Predicted mutation | |||||||
---|---|---|---|---|---|---|---|
evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_002947 | 1,198,622 | A→G | 6.5% | D309G (GAC→GGC) ‡ | gspE → | protein secretion protein |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_002947 | 1,198,622 | 0 | A | G | 6.5% | 320.5 / 8.8 | 108 | D309G (GAC→GGC) ‡ | gspE | protein secretion protein |
Reads supporting (aligned to +/- strand): ref base A (49/52); new base G (3/4); total (52/56) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.42e-01 |
Only 100 of 108 total aligned reads displayed.
GCCTGAACAGCCTCAACGATGGCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGCGGTAGGCGCAGTGACCCGCCTGCGCGACATGGGCAT > NC_002947/1198475‑1198769 | gCCTGAACAGCCTCAACGATGGCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGAcc > 2:4205/1‑150 (MQ=255) cAGCCTCAACGATGGCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGGTCCTGACgc < 2:2249504/150‑2 (MQ=255) cAGCCTCAACGATGGCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGt < 1:2377443/150‑1 (MQ=255) cAGCCTCAACGATGGCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGt > 2:2377443/1‑150 (MQ=255) cAGCCTCAACGATGGCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCCGCGCGCCAT‑CCTGCGTCAGGACCCTGACGt > 2:1101560/1‑150 (MQ=255) aGCCTCAACGATGGCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGGTCCTGACgca < 1:160173/150‑3 (MQ=255) gCCTCAACGATGGCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGCCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTgt < 1:1044423/150‑2 (MQ=255) cTCAACGATGGCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCTGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATc > 2:1742897/1‑150 (MQ=255) cTCAACGATGGCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATc > 1:1532392/1‑150 (MQ=255) tCAACGATGGCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGAc > 2:847794/1‑143 (MQ=255) tCAACGATGGCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGAc < 1:847794/143‑1 (MQ=255) tCAACAATGGCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCa > 1:2058739/1‑150 (MQ=255) aaCGATGGCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGa > 1:2004816/1‑145 (MQ=255) aaCGATGGCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGa < 2:2004816/145‑1 (MQ=255) tGGCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATc > 2:10403/1‑142 (MQ=255) tGGCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATc < 1:10403/142‑1 (MQ=255) ggCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGc < 2:1794770/150‑1 (MQ=255) ggCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGc < 1:1236198/150‑1 (MQ=255) ggCAGCAGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGAACCCTGACGTGATCATGCTCGGc > 1:59429/1‑150 (MQ=255) cAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGGTCCTGACgcagga > 2:1040042/1‑134 (MQ=255) cAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGGTCCTGACgcagga < 1:1040042/139‑6 (MQ=255) aGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGaa > 2:2245376/1‑150 (MQ=255) ccGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAAt > 2:1816338/1‑150 (MQ=255) ccGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGCCCCGGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAAt < 1:148896/150‑1 (MQ=255) cAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCCGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCcg > 2:974336/1‑150 (MQ=255) aaCATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCcgc > 2:53663/1‑150 (MQ=255) aaCATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCAAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCcgc < 1:1343193/150‑1 (MQ=255) aCATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGACGGGAAGCAGTCCGCCAGTGTCC‑CCTTGCGTTGTGTTTGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCcgcg < 1:45000/150‑1 (MQ=255) cATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGa > 2:1953097/1‑150 (MQ=255) aTCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGAt < 1:2002831/150‑1 (MQ=255) tCCTCACCGTCGAGGACCCGGTGGAGTACGCCAATGACGGCATGGCCCATACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATc < 1:1738176/150‑1 (MQ=255) cTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAg < 2:1851269/150‑1 (MQ=255) cTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAg < 2:1851348/150‑1 (MQ=255) tCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAgg > 2:239737/1‑150 (MQ=255) ccGTCGAGGACCCGTGGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGgaga < 1:495801/150‑1 (MQ=255) ccGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGgaga < 1:2400138/150‑1 (MQ=255) ggACCCGGTGGAGTACGCCATCTCCGGCATTGGCCAAACCGCCATCAACCCGCCTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACCTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCa < 1:2301007/150‑1 (MQ=255) ggACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCa < 1:1300424/150‑1 (MQ=255) gACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCTTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAg > 1:522426/1‑150 (MQ=255) ccGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGGGTAAATACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATc > 1:636370/1‑150 (MQ=255) ccGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATc > 1:2192891/1‑150 (MQ=255) gTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGcc > 2:766837/1‑150 (MQ=255) tACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAg < 1:987919/150‑1 (MQ=255) aCGCAATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAgg < 1:1074839/150‑1 (MQ=255) gCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGcc > 1:432332/1‑150 (MQ=255) ccATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAg > 1:2117414/1‑146 (MQ=255) ccATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAg < 2:2117414/146‑1 (MQ=255) aTCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCa > 2:19631/1‑131 (MQ=255) aTCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCa < 1:19631/131‑1 (MQ=255) aTCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGc > 1:1487081/1‑150 (MQ=255) ccGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAg > 1:1859671/1‑140 (MQ=255) ccGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAg < 2:1859671/140‑1 (MQ=255) gacATTGGCCAAACCGTCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCAcc < 1:1613333/148‑1 (MQ=255) aTTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCCCCGTGCAGGCCAGCCTCACCGGc > 1:1495609/1‑150 (MQ=255) ggCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGcc < 1:1902738/139‑1 (MQ=255) ggCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCAc < 1:4205/150‑1 (MQ=255) gCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCAcc > 2:585304/1‑150 (MQ=255) gCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGc > 2:2038520/1‑129 (MQ=255) gCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGc < 1:2038520/129‑1 (MQ=255) aTCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGGCTGCGCAGATCGACGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCg > 1:1736997/1‑150 (MQ=255) aTCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCg > 1:1461385/1‑150 (MQ=255) tCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGa > 2:1001728/1‑150 (MQ=255) cccGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCtt > 2:1436165/1‑150 (MQ=255) ccGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTg > 1:970135/1‑138 (MQ=255) ccGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTg < 2:970135/138‑1 (MQ=255) ccGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTg < 1:320888/150‑1 (MQ=255) cgcgTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGc < 1:239737/150‑1 (MQ=255) cgcgTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGc < 1:1292080/150‑1 (MQ=255) tGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCacac < 1:1001728/150‑1 (MQ=255) cGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACcaa < 2:432332/150‑1 (MQ=255) cGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACcaa < 2:1487081/150‑1 (MQ=255) cGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACcaa > 1:1475698/1‑150 (MQ=255) ggCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGAc < 2:1526970/136‑1 (MQ=255) ggCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGAc > 1:1526970/1‑136 (MQ=255) cTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAAt < 1:29111/150‑1 (MQ=255) gACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGc < 2:59429/150‑1 (MQ=255) atgTTGGCCATTGGCCTGCGCGCCAT‑CCTGCGTCAGCACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGCg < 2:2200932/148‑1 (MQ=255) aCGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATgag > 1:890930/1‑148 (MQ=255) aCGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGCg < 1:1816338/150‑1 (MQ=255) tttGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGCGGTa > 1:1054464/1‑150 (MQ=255) ttGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGCGGTAg < 1:53663/150‑1 (MQ=255) ttGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGCGGTAg < 1:1716608/150‑1 (MQ=255) tGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGCGGTAgg < 2:240800/150‑1 (MQ=255) gTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGCGGTAGGCGCAg < 2:2235031/150‑1 (MQ=255) gCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGCGGTAGGCGCAGTGa < 1:1436165/150‑1 (MQ=255) cTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATAATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGTCAGCATCACCGGCCACCTGGTGCTGTCGACCTTTCACACCGACAATGCGGTAGGCGCAGTGGcc > 1:214971/1‑150 (MQ=255) aT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGCGGTAGGCGCAGTGACCCGCCTgcgc < 2:1054464/150‑1 (MQ=255) t‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGATCTTGCACACCAACAATGCGGTAGGCGCAGTGACCCGCCTGcgcg > 1:1365298/1‑150 (MQ=255) t‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGCGGTAGGCGCAGTGACCCGCCTGcgcg < 1:766837/150‑1 (MQ=255) tcacGTCAGGGTCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGCGGTa > 2:1038594/4‑126 (MQ=255) tcacGTCAGGGTCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGCGGTa < 1:1038594/123‑1 (MQ=255) cTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGAGCGCCGTGCAGGCCAGCGTCACCGGCCACCTGGTGCTGTCGACCTTGCACACGAACAATGCGGTAGGCGCAGTGACCCGCCTGCGCGAc > 2:1092759/1‑150 (MQ=255) tGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGCGGTAGGCGCAGTGACCCGCCTGCGCGACa > 2:1757148/1‑150 (MQ=255) acGTCAGGGTCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGCGGTAGGCGCAGTGACCCGCCTGCGCGACAt > 1:952692/2‑150 (MQ=255) gTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACAcc < 2:2130995/110‑1 (MQ=255) gTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACAcc > 1:2130995/1‑110 (MQ=255) aGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGca > 2:1935589/1‑103 (MQ=255) aGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGca < 1:1935589/103‑1 (MQ=255) aGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGCGGTAGGCGCAGTGACCCGCCTGCGCGACATGGGCa > 2:584339/1‑150 (MQ=255) aGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGCGGTAGGCGCAGTGACCCGCCTGCGCGACATGGGCa > 2:723513/1‑150 (MQ=255) | GCCTGAACAGCCTCAACGATGGCAGCCGCAACATCCTCACCGTCGAGGACCCGGTGGAGTACGCCATCGCCGGCATTGGCCAAACCGCCATCAACCCGCGTGCCGGGCTGACGTTTGCCAGTGGCCTGCGCGCCAT‑CCTGCGTCAGGACCCTGACGTGATCATGCTCGGCGAAATCCGCGATCAGGAGACTGCGCAGATCGCCGTGCAGGCCAGCCTCACCGGCCACCTGGTGCTGTCGACCTTGCACACCAACAATGCGGTAGGCGCAGTGACCCGCCTGCGCGACATGGGCAT > NC_002947/1198475‑1198769 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |