| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,149,912 | G→A | 5.8% | intergenic (‑153/+104) | PP_1008 ← / ← gapA | RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,149,912 | 0 | G | A | 5.8% | 298.2 / 6.9 | 103 | intergenic (‑153/+104) | PP_1008/gapA | RNA polymerase subunit sigma‑24/glyceraldehyde‑3‑phosphate dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base G (48/49); new base A (4/2); total (52/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.01e-01 | |||||||||||
Only 100 of 105 total aligned reads displayed.
GGGACCTGGCCGACGAAAGGTTAATGATAATGCTTATCATCCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTT > NC_002947/1149763‑1150060 | gggACCTGGCCGACGAAAGGTTAATGATAATGCTTATCATCCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTgg < 2:450786/150‑1 (MQ=255) ggACCTGGCCGACGAAAGGTTAATGATAATGCTTATCATCCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGgc < 1:1805026/150‑1 (MQ=255) gCCGACGAAAGGTTAATGATAATGCTTATCATCCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATcc < 1:394319/150‑1 (MQ=255) gacgaAAGGTTAATGATAATGCTTATCATCCATGCGGCAGGTCAACTGTGGAATTATCATGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑g < 2:527822/150‑1 (MQ=255) acgaAAGGTTAATGATAATGCTTATCATCCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGTGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑gg < 1:1163440/150‑1 (MQ=255) acgaAAGGTTAATGATAATGCTTATCATCCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑gg < 1:2144108/150‑1 (MQ=255) gAAAGGTTAATGATAATGCTTATCATCCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGG < 1:1868893‑M1/150‑1 (MQ=255) gTTAATGATAATGCTTATCATCCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCG > 2:2062940‑M1/1‑150 (MQ=255) gATAATGCTTATCATCCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCTGGGGGGAGCGGGCtt > 2:1775033/1‑150 (MQ=255) aTAATGCTTATCATCCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGc > 2:1814108/1‑150 (MQ=255) tAATGCTTATCATCCGTGCGGCAGGTCAAGTGTGGAATTATCCACCCCAGCTACAACCACGGCACAGGGCAGTCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGcc < 1:285580/150‑1 (MQ=12) cTTATCATCCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGC > 1:1540146‑M1/1‑136 (MQ=255) cTTATCATCCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGC < 2:1540146‑M1/136‑1 (MQ=255) ttATCATCCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGaa > 1:1620026/1‑150 (MQ=255) ttATCATCCGTGCGGCAAGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTTCCCGCGaa > 1:1179952/1‑150 (MQ=255) agccGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACgg > 2:1610940/3‑150 (MQ=255) tcCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCcgc < 2:810800/141‑1 (MQ=255) tcCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCcgc > 1:810800/1‑141 (MQ=255) tcCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACggg < 1:661661/150‑1 (MQ=255) ccGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGc < 1:1814108/150‑1 (MQ=255) ccGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGc < 2:1439520/150‑1 (MQ=255) gTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATc < 2:575975/115‑1 (MQ=255) gTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATc > 1:575975/1‑115 (MQ=255) tGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAACAGATGGCGCGATCCCT‑GGGGGCGCCGGCTTGCCCGCGAACACGGGGGaa < 2:94941/150‑1 (MQ=38) ccgggccaacgggcggatgctcaaggtgctggcctggtatgacaacgagtgggggttcagcaaccggatgctggacaactgcctggcgctgcaccgggctgGCTGACGCGACCCGT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAg < 1:958302‑M1/49‑1 (MQ=255) aGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGgcttgcccgcgaagccaacaccgtggtgg > 1:1993211‑M1/1‑121 (MQ=255) aaGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGACCCGT‑GTGGGAGCGGccttgcccgcgaagccaacaccgtggtggatggc > 2:2323386‑M1/1‑116 (MQ=255) gtgtGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATcc < 1:2205402/150‑1 (MQ=255) aaTTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTGTTGCTCAATTGCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCCAACACTCAGGACGCCGGTGCCATCCACCACg > 1:125910/1‑150 (MQ=25) aTTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACgg < 1:2062940/150‑1 (MQ=255) ttATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGgt > 2:1824518/1‑150 (MQ=255) tCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCtt > 1:1443143/1‑107 (MQ=255) tCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCtt < 2:1443143/107‑1 (MQ=255) cAGGAAAAGGTAAAGATTGTAGTCACTGGATGCAGTTCGCCTCATCAGCTAGCTACTGTTGTGCTCAATTTCTAACAGCGGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTg < 1:542076/150‑1 (MQ=17) ggTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGgcttgcccgcgaagccaacaccgtggtggatggcacgggcttcgcccgtgttcgcg < 2:1993211‑M1/150‑57 (MQ=255) gTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGccttgcccgcgaagccaacaccgtggtggatggcacgggcttcgcccgtgttcgcgg > 1:351104‑M1/1‑93 (MQ=255) gTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGtt > 1:2189223/1‑140 (MQ=255) gTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGtt < 2:2189223/140‑1 (MQ=255) gTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCgg > 2:2049961/1‑150 (MQ=255) gTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCgg > 1:1094394/1‑150 (MQ=255) gTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCgg < 1:1610940/150‑1 (MQ=255) gTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGATCGCAACTTTGTTGATCTATTTTTAAAAGCTGGCGCGATCACT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATACACCACGGTATTGGCttggtgg > 2:83977/1‑145 (MQ=18) ctggtatgacaacgagtgggggttcagcaaccggatgctggacaactgcctggcgctgcaccgggctgGCTGACGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCgg > 1:2362992‑M1/69‑150 (MQ=255) ctggtatgacaacgagtgggggttcagcaaccggatgctggacaactgcctggcgctgcaccgggctgGCTGACGCGACCCGT‑GTGGGAGCGGCCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCgg > 1:95482‑M1/69‑150 (MQ=255) aaaGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGc > 2:1249938/1‑150 (MQ=255) aaGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCa > 1:311329/1‑150 (MQ=255) aTTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGACCCGT‑GTGGGAGCGGccttgcccgcgaagccaacaccgtggtggatggcacgggcttcgcccgtgttcgcgggcaagc < 1:2323386‑M1/150‑64 (MQ=255) ttGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGc > 2:1446565‑M2/1‑149 (MQ=255) gacaacgagtgggggttcagcaaccggatgctggacaactgcctggcgctgcaccgggctgGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGc > 1:135328‑M1/62‑150 (MQ=255) tGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGccttgcccgcgaagccaacaccgtggtggatggcacgggcttcgcccgtgttcgcgggcaagccc < 2:351104‑M1/150‑66 (MQ=255) acaacgagtgggggttcagcaaccggatgctggacaactgcctggcgctgcaccgggctgGCTGACGCGACCCGT‑GTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCgg < 1:1472301‑M1/82‑1 (MQ=255) acaacgagtgggggttcagcaaccggatgctggacaactgcctggcgctgcaccgggctgGCTGACGCGACCCGT‑GTGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCgg > 2:1472301‑M1/61‑142 (MQ=255) tCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGccgctcc > 1:1824518‑M2/1‑143 (MQ=255) tGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCcaca < 1:2049961/150‑1 (MQ=255) gtGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTTCTCAATTTCTGCGACCTGGCGCGATCCCT‑GGGGGAGCGGGGTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCGCGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACgg < 1:264647/149‑1 (MQ=21) gttcagcaaccggatgctggacaactgcctggcgctgcaccgggctgGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACggg < 1:1190760‑M1/103‑1 (MQ=255) cGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTcg > 1:809105/1‑150 (MQ=255) gTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTcgc < 1:1991063/150‑1 (MQ=255) ttGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGt < 1:1249938/150‑1 (MQ=255) ttGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGt < 2:1007034/150‑1 (MQ=255) ttGCTTTTTTTGGGAGCAACTGTCTCGTGGCATGTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTcgcgg > 1:1642902/1‑149 (MQ=21) tGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTc > 2:1779702/1‑150 (MQ=255) gCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTca > 1:735638/1‑150 (MQ=255) accggatgctggacaactgcctggcgctgcaccgggctgGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTca > 2:1190760‑M1/40‑150 (MQ=255) accggatgctggacaactgcctggcgctgcaccgggctgGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTca > 2:1535524‑M1/40‑150 (MQ=255) tttttttGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCca < 2:2262272/134‑1 (MQ=255) tttttttGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCca > 1:2262272/1‑134 (MQ=255) tttttttGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCAGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTcagc > 2:597211/1‑150 (MQ=255) gatgctggacaactgcctggcgctgcaccgggctgGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTcagcca > 2:1107008‑M1/36‑150 (MQ=255) gAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGc > 1:4466/1‑73 (MQ=39) gAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGc < 2:4466/73‑1 (MQ=39) gCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGGCCGGTGc > 1:962297/1‑150 (MQ=255) cAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCa < 2:311329/150‑1 (MQ=255) aCTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGccttgcccgcgaagccaacaccgtggtggatggcacgggcttcgcccgtgttcgcgg < 2:1657525‑M1/105‑58 (MQ=255) aCTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGccttgcccgcgaagccaacaccgtggtggatggcacgggcttcgcccgtgttcgcgg > 1:1657525‑M1/1‑48 (MQ=255) cTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGc < 2:1149113‑M2/111‑2 (MQ=255) cTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGc > 1:1149113‑M2/1‑110 (MQ=255) tGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGGCCGCGAACACGGGCGAAGCCCGTGCCATCTACCACGGGCGTGTCTTCGCGGGCAAGGCCGCTCCCCCACGGGTCGCGTCAGCCAGCCCGGTGCAgcgc > 2:1882815/1‑150 (MQ=21) gTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGcc > 1:1631025/1‑150 (MQ=255) tCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCca > 1:376894/1‑116 (MQ=255) tCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCca < 2:376894/116‑1 (MQ=255) cTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAg < 2:1094394/150‑1 (MQ=255) gCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCACCCCGGTGCAGCGCCAGGCa < 1:1399027/150‑1 (MQ=255) tCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGgtgt > 2:477949/1‑84 (MQ=255) tCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGgtgt < 1:477949/84‑1 (MQ=255) tCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAgc < 2:2273020/140‑1 (MQ=255) tCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAgc > 1:2273020/1‑140 (MQ=255) cAATTTCTAAAAGCTGGCGCGCTCCCT‑GGGGGAGCGGGCTCGACCGCAAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGtt < 1:519256/150‑1 (MQ=255) cAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGtt < 2:382782/150‑1 (MQ=255) tttCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTcagcca < 1:897793/124‑1 (MQ=255) tttCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTcagcca > 2:897793/1‑124 (MQ=255) ttCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTc < 1:772967/113‑1 (MQ=255) ttCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTc > 2:772967/1‑113 (MQ=255) tCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGTCAGTTGTCCa < 2:532031/150‑1 (MQ=255) tCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCa < 2:1620026/150‑1 (MQ=255) tCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCa < 1:1417975/150‑1 (MQ=255) tCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCa < 2:125910/150‑1 (MQ=255) tAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGGCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGc > 1:740881/1‑150 (MQ=255) GGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCGGTGCCATCCACCAGGGTGTTGTCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGtt < 1:1113876‑M1/150‑1 (MQ=255) GGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGtt > 1:1645169‑M1/1‑150 (MQ=255) | GGGACCTGGCCGACGAAAGGTTAATGATAATGCTTATCATCCGTGCGGCAGGTCAAGTGTGGAATTATCAGGAAAAGGTAAAGATTGTAGTCACTGGATGCCGTTTGCTTTTTTTGGGAGCAACTGTCTTGCTCAATTTCTAAAAGCTGGCGCGATCCCT‑GGGGGAGCGGGCTTGCCCGCGAACACGGGCGAAGCCCGTGCCATCCACCACGGTGTTGGCTTCGCGGGCAAGGCCGCTCCCACACGGGTCGCGTCAGCCAGCCCGGTGCAGCGCCAGGCAGTTGTCCAGCATCCGGTT > NC_002947/1149763‑1150060 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |