| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 566,623 | C→T | 6.3% | intergenic (+32/+41) | bfr‑I → / ← uvrA | bacterioferritin/uvrABC excinuclease protein A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 566,623 | 0 | C | T | 6.3% | 325.1 / 7.3 | 107 | intergenic (+32/+41) | bfr‑I/uvrA | bacterioferritin/uvrABC excinuclease protein A |
| Reads supporting (aligned to +/- strand): ref base C (52/48); new base T (4/3); total (56/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
Only 100 of 108 total aligned reads displayed.
GACATCCTGCGTGCGCAGCTGGCCGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCAATGATCTGCCCACCCTTG > NC_002947/566475‑566772 | gACATCCTGCGTGCGCAGCTGGCCGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAATGCCATCGGGCTGGAAAACTACCTGCACTCCCAGATGTCCGTGATCCACAGACTCAAGTAAAAACCCCTGGCa > 2:228811/1‑150 (MQ=255) aTCCTGCGTGCGCAGCTGGCCGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGTAccg > 2:2137730/1‑149 (MQ=255) aTCCTGCGTGCGCAGCTGGCCGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑a > 2:1929202/1‑150 (MQ=255) cTGCGTGCGCAGCTGGCCGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCg < 1:270786/150‑1 (MQ=255) caccgggCCGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAggg < 1:2042628/145‑1 (MQ=255) cAGCTGGCCGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAggg < 1:2033593/150‑1 (MQ=255) cAGCGGGCCGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAggg < 1:784843/150‑1 (MQ=255) aGCTGGCCGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAgggg < 2:1455988/150‑1 (MQ=255) tGGCCGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCtt > 2:127709/1‑150 (MQ=255) tGGCCCACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCtt < 2:1257584/150‑1 (MQ=255) ggCCGACACCGAAGAAGATCACACCTACTGGCTTGCGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCttt < 1:127709/150‑1 (MQ=255) ggCCGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTTGCACC‑ATCGGTACCAGGGGCttt > 2:660079/1‑150 (MQ=255) acCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGTACCGAT‑GGTGCCAGGGGCtttta > 2:2275504/1‑144 (MQ=39) acCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGTACC‑GATGGTGCCAGGGGCtttta < 1:2275504/145‑2 (MQ=39) aagaagATCACACCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGcc > 2:563238/1‑150 (MQ=255) agaagaTCACACCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCg < 2:261871/150‑1 (MQ=255) agaagaTCACACCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCg > 1:1484696/1‑150 (MQ=255) aTCACACCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAAt > 2:1723530/1‑150 (MQ=255) acacCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACt > 1:1229412/1‑150 (MQ=255) cTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGTACC‑GATGGTGCCAGGGGCtt > 1:504356/1‑125 (MQ=39) cTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGTACC‑GATGGTGCCAGGGGCtt < 2:504356/125‑1 (MQ=39) cTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAgg > 1:1249689/1‑150 (MQ=255) cTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCAt > 1:287447/1‑128 (MQ=255) cTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCAt < 2:287447/128‑1 (MQ=255) tGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCGATACTCAGGCCCt > 1:438863/1‑150 (MQ=255) tGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCt < 1:599763/150‑1 (MQ=255) gCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTAt > 2:174909/1‑150 (MQ=255) cTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAgggg > 2:350631/1‑115 (MQ=255) cTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAgggg < 1:350631/115‑1 (MQ=255) cTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATc < 1:1929202/150‑1 (MQ=255) ttGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATcc > 2:1411210/1‑150 (MQ=255) gcagcaGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCa < 2:1032647/150‑1 (MQ=255) gcagcaGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCa > 1:1032647/1‑150 (MQ=255) cagcagGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAg < 1:1411210/150‑1 (MQ=255) agGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCGATACTCAGGCCCTATCCCGCTCCAGCAAt < 2:438863/150‑1 (MQ=255) taataaTCAAGACCATCGAGCTCTACAACTGGATGAAGTCGCAGATGTAAGATATCCACAGACTCAAGTGAAGGCCGCTCGCACC‑ATCGGTACCAGGGGCAACATTATTGCGGCGGCAATACTCAGGCGCTATCCCGCTCCAACAAAGGt > 2:2209248/6‑150 (MQ=255) ccTGATCAAGGCCATCGTGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGtt > 1:1848019/1‑150 (MQ=255) ccTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGtt > 1:463609/1‑150 (MQ=255) tCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAgg > 1:1590110/1‑150 (MQ=255) aaGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAg > 1:560820/1‑88 (MQ=255) aaGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAg < 2:560820/88‑1 (MQ=255) ggCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAAt > 1:2366413/1‑150 (MQ=255) ggCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAAt > 2:923412/1‑150 (MQ=255) gCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATg < 2:1249689/150‑1 (MQ=255) gCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTATAAGGTAATg < 2:1801236/150‑1 (MQ=255) cATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGc > 2:668905/1‑150 (MQ=255) cATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGc > 2:96785/1‑150 (MQ=255) tCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCg < 2:1356858/150‑1 (MQ=255) gtgCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGt < 2:1848019/148‑1 (MQ=255) gCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGtat > 1:2353834/1‑150 (MQ=255) gCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGtat < 1:174909/150‑1 (MQ=255) gCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGAGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGtat > 2:1165067/1‑150 (MQ=255) ggAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATg > 1:2246434/1‑150 (MQ=255) gAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGa > 1:1605614/1‑150 (MQ=255) aaaaCTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCttttt < 1:139678/81‑1 (MQ=255) aaaaCTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCttttt > 2:139678/1‑81 (MQ=255) tACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGc < 2:2393215/134‑1 (MQ=255) tACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGc > 1:2393215/1‑134 (MQ=255) tACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCtt > 2:207919/1‑150 (MQ=255) aCCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATa < 2:2169568/91‑1 (MQ=255) aCCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATa > 1:2169568/1‑91 (MQ=255) aCCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTc > 1:1633221/1‑150 (MQ=255) cTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCAt > 2:914654/1‑150 (MQ=255) tGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGcct < 2:1405949/132‑2 (MQ=255) tGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGcct > 1:1405949/1‑131 (MQ=255) gCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCAtct < 2:2398641/150‑1 (MQ=255) cAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCAtctc < 1:914654/150‑1 (MQ=255) gTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGc > 1:966125/1‑150 (MQ=255) tCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCt > 1:1943997/1‑150 (MQ=255) gCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCa < 2:966125/150‑1 (MQ=255) gCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCa < 2:2395736/150‑1 (MQ=255) gTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCtctt < 1:207919/150‑1 (MQ=255) aaGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGAGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCtcttct < 1:1165067/150‑1 (MQ=255) ttATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCAtc < 2:654644/132‑1 (MQ=255) ttATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCAtc > 1:654644/1‑132 (MQ=255) cacaGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTAcc < 1:668905/150‑1 (MQ=255) acaGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCgg < 1:215074/59‑1 (MQ=255) acaGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAAt < 2:1836061/90‑1 (MQ=255) acaGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAAt > 1:1836061/1‑90 (MQ=255) acaGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCg > 1:2044578/1‑150 (MQ=255) caGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGc < 2:2353834/150‑1 (MQ=255) aCTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAg < 1:1556751/94‑1 (MQ=255) aCTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAg > 2:1556751/1‑94 (MQ=255) aCTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAgg < 2:1229412/150‑1 (MQ=255) tCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTAc > 2:588337/1‑142 (MQ=255) tCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTAc < 1:588337/142‑1 (MQ=255) tCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCa > 2:1622160/1‑150 (MQ=255) cAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCaa < 1:923412/150‑1 (MQ=255) cAAGTAAAAGCCCCTGGCACC‑ATCGGTACAAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCAGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTTCTTCATCTAGCTCAGCTATTCTGGTGTACCGCCGGCaa > 2:2223456/1‑150 (MQ=255) aatgaaaaaGCCCCTGGTACCGAT‑GGTGCCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAg > 1:2034156/6‑146 (MQ=38) aatgaaaaaGCCCCTGGTACC‑GATGGTGCCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAg < 2:2034156/141‑1 (MQ=38) aaGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTc > 1:991388/1‑88 (MQ=255) aaGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCAAt > 1:777433/1‑150 (MQ=255) gTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCAATGa > 2:1084552/1‑150 (MQ=255) gTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCACTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCAATGa > 2:1506161/1‑150 (MQ=255) tAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCAATGAt > 1:879576/1‑150 (MQ=255) aaaGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCAATGATCt > 2:21753/1‑150 (MQ=255) cccTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCt < 1:1926419/103‑1 (MQ=255) cccTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCt > 2:1926419/1‑103 (MQ=255) cACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCAATGATCTGCCCACCCTTg > 2:1097298/1‑150 (MQ=255) | GACATCCTGCGTGCGCAGCTGGCCGACACCGAAGAAGATCACACCTACTGGCTTGAGAAGCAGCAGGGCCTGATCAAGGCCATCGGGCTGGAAAACTACCTGCAGTCGCAGATGTAAGTTATCCACAGACTCAAGTAAAAGCCCCTGGCACC‑ATCGGTACCAGGGGCTTTTTCATTGCGCCGGCAATACTCAGGCCCTATCCCGCTCCAGCAATGGTTTCAGGTAATGGCCGGTATATGACTGCTTCATCTCGCTCAGCTCTTCTGGTGTACCGCAGGCAATGATCTGCCCACCCTTG > NC_002947/566475‑566772 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |