| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 883,810 | C→A | 7.4% | intergenic (+45/‑283) | PP_0766 → / → PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 883,810 | 0 | C | A | 7.4% | 304.4 / 7.7 | 94 | intergenic (+45/‑283) | PP_0766/PP_0767 | hypothetical protein/LuxR family transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (35/52); new base A (2/5); total (37/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.00e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.96e-01 | |||||||||||
CCTTGGGATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCC > NC_002947/883663‑883954 | ccTTGGGATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGc > 1:1822430/1‑150 (MQ=255)ccTTGGGATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGc > 1:2276116/1‑150 (MQ=255) tGGGATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCgg < 2:1515304/150‑1 (MQ=255) gATGAAGAACGAAGAGAACCGTGCCTACGACTTCGGCTTCAGTGCCAGAAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCGAGCCGGGGc < 2:2306781/150‑1 (MQ=255) gATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCGAGCCGGGGc < 1:2328158/150‑1 (MQ=255) aTGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGTCGTGTGATCCCCAGAAACGCCCCGGCGAGCCGGGGc < 2:1820684/150‑1 (MQ=255) gaagaaCGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGtt > 2:2289562/1‑150 (MQ=255) aagaaCGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGttt > 2:1540682/1‑150 (MQ=255) agaaCGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCGAGCCGGGGc < 2:297669/145‑1 (MQ=255) agaaCGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCGAGCCGGGGc > 1:297669/1‑145 (MQ=255) gAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTAttt > 2:2260191/1‑150 (MQ=255) gAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTAttt > 1:2139059/1‑150 (MQ=255) gAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTAttt > 2:1367447/1‑150 (MQ=255) aaGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTc < 2:2139059/150‑1 (MQ=255) agagAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTcc < 2:2276116/150‑1 (MQ=255) gagaAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCt < 1:150254/150‑1 (MQ=255) gagaAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCt > 1:417046/1‑150 (MQ=255) gaAACGTGCCTACGACTTCGGCTTCAGTGCCGGCGAGGCCGATTTCCAGCTCGCAGCGCTGCGTCAGTCGGGTGTTCTGTACGCTGATATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCtca < 2:1609139/150‑3 (MQ=255) aCGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGAccc < 2:514134/150‑1 (MQ=255) cGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCg < 2:1654524/150‑1 (MQ=255) cGTCCCTACGACTTCGGCTTCAGTGCAATGACGGCCAATTTCCTCCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAGTCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCg < 2:420706/150‑1 (MQ=255) gTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCgg > 1:1991324/1‑150 (MQ=255) tGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCTGACACTCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑ACCGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGc < 2:675428/150‑1 (MQ=255) tGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGc < 2:417046/150‑1 (MQ=255) ccTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTc > 2:852571/1‑138 (MQ=255) ccTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTc < 1:852571/138‑1 (MQ=255) cTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCctc > 1:908448/1‑150 (MQ=255) tACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGc < 2:1478484/125‑1 (MQ=255) tACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGc > 1:1478484/1‑125 (MQ=255) ttCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCgg < 1:865869/150‑1 (MQ=255) ttCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCGAGCCGGGGCGtt > 2:407997/1‑122 (MQ=255) ttCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCGAGCCGGGGCGtt < 1:407997/122‑1 (MQ=255) tCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCggg > 2:383873/1‑150 (MQ=255) cGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGt < 1:220367/150‑1 (MQ=255) cGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGt < 1:1924579/150‑1 (MQ=255) cAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGttcaccc < 1:1367447/150‑7 (MQ=255) cAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAAccc < 2:1520882/150‑1 (MQ=255) tgcgtgCATGGCTGATTTCCAGGCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCt < 2:139080/145‑1 (MQ=255) gCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTc < 2:1991324/150‑1 (MQ=255) aGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTa < 1:2255158/150‑1 (MQ=255) gCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAAc < 2:1633991/140‑1 (MQ=255) gCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAAc > 1:1633991/1‑140 (MQ=255) aaGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCtgccg > 1:1209069/1‑146 (MQ=255) gggcGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCGATTGCCTTGCCCGGCCTCTTCGCGGGTGAACCCGCTCCTAccgcg > 1:2406653/4‑146 (MQ=38) gCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGtt > 1:1692854/1‑150 (MQ=255) tCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGt < 2:1692854/150‑1 (MQ=255) ccAGCCCGCTGTGCTGCGTCAGGCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTa < 2:799932/150‑1 (MQ=255) cAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAg > 1:2313180/1‑150 (MQ=255) aGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGc < 2:1975802/129‑1 (MQ=255) aGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGc > 1:1975802/1‑129 (MQ=255) cccGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAg < 2:1209069/150‑1 (MQ=255) ccGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGc < 2:908448/150‑1 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGCCCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTCCCGCGGTAGGAGCgg < 1:2260191/150‑1 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 2:1177067/150‑1 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 2:295819/150‑1 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 2:1822430/150‑1 (MQ=255) gCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 1:1603855/150‑1 (MQ=255) cAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCggg < 2:2313180/150‑1 (MQ=255) aGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGt < 1:383873/150‑1 (MQ=255) gcTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCa < 2:2046144/150‑1 (MQ=255) gCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCAccc < 2:930563/150‑1 (MQ=255) gTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCgg > 2:384980/1‑100 (MQ=255) gTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCgg < 1:384980/100‑1 (MQ=255) cGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑ACCGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAagag < 1:2289562/150‑1 (MQ=255) ggTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGtt > 2:1933189/1‑68 (MQ=255) ggTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGtt < 1:1933189/68‑1 (MQ=255) tATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTcc > 2:2031521/1‑107 (MQ=255) tATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTcc < 1:2031521/107‑1 (MQ=255) ttCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGc > 2:1573336/1‑126 (MQ=255) ttCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGc < 1:1573336/126‑1 (MQ=255) gCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTAc < 2:1945023/105‑1 (MQ=255) gCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTAc > 1:1945023/1‑105 (MQ=255) tAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGAcc > 2:433407/1‑73 (MQ=255) tAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGAcc < 1:433407/73‑1 (MQ=255) aCTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg > 1:1192611/1‑111 (MQ=255) aCTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 2:1192611/111‑1 (MQ=255) cTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTa < 1:1101648/103‑1 (MQ=255) cTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTa > 2:1101648/1‑103 (MQ=255) tGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACTCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTg > 1:293612/1‑150 (MQ=255) gAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg < 1:1527618/108‑1 (MQ=255) gAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCgg > 2:1527618/1‑108 (MQ=255) cGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATa < 2:293612/150‑1 (MQ=255) cGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCaa < 2:1602523/136‑1 (MQ=255) cGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCaa > 1:1602523/1‑136 (MQ=255) tgATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTcc < 1:1540682/150‑1 (MQ=255) ccAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGt > 1:186861/1‑94 (MQ=255) ccAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGt < 2:186861/94‑1 (MQ=255) cAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCggg > 1:585191/1‑92 (MQ=255) cAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCggg < 2:585191/92‑1 (MQ=255) cccGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTAc < 2:1026644/63‑1 (MQ=255) cccGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTAc > 1:1026644/1‑63 (MQ=255) cccGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCcgc > 1:1676884/1‑72 (MQ=255) cccGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCcgc < 2:1676884/72‑1 (MQ=255) cGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGCCAAGCCGCTCTTACAGCTGCCGCGATAGGTGTGGGTACACCCCCCAAGAGGCCGAGCAATGCAATCGACCTCCTTAACACCTCTCCAAACCGCCGCCCAAGca > 2:509179/1‑149 (MQ=255) | CCTTGGGATGAAGAACGAAGAGAAACGTGCCTACGACTTCGGCTTCAGTGCCAGCAAGGCCGATTTCCAGCCCGCAGCGCTGCGTCAGTCGGGTATTCGCTAAGCTGAAATCACTGAACGCCGTGTGATCCCCAG‑AACGCCCCGGCTCGCCGGGGCGTTTCTATTTCCTGACCCGGCCTCTTCGCGGGTGAACCCGCTCCTACAGGTTCCGCGGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCAAGGCAATCAACCTCCTGAATACCTCTCCAAACCCCCGCCCCAGCC > NC_002947/883663‑883954 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |