic (‑93/+134)PP_5728/PP_5267rhs repeat‑associated core domain‑containing protein/cytochrome c5
Reads supporting (aligned to +/- strand):  ref base C (45/43);  new base G (4/2);  total (49/46)
Fisher's exact test for biased strand distribution p-value = 6.79e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.47e-01

TTGCGGCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCC  >  NC_002947/6016684‑6016975
                                                                                                                                                       |                                                                                                                                              
ttGCGGCTGTGTTAGACCGGCTGCATGTTGCTCGGGGCAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTc                                                                                                                                                >  2:1482247/1‑150 (MQ=255)
 tGCGGCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCa                                                                                                                                               <  2:1588949/150‑1 (MQ=255)
  gCGGCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAg                                                                                                                                              <  1:908504/150‑1 (MQ=255)
         tgtTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGAtt                                                                                                                                       <  1:1722419/150‑1 (MQ=255)
           ttCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTgg                                                                                                                                     >  2:1433568/1‑150 (MQ=255)
           ttCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATAAGAAGAGACACTTTGCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTATCATGGAATCAGG‑GTCAGCCGGATTgg                                                                                                                                     >  1:769596/1‑150 (MQ=255)
            tCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCATTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGa                                                                                                                                    <  1:967353/150‑1 (MQ=255)
            tCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGa                                                                                                                                    <  1:1433568/150‑1 (MQ=255)
                 cGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑ACAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTc                                                                                                                               <  2:2269555/150‑1 (MQ=255)
                     tGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGga                                                                                                                           <  2:19354/150‑1 (MQ=255)
                      gCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGgag                                                                                                                          <  1:316096/150‑1 (MQ=255)
                       cATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGgaga                                                                                                                         >  2:499127/1‑150 (MQ=255)
                        aTGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTATGgagag                                                                                                                        >  2:2351467/1‑149 (MQ=255)
                                 gggACAGTTATCGCCCAGATCCATTGTTAGCCACTGCTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGa                                                                                                               <  1:2060340/150‑1 (MQ=255)
                                  ggACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGAc                                                                                                              <  1:1040311/150‑1 (MQ=255)
                                    aCAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCACTAACACGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACAt                                                                                                            >  1:1254108/1‑150 (MQ=255)
                                        ttATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACa                                                                                                             <  2:1856075/145‑1 (MQ=255)
                                        ttATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACa                                                                                                             >  1:1856075/1‑145 (MQ=255)
                                         tATCGCCCAGATCCATTGTTAGCCACCACTTCACTCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGctc                                                                                                       <  1:499127/150‑1 (MQ=255)
                                           tCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTa                                                                                                     <  2:1968233/150‑1 (MQ=255)
                                             gCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTg                                                                                                                             >  2:247261/1‑124 (MQ=255)
                                             gCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTg                                                                                                                             <  1:247261/124‑1 (MQ=255)
                                             gCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGc                                                                                                   >  1:1188356/1‑150 (MQ=255)
                                              cccAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTg                                                                                                                             <  1:1548938/123‑1 (MQ=255)
                                              cccAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTg                                                                                                                             >  2:1548938/1‑123 (MQ=255)
                                                cAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTc                                                                                                                                                <  2:352964/102‑1 (MQ=255)
                                                cAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTc                                                                                                                                                >  1:352964/1‑102 (MQ=255)
                                                   aTCCATTGTTAGCTACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGggttg                                                                                             >  2:2115324/1‑150 (MQ=255)
                                                   aTCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGggttg                                                                                             <  2:452416/150‑1 (MQ=255)
                                                       aTTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGga                                                                                                                           <  1:1638612/116‑1 (MQ=255)
                                                       aTTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGga                                                                                                                           >  2:1638612/1‑116 (MQ=255)
                                                       aTTGTTAGCCACCACTTCAATCAGAAGCGCCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCCTCGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGTAGACATCCATGGACATGGCTCTAGCGGgttggttg                                                                                         >  2:745431/1‑150 (MQ=255)
                                                        ttGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGc                                                                                        >  1:649491/1‑150 (MQ=255)
                                                         tGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGc                                                                                                   <  1:2221611/138‑1 (MQ=255)
                                                         tGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGc                                                                                                   >  2:2221611/1‑138 (MQ=255)
                                                              gCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGa                                                                                                               <  2:1216581/121‑1 (MQ=255)
                                                              gCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGa                                                                                                               >  1:1216581/1‑121 (MQ=255)
                                                               ccaccaCTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGc                                                                                        >  1:460146/1‑143 (MQ=255)
                                                               ccaccaCTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGc                                                                                        <  2:460146/143‑1 (MQ=255)
                                                                 accacTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTg                                                                                                                             <  1:2030687/104‑1 (MQ=255)
                                                                 accacTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTg                                                                                                                             >  2:2030687/1‑104 (MQ=255)
                                                                      ttCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCtt                                                                          >  2:1925027/1‑150 (MQ=255)
                                                                      ttCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGATGCCTGTGCTGGACCtt                                                                          >  2:77830/1‑150 (MQ=255)
                                                                          aTCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTtctc                                                                      <  1:2344794/150‑1 (MQ=255)
                                                                          aTCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTtctc                                                                      >  2:1964159/1‑150 (MQ=255)
                                                                            cAGAAGCGTCAGTGTTCTTGAGAACCCTGAAAAATAGAACTGGTCAAACAAGCT‑G‑CCCAAACTTAGCAGGAGTTAGCCCGATTGGAGCTCCGTGAGACATCCATGGACATAGATCTAGTGGGTTTGTTGCCTGTGCTGGACCTTTCTCgg                                                                    <  1:2351467/150‑1 (MQ=255)
                                                                                      aGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACaaa                                                          >  1:2226906/1‑150 (MQ=255)
                                                                                       gtgtTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACaaaa                                                         <  2:1188356/150‑1 (MQ=255)
                                                                                        tgtTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACaaaaa                                                        >  1:2286233/1‑150 (MQ=255)
                                                                                            cttcAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGggttg                                                                                             <  1:1795013/109‑1 (MQ=255)
                                                                                            cttcAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGggttg                                                                                             >  2:1795013/1‑109 (MQ=255)
                                                                                                       tGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCAt                                                                                                                  >  1:954886/1‑77 (MQ=255)
                                                                                                       tGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCAt                                                                                                                  <  2:954886/77‑1 (MQ=255)
                                                                                                       tGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCgg                                                                    <  2:1698683/123‑1 (MQ=255)
                                                                                                       tGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCgg                                                                    >  1:1698683/1‑123 (MQ=255)
                                                                                                       tGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCa                                         >  2:2120068/1‑150 (MQ=255)
                                                                                                                 aaCTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCgg                                                                    <  2:312366/113‑1 (MQ=255)
                                                                                                                 aaCTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCgg                                                                    >  1:312366/1‑113 (MQ=255)
                                                                                                                 aaCTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGcc                               >  2:2286903/1‑150 (MQ=255)
                                                                                                                    taat‑AAAAATGCTAGTCCGCATGGAATCAGG‑CTCAGCCCGATTGGAACGGCTAGAGACATCCATGGACATGGCTCTAGCGGATTGGTTGCCTGTGCTGTAGCTTTAAAAAAAAAAAAAAAAACAAAGCCCGCCATCAACGGCGGGCCTCa                            <  2:590708/147‑1 (MQ=255)
                                                                                                                    tGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCtt                                                                                                                                <  1:995420/50‑1 (MQ=255)
                                                                                                                    tGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCtt                                                                                                                                >  2:995420/1‑50 (MQ=255)
                                                                                                                      gT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGc                                                                                        <  2:525286/88‑1 (MQ=255)
                                                                                                                      gT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGc                                                                                        >  1:525286/1‑88 (MQ=255)
                                                                                                                          aaaaTGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCaa                       <  2:1254108/150‑1 (MQ=255)
                                                                                                                            aaTGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAAtt                     <  1:1964159/150‑1 (MQ=255)
                                                                                                                              tGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCa                   >  1:451843/1‑150 (MQ=255)
                                                                                                                              tGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCACCATCAACGGCGGGCCTCATGCAATTCa                   >  1:415714/1‑150 (MQ=255)
                                                                                                                                 tAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAACCAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCt                <  1:690367/150‑1 (MQ=255)
                                                                                                                                 tAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACaaa                                                    >  1:188908/1‑114 (MQ=255)
                                                                                                                                 tAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACaaa                                                    <  2:188908/114‑1 (MQ=255)
                                                                                                                                 tAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCt                <  1:1482247/150‑1 (MQ=255)
                                                                                                                                       tcATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGc                                                                                  <  2:763837/78‑1 (MQ=255)
                                                                                                                                       tcATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGc                                                                                  >  1:763837/1‑78 (MQ=255)
                                                                                                                                       tcATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAg                                                   <  2:319306/109‑1 (MQ=255)
                                                                                                                                       tcATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAg                                                   >  1:319306/1‑109 (MQ=255)
                                                                                                                                       tcATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCAt                                           <  1:81150/117‑1 (MQ=255)
                                                                                                                                       tcATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCAt                                           >  2:81150/1‑117 (MQ=255)
                                                                                                                                        gctccaaTCGGG‑CTGAGCCTGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGTGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATg                          <  1:1498132/128‑1 (MQ=255)
                                                                                                                                        gctccaaTCGGG‑CTGAGCCTGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATg                          >  2:1498132/6‑133 (MQ=255)
                                                                                                                                        cATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGggttggt                                                                                           >  2:139459/1‑68 (MQ=255)
                                                                                                                                        cATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGggttggt                                                                                           <  1:139459/68‑1 (MQ=255)
                                                                                                                                         aTGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCg                                               <  1:875111/111‑1 (MQ=255)
                                                                                                                                         aTGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCg                                               >  2:875111/1‑111 (MQ=255)
                                                                                                                                         aTGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATca        <  1:77830/150‑1 (MQ=255)
                                                                                                                                          tccaaTCGGG‑CTGAGCCTGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAg                                                   <  1:539534/103‑1 (MQ=255)
                                                                                                                                          tccaaTCGGG‑CTGAGCCTGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAg                                                   >  2:539534/4‑106 (MQ=255)
                                                                                                                                          tcaaaTCGGG‑CTGAGCCTGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATcac       >  1:2402345/4‑150 (MQ=255)
                                                                                                                                          tGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGc                 <  1:1774239/140‑1 (MQ=255)
                                                                                                                                          tGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGc                 >  2:1774239/1‑140 (MQ=255)
                                                                                                                                          tGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATcac       >  1:2041096/1‑150 (MQ=255)
                                                                                                                                          tGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATcac       >  1:1723620/1‑150 (MQ=255)
                                                                                                                                          tGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATcac       >  1:1470967/1‑150 (MQ=255)
                                                                                                                                           ggAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGccc                                                >  2:754600/1‑108 (MQ=255)
                                                                                                                                           ggAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGccc                                                <  1:754600/108‑1 (MQ=255)
                                                                                                                                             aaTCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAAc    >  1:1689684/1‑150 (MQ=255)
                                                                                                                                              aTCGGG‑CTGAGCCTGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAAcc   >  2:2294599/1‑150 (MQ=255)
                                                                                                                                               tCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAAccc  >  1:2051016/1‑150 (MQ=255)
                                                                                                                                                       |                                                                                                                                              
TTGCGGCTGTGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCC  >  NC_002947/6016684‑6016975

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑