Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	6,016,838	C→T	6.5%	intergenic (‑98/+129)	PP_5728 ← / ← PP_5267	rhs repeat‑associated core domain‑containing protein/cytochrome c5

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	6,016,838	0	C	T	6.5%	272.8 / 6.8	93	intergenic (‑98/+129)	PP_5728/PP_5267	rhs repeat‑associated core domain‑containing protein/cytochrome c5
Reads supporting (aligned to +/- strand):  ref base C (44/42);  new base T (4/2);  total (49/44)
Fisher's exact test for biased strand distribution p-value = 6.79e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.28e-01

TGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCT  >  NC_002947/6016693‑6016986                                                                                                                                                    |                                                                                                                                                     tgtTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGAtt                                                                                                                                                  <  1:1722419/150‑1 (MQ=255)   ttCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTgg                                                                                                                                                >  2:1433568/1‑150 (MQ=255)   ttCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATAAGAAGAGACACTTTGCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTATCATGGAATCAGG‑GTCAGCCGGATTgg                                                                                                                                                >  1:769596/1‑150 (MQ=255)    tCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCATTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGa                                                                                                                                               <  1:967353/150‑1 (MQ=255)    tCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGa                                                                                                                                               <  1:1433568/150‑1 (MQ=255)         cGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑ACAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTc                                                                                                                                          <  2:2269555/150‑1 (MQ=255)             tGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGga                                                                                                                                      <  2:19354/150‑1 (MQ=255)              gCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGgag                                                                                                                                     <  1:316096/150‑1 (MQ=255)               cATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGgaga                                                                                                                                    >  2:499127/1‑150 (MQ=255)                aTGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTATGgagag                                                                                                                                   >  2:2351467/1‑149 (MQ=255)                         gggACAGTTATCGCCCAGATCCATTGTTAGCCACTGCTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGa                                                                                                                          <  1:2060340/150‑1 (MQ=255)                          ggACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGAc                                                                                                                         <  1:1040311/150‑1 (MQ=255)                            aCAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCACTAACACGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACAt                                                                                                                       >  1:1254108/1‑150 (MQ=255)                                ttATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACa                                                                                                                        <  2:1856075/145‑1 (MQ=255)                                ttATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACa                                                                                                                        >  1:1856075/1‑145 (MQ=255)                                 tATCGCCCAGATCCATTGTTAGCCACCACTTCACTCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGctc                                                                                                                  <  1:499127/150‑1 (MQ=255)                                   tCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTa                                                                                                                <  2:1968233/150‑1 (MQ=255)                                     gCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTg                                                                                                                                        <  1:247261/124‑1 (MQ=255)                                     gCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTg                                                                                                                                        >  2:247261/1‑124 (MQ=255)                                     gCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGc                                                                                                              >  1:1188356/1‑150 (MQ=255)                                      cccAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTg                                                                                                                                        <  1:1548938/123‑1 (MQ=255)                                      cccAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTg                                                                                                                                        >  2:1548938/1‑123 (MQ=255)                                           aTCCATTGTTAGCTACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGggttg                                                                                                        >  2:2115324/1‑150 (MQ=255)                                           aTCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGggttg                                                                                                        <  2:452416/150‑1 (MQ=255)                                               aTTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGga                                                                                                                                      <  1:1638612/116‑1 (MQ=255)                                               aTTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGga                                                                                                                                      >  2:1638612/1‑116 (MQ=255)                                               aTTGTTAGCCACCACTTCAATCAGAAGCGCCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCCTCGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGTAGACATCCATGGACATGGCTCTAGCGGgttggttg                                                                                                    >  2:745431/1‑150 (MQ=255)                                                ttGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGc                                                                                                   >  1:649491/1‑150 (MQ=255)                                                 tGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGc                                                                                                              <  1:2221611/138‑1 (MQ=255)                                                 tGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGc                                                                                                              >  2:2221611/1‑138 (MQ=255)                                                      gCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGa                                                                                                                          <  2:1216581/121‑1 (MQ=255)                                                      gCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGa                                                                                                                          >  1:1216581/1‑121 (MQ=255)                                                       ccaccaCTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGc                                                                                                   <  2:460146/143‑1 (MQ=255)                                                       ccaccaCTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGc                                                                                                   >  1:460146/1‑143 (MQ=255)                                                         accacTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTg                                                                                                                                        <  1:2030687/104‑1 (MQ=255)                                                         accacTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTg                                                                                                                                        >  2:2030687/1‑104 (MQ=255)                                                              ttCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCtt                                                                                     >  2:1925027/1‑150 (MQ=255)                                                              ttCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGATGCCTGTGCTGGACCtt                                                                                     >  2:77830/1‑150 (MQ=255)                                                                  aTCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTtctc                                                                                 >  2:1964159/1‑150 (MQ=255)                                                                  aTCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTtctc                                                                                 <  1:2344794/150‑1 (MQ=255)                                                                    cAGAAGCGTCAGTGTTCTTGAGAACCCTGAAAAATAGAACTGGTCAAACAAGCT‑G‑CCCAAACTTAGCAGGAGTTAGCCCGATTGGAGCTCCGTGAGACATCCATGGACATAGATCTAGTGGGTTTGTTGCCTGTGCTGGACCTTTCTCgg                                                                               <  1:2351467/150‑1 (MQ=255)                                                                              aGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACaaa                                                                     >  1:2226906/1‑150 (MQ=255)                                                                               gtgtTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACaaaa                                                                    <  2:1188356/150‑1 (MQ=255)                                                                                tgtTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACaaaaa                                                                   >  1:2286233/1‑150 (MQ=255)                                                                                    cttcAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGggttg                                                                                                        >  2:1795013/1‑109 (MQ=255)                                                                                    cttcAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGggttg                                                                                                        <  1:1795013/109‑1 (MQ=255)                                                                                               tGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCAt                                                                                                                             <  2:954886/77‑1 (MQ=255)                                                                                               tGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCAt                                                                                                                             >  1:954886/1‑77 (MQ=255)                                                                                               tGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCgg                                                                               >  1:1698683/1‑123 (MQ=255)                                                                                               tGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCgg                                                                               <  2:1698683/123‑1 (MQ=255)                                                                                               tGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCa                                                    >  2:2120068/1‑150 (MQ=255)                                                                                                         aaCTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCgg                                                                               <  2:312366/113‑1 (MQ=255)                                                                                                         aaCTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCgg                                                                               >  1:312366/1‑113 (MQ=255)                                                                                                         aaCTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGcc                                          >  2:2286903/1‑150 (MQ=255)                                                                                                            taat‑AAAAATGCTAGTCCGCATGGAATCAGG‑CTCAGCCCGATTGGAACGGCTAGAGACATCCATGGACATGGCTCTAGCGGATTGGTTGCCTGTGCTGTAGCTTTAAAAAAAAAAAAAAAAACAAAGCCCGCCATCAACGGCGGGCCTCa                                       <  2:590708/147‑1 (MQ=255)                                                                                                            tGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCtt                                                                                                                                           >  2:995420/1‑50 (MQ=255)                                                                                                            tGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCtt                                                                                                                                           <  1:995420/50‑1 (MQ=255)                                                                                                              gT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGc                                                                                                   <  2:525286/88‑1 (MQ=255)                                                                                                              gT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGc                                                                                                   >  1:525286/1‑88 (MQ=255)                                                                                                                  aaaaTGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCaa                                  <  2:1254108/150‑1 (MQ=255)                                                                                                                    aaTGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAAtt                                <  1:1964159/150‑1 (MQ=255)                                                                                                                      tGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCa                              >  1:451843/1‑150 (MQ=255)                                                                                                                      tGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCACCATCAACGGCGGGCCTCATGCAATTCa                              >  1:415714/1‑150 (MQ=255)                                                                                                                         tAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAACCAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCt                           <  1:690367/150‑1 (MQ=255)                                                                                                                         tAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACaaa                                                               <  2:188908/114‑1 (MQ=255)                                                                                                                         tAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACaaa                                                               >  1:188908/1‑114 (MQ=255)                                                                                                                         tAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCt                           <  1:1482247/150‑1 (MQ=255)                                                                                                                               tcATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGc                                                                                             <  2:763837/78‑1 (MQ=255)                                                                                                                               tcATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGc                                                                                             >  1:763837/1‑78 (MQ=255)                                                                                                                               tcATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAg                                                              >  1:319306/1‑109 (MQ=255)                                                                                                                               tcATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAg                                                              <  2:319306/109‑1 (MQ=255)                                                                                                                               tcATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCAt                                                      <  1:81150/117‑1 (MQ=255)                                                                                                                               tcATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCAt                                                      >  2:81150/1‑117 (MQ=255)                                                                                                                                gctccaaTCGGG‑CTGAGCCTGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGTGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATg                                     <  1:1498132/128‑1 (MQ=255)                                                                                                                                gctccaaTCGGG‑CTGAGCCTGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATg                                     >  2:1498132/6‑133 (MQ=255)                                                                                                                                cATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGggttggt                                                                                                      <  1:139459/68‑1 (MQ=255)                                                                                                                                cATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGggttggt                                                                                                      >  2:139459/1‑68 (MQ=255)                                                                                                                                 aTGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCg                                                          >  2:875111/1‑111 (MQ=255)                                                                                                                                 aTGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCg                                                          <  1:875111/111‑1 (MQ=255)                                                                                                                                 aTGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATca                   <  1:77830/150‑1 (MQ=255)                                                                                                                                  tccaaTCGGG‑CTGAGCCTGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAg                                                              >  2:539534/4‑106 (MQ=255)                                                                                                                                  tccaaTCGGG‑CTGAGCCTGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAg                                                              <  1:539534/103‑1 (MQ=255)                                                                                                                                  tcaaaTCGGG‑CTGAGCCTGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATcac                  >  1:2402345/4‑150 (MQ=255)                                                                                                                                  tGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGc                            <  1:1774239/140‑1 (MQ=255)                                                                                                                                  tGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGc                            >  2:1774239/1‑140 (MQ=255)                                                                                                                                  tGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATcac                  >  1:2041096/1‑150 (MQ=255)                                                                                                                                  tGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATcac                  >  1:1470967/1‑150 (MQ=255)                                                                                                                                  tGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATcac                  >  1:1723620/1‑150 (MQ=255)                                                                                                                                   ggAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGccc                                                           <  1:754600/108‑1 (MQ=255)                                                                                                                                   ggAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGccc                                                           >  2:754600/1‑108 (MQ=255)                                                                                                                                     aaTCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAAc               >  1:1689684/1‑150 (MQ=255)                                                                                                                                      aTCGGG‑CTGAGCCTGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAAcc              >  2:2294599/1‑150 (MQ=255)                                                                                                                                       tCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAAccc             >  1:2051016/1‑150 (MQ=255)                                                                                                                                                  cccGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTc   >  2:623295/1‑150 (MQ=255)                                                                                                                                                   ccGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCt  >  2:2136693/1‑150 (MQ=255)                                                                                                                                                   ccGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCt  <  2:649491/150‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     TGTTCGACCGGCTGCATGTTGCTCGGGACAGTTATCGCCCAGATCCATTGTTAGCCACCACTTCAATCAGAAGCGTCAGTGTTCTTCAGAACCCTGAAAAATAGAACTGGT‑AAAAATGCTAGTTCTCATGGAATCAGG‑CTCAGCCCGATTGGAGCTTCTGGAGACATCCATGGACATGGCTCTAGCGGGTTGGTTGCCTGTGCTGGACCTTTCTCGGGCACCACAAAAACAAAGCCCGCCATCAACGGCGGGCCTCATGCAATTCAGCTGTAAATCACAACCCGGACATTTTCT  >  NC_002947/6016693‑6016986

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑