BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	940,485	C→T	5.7%	G1714S (GGC→AGC)	PP_0806 ←	surface adhesion protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	940,485	0	C	T	5.7%	324.4 / 5.9	105	G1714S (GGC→AGC)	PP_0806	surface adhesion protein
Reads supporting (aligned to +/- strand): ref base C (55/44); new base T (3/3); total (58/47)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.90e-01

Only 100 of 105 total aligned reads displayed.

GCCCGGCTGCGCGGCTGGGGCGAGGTCGATCAGGAAGGTGCCGTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTGGGCAGGCGACAGGGTGAGGCTGAACA  >  NC_002947/940339‑940631

gCCCGGCTGCGCGGCTGGGGCGAGGTCGATCAGGAAGGTGCCGTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGAc                                                                                                                                                 >  1:1972354/1‑150 (MQ=255)

  ccGGCTGCGCGGCTGGGGCGAGGTCGATCAGGAAGGTGCCGTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACgg                                                                                                                                               >  2:726616/1‑150 (MQ=255)

    ggCTGCGCGGCTGGGGCGAGGTCGATCAGGAAGGTGCCGTTGGCTCCCACAACACCCGTGCAGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCa                                                                                                                                             >  2:2083107/1‑150 (MQ=255)

     gCTGCGCGGCTGGGGCGAGGTCGATCAGGAAGGTGCCGTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCGGCGCTGACGGcct                                                                                                                                            <  1:1706390/150‑3 (MQ=255)

           cgGCTGGGGCGAGGTCGATCAGGAAGGTGCCGTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGc                                                                                                                                      >  1:483848/1‑150 (MQ=255)

            ggCTGGGGCGAGGTCGATCAGGAAGGTGCCGTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCt                                                                                                                                     <  1:1802700/150‑1 (MQ=255)

            ggCTGGGGCGAGGTCGATCAGGAAGGTGCCGTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCt                                                                                                                                     >  2:1912521/1‑150 (MQ=255)

               tGGGGCGAGGTCGATCAGGAAGGTGCCGTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTcac                                                                                                                                  <  2:1972354/150‑1 (MQ=255)

                          cGATCAGGAAGGTGCCGTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACcgggcg                                                                                                                       >  1:1130368/1‑150 (MQ=255)

                          cGATCAGGAAGGTGCCGTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACcgggcg                                                                                                                       <  1:1126748/150‑1 (MQ=255)

                           gATCAGGAAGGTGCCGTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCGAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCAgcgggcgg                                                                                                                      >  2:1768562/1‑150 (MQ=255)

                           gATCAGGAAGGTGCCGTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACcgggcgg                                                                                                                      >  1:1757848/1‑150 (MQ=255)

                           gATCAGGAAGGTGCCGTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACcgggcgg                                                                                                                      >  1:13745/1‑150 (MQ=255)

                            aTCAGGAAGGTGCCGTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACcgggcggg                                                                                                                     <  1:1822771/150‑1 (MQ=255)

                              cAGGAAGGTGCCGTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGt                                                                                                                   >  2:1634202/1‑150 (MQ=255)

                                ggAAGGTGCCGTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTaa                                                                                                                 >  1:357995/1‑150 (MQ=255)

                                 gAAGGTGCCGTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAAt                                                                                                                >  1:2045678/1‑150 (MQ=255)

                                 gAAGGTGCCGTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACCGCAATGTTGCTCACCGCACCGGGCGGGGTAAt                                                                                                                >  2:2018702/1‑150 (MQ=255)

                                          gTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGgcgc                                                                                                       >  1:2233077/1‑150 (MQ=255)

                                              gCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCg                                                                                                   >  2:147690/1‑150 (MQ=255)

                                               cTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACAGCACCGGGCGGGGTAATGTCCCGCGGATCgg                                                                                                  >  2:1118684/1‑149 (MQ=255)

                                                tCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGaa                                                                                                 >  1:1080796/1‑150 (MQ=255)

                                                tCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGaa                                                                                                 <  1:784635/150‑1 (MQ=255)

                                                tCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGaa                                                                                                 <  1:858690/150‑1 (MQ=255)

                                                   cacaACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAAtt                                                                                               >  1:2265670/1‑149 (MQ=255)

                                                   cacaACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAAtt                                                                                               <  2:2265670/149‑1 (MQ=255)

                                                   cacaACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTg                                                                                              >  2:1410494/1‑150 (MQ=255)

                                                   cacaACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTg                                                                                              >  1:308410/1‑150 (MQ=255)

                                                       acacCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAgc                                                                                          <  2:2233077/150‑1 (MQ=255)

                                                             gTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCa                                                                                    <  2:641966/150‑1 (MQ=255)

                                                                  gATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGc                                                                               >  1:1684732/1‑150 (MQ=255)

                                                                       cGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGtttc                                                                          <  1:1410494/150‑3 (MQ=255)

                                                                        ggTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGcc                                                                         <  1:1588109/150‑1 (MQ=255)

                                                                        ggTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGcc                                                                         <  2:1757848/150‑1 (MQ=255)

                                                                        ggTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGcc                                                                         >  1:1851243/1‑150 (MQ=255)

                                                                          tGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGt                                                                       <  1:2239066/150‑1 (MQ=255)

                                                                            ccACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCa                                                                     <  2:13745/150‑1 (MQ=255)

                                                                            ccACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCa                                                                     <  1:1634202/150‑1 (MQ=255)

                                                                            ccACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCa                                                                     <  1:715937/150‑1 (MQ=255)

                                                                              tcTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGc                                                                   >  2:1652346/2‑150 (MQ=255)

                                                                              aCTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGTGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGc                                                                   <  1:147690/150‑1 (MQ=255)

                                                                              aCTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCaga                                                                                  <  1:2186786/135‑1 (MQ=255)

                                                                              aCTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCaga                                                                                  >  2:2186786/1‑135 (MQ=255)

                                                                              aCTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCa                                                                     >  2:1627827/1‑148 (MQ=255)

                                                                              aCTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCa                                                                     <  1:1627827/148‑1 (MQ=255)

                                                                              aCTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGc                                                                   >  1:1657047/1‑150 (MQ=255)

                                                                                tGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTcaccgcac                                                                                                                             <  1:1405228/90‑1 (MQ=255)

                                                                                tGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTcaccgcac                                                                                                                             >  2:1405228/1‑90 (MQ=255)

                                                                                tGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCAt                                                                 >  1:2073137/1‑150 (MQ=255)

                                                                                tGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCAt                                                                 >  2:110199/1‑150 (MQ=255)

                                                                                  gCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATcc                                                               <  1:1118684/150‑1 (MQ=255)

                                                                                  gCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATcc                                                               >  2:1643463/1‑150 (MQ=255)

                                                                                         gcACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGc                                                        >  1:930280/1‑150 (MQ=255)

                                                                                         gcACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGc                                                        >  1:376428/1‑150 (MQ=255)

                                                                                           aCCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGt                                                      >  1:462266/1‑150 (MQ=255)

                                                                                           aCCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGt                                                      >  1:395708/1‑150 (MQ=255)

                                                                                             cTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGGCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGcc                                                                         >  2:1391696/1‑129 (MQ=255)

                                                                                             cTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGcc                                                                         <  1:1391696/129‑1 (MQ=255)

                                                                                             cTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTAc                                                    >  1:115060/1‑150 (MQ=255)

                                                                                             cTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTAc                                                    >  2:1203472/1‑150 (MQ=255)

                                                                                             cTCAACAGTGGCGCCGGGTTCGCCGCGACCACTCAGGACCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTAc                                                    >  1:1509537/1‑150 (MQ=255)

                                                                                              tCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATccac                                                             <  2:2254723/140‑1 (MQ=255)

                                                                                              tCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATccac                                                             >  1:2254723/1‑140 (MQ=255)

                                                                                                aaCAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTc                                                 <  2:357995/150‑1 (MQ=255)

                                                                                                  cAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGa                                               >  1:252212/1‑150 (MQ=255)

                                                                                                  cAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGa                                               <  1:1203472/150‑1 (MQ=255)

                                                                                                     tGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAggg                                            <  2:1370565/150‑1 (MQ=255)

                                                                                                         gcCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGc                                           >  1:955554/1‑147 (MQ=255)

                                                                                                               ttCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGtt                                  <  1:720153/150‑1 (MQ=255)

                                                                                                                tCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTg                                 <  2:930280/150‑1 (MQ=255)

                                                                                                                   ccgcGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGcc                              >  1:1850613/1‑150 (MQ=255)

                                                                                                                   ccgcGAACAATCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGcc                              >  2:102051/1‑150 (MQ=255)

                                                                                                                    cgcgACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCa                                                                                            >  1:2216652/1‑87 (MQ=255)

                                                                                                                    cgcgACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCa                                                                                            <  2:2216652/87‑1 (MQ=255)

                                                                                                                     gcgACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTg                            >  1:869229/1‑150 (MQ=255)

                                                                                                                       gACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTggg                          <  2:376428/150‑1 (MQ=255)

                                                                                                                        aCCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTGGGc                         <  2:483848/150‑1 (MQ=255)

                                                                                                                             tCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTGGGCAGGCg                    >  2:596984/1‑150 (MQ=255)

                                                                                                                               aGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACcgggc                                                                                                                        <  2:1616000/48‑1 (MQ=255)

                                                                                                                               aGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACcgggc                                                                                                                        >  1:1616000/1‑48 (MQ=255)

                                                                                                                                gggCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAg                                              >  2:1623570/1‑121 (MQ=255)

                                                                                                                                gggCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAg                                              <  1:1623570/121‑1 (MQ=255)

                                                                                                                                gggCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTGGGCAGGCGACa                 <  1:102051/150‑1 (MQ=255)

                                                                                                                                  gCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTGGGCAGGCGACAgg               <  1:2172901/150‑1 (MQ=255)

                                                                                                                                  gCCAGGCCGTCAGAGCCGACGGCAATGGTGCGCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTGGGCAGGCGACAgg               <  2:631810/150‑1 (MQ=255)

                                                                                                                                  acattgCCGTCGGCGCTGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTgg                           >  1:1173080/6‑138 (MQ=255)

                                                                                                                                  acattgCCGTCGGCGCTGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTgg                           <  2:1173080/133‑1 (MQ=255)

                                                                                                                                  acattgCCGTCGGCGCTGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTGGGCAGGCGACAgg               >  1:461262/6‑150 (MQ=255)

                                                                                                                                  acattgCCGTCGGCGCTGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTGGGCAGGCGACAgg               >  1:2081833/6‑150 (MQ=255)

                                                                                                                                   ccAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGc                                                                               <  1:1201984/85‑1 (MQ=255)

                                                                                                                                   ccAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGc                                                                               >  2:1201984/1‑85 (MQ=255)

                                                                                                                                   ccAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTGGGCAGGCGACAggg              >  1:1670131/1‑150 (MQ=255)

                                                                                                                                   ccAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGCCTTCGCCGTTGGCCTGGGCAGGCGACAggg              >  2:316538/1‑150 (MQ=255)

                                                                                                                                    cAGGCCGTCAGCGCCGACGGCTATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTGGGCAGGCGACAGGGt             >  2:2178994/1‑150 (MQ=255)

                                                                                                                                    cAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGTAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTGGGCAGGCGACAGGGt             >  2:1389720/1‑150 (MQ=255)

                                                                                                                                     aGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTGGGCAGGCGACAGGGTg            >  2:617383/1‑150 (MQ=255)

                                                                                                                                      ttccGTCAGCGCCGACGGCAATGTTGCTCATCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTGGGCAGGCGACAGGGTGa           <  2:395708/148‑1 (MQ=255)

                                                                                                                                      tgCCGTCGGCGCTGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTGGGCAGGCGACAGGGTGa           <  2:461262/149‑1 (MQ=255)

                                                                                                                                          gTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTGGGCAGGCGACAGGGTGAGGCt       <  2:1080796/150‑1 (MQ=255)

                                                                                                                                               cgcCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTGGGCAGGCGACAGGGTGAGGCTGAACa  <  1:832999/150‑1 (MQ=255)

GCCCGGCTGCGCGGCTGGGGCGAGGTCGATCAGGAAGGTGCCGTTGGCTCCCACAACACCCGTGCCGATCACGGTGCCACTGGCATCGCGCACCTCAACAGTGGCGCCGGGTTCGCCGCGACCGCTCAGGGCCAGGCCGTCAGCGCCGACGGCAATGTTGCTCACCGCACCGGGCGGGGTAATGTCCGGCGCATCGAATTGCAGCGGCGCAGAGGCGTTGCCGTCAGCATCCACCAAGCGTACGTCGAGGGCTTCGCCGTTGGCCTGGGCAGGCGACAGGGTGAGGCTGAACA  >  NC_002947/940339‑940631

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`