| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,229,553 | G→C | 9.7% | Q909H (CAG→CAC) | PP_1072 → | leucine‑rich repeat‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,229,553 | 0 | G | C | 9.7% | 347.4 / 20.8 | 111 | Q909H (CAG→CAC) | PP_1072 | leucine‑rich repeat‑containing protein |
| Reads supporting (aligned to +/- strand): ref base G (49/51); new base C (5/6); total (54/57) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 111 total aligned reads displayed.
GCGTGGTATTCACCAAGTGTTTCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGAGAGCGTATCGGGAGTCTGCCC > NC_002947/1229406‑1229700 | gCGTGGTATTCACCAAGTGTTTCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTg < 1:866296/150‑1 (MQ=255) tATTCACCAAGTGTTTCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAg < 1:479457/150‑1 (MQ=255) aTTCACCAAGTGTTTCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAgg < 2:416872/150‑1 (MQ=255) cACCAAGTGTTTCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGAt > 2:1324045/1‑150 (MQ=255) ccAAGTGTTTCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGc > 2:1407297/1‑150 (MQ=255) cAAGTGTTTCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGcc > 2:1598432/1‑150 (MQ=255) cAAGTGTTTCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGcc > 1:969979/1‑150 (MQ=255) ttCCGACGATGACAGACGGGGAGCTACAAGCCTATCTACTTCGCATAACCACCACGTGATTGAGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑Acc > 1:1253696/1‑150 (MQ=255) tCCGACGATGACAGACGGGGAGCTAAACGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑Accc < 1:2843/150‑1 (MQ=255) ccGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGCCCGCATGTATCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCa < 2:1129382/150‑1 (MQ=255) cgacgaTGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCAc > 2:1493719/1‑150 (MQ=255) gacgaTGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCa > 1:654327/1‑140 (MQ=255) gacgaTGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCa < 2:654327/140‑1 (MQ=255) aGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCttt > 2:616392/1‑150 (MQ=255) gACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGAGGCTTTa > 1:486050/1‑150 (MQ=255) aCGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTAc < 2:280136/150‑1 (MQ=255) cGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGa < 1:2052399/141‑1 (MQ=255) cGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGa > 2:2052399/1‑141 (MQ=255) ggggAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTAcgc > 1:1422510/1‑150 (MQ=255) ggAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTAcgccg > 1:558685/1‑150 (MQ=255) gCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGc < 1:2064026/120‑1 (MQ=255) gCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGc > 2:2064026/1‑120 (MQ=255) tACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTc > 2:1824367/1‑150 (MQ=255) gatcttGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGTGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGc < 1:2308919/145‑1 (MQ=255) tCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTAc > 2:670670/1‑150 (MQ=255) tCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCACTGGCGCAgg < 1:324228/103‑1 (MQ=255) tCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCACTGGCGCAgg < 1:324435/103‑1 (MQ=255) tCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCACTGGCGCAgg > 2:324228/1‑103 (MQ=255) tCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCACTGGCGCAgg > 2:324435/1‑103 (MQ=255) cTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACt > 1:632060/1‑150 (MQ=255) gCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTTGCGCAGGGATGCCATTA‑ACCTACTTGACGCTTTTCGTCGCCGTCGTGTCGCTagatc > 2:2308919/1‑146 (MQ=255) ttGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGc < 2:711942/103‑1 (MQ=255) ttGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGc > 1:711942/1‑103 (MQ=255) cTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCtt > 2:2178850/1‑118 (MQ=255) cTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACgg < 2:763907/150‑1 (MQ=255) tCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCa > 2:369105/1‑99 (MQ=255) tCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCa < 1:369105/99‑1 (MQ=255) tCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGc < 2:1280971/150‑1 (MQ=255) aTGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGc < 1:594848/95‑1 (MQ=255) aTGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGc > 2:594848/1‑95 (MQ=255) aTGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGa > 1:1774620/1‑150 (MQ=255) tGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGaa < 1:615406/150‑1 (MQ=255) ggcgAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTggc < 2:969979/150‑1 (MQ=255) gcgAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTggcg < 2:80349/150‑1 (MQ=255) gcgAGTAGGGTCGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTggcg < 1:1273676/150‑1 (MQ=255) gAGTAGGGTTGTGGGAGCACTACAGCCACCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTggcggc > 2:1196422/1‑150 (MQ=255) gTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGgcgc < 1:749362/150‑1 (MQ=255) ggTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCC‑CTAAATTCATGGCACCGCCGTCGGGTCGCTACTGCCGTTCGGCGAAGCTGGCGGCCCAAGAt > 2:1530823/1‑150 (MQ=255) gTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGAt > 2:1700240/1‑150 (MQ=255) tgGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAAcc < 2:632060/150‑1 (MQ=255) gggAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTACTCGCGCCGCA‑GCTCTAACCTGCCTGCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACcg > 1:892576/1‑150 (MQ=255) ggAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGTCTGCGTCAGAGCCTGAGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACcga < 1:1943651/150‑1 (MQ=255) ggAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCg < 1:258735/105‑1 (MQ=255) ggAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCg > 2:258735/1‑105 (MQ=255) ggAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACcga > 1:1033960/1‑150 (MQ=255) ggAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACcga < 1:1493719/150‑1 (MQ=255) ggAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACcga < 2:1774620/150‑1 (MQ=255) gAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACcgac < 2:1033960/150‑1 (MQ=255) gAGCACCAAAGACAGCTGACGGGGCATTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACcgac < 1:532945/150‑1 (MQ=255) tACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAgg < 1:1994551/60‑1 (MQ=255) tACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAgg > 2:1994551/1‑60 (MQ=255) tACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGc < 1:2097217/65‑1 (MQ=255) tACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGc > 2:2097217/1‑65 (MQ=255) tACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGcc > 2:2102044/1‑150 (MQ=255) tACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGcc > 1:865253/1‑150 (MQ=255) tACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGcc > 1:237245/1‑150 (MQ=255) tACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGcc > 2:1521512/1‑150 (MQ=255) tACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGcc > 2:1521565/1‑150 (MQ=255) ccagcTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGa < 1:1324045/150‑1 (MQ=255) gcTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTa < 1:381043/150‑1 (MQ=255) tGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTAcg < 1:670670/150‑1 (MQ=255) tGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTAcg > 2:2224381/1‑150 (MQ=255) aCGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTAcgcg > 2:787425/1‑150 (MQ=255) ggggCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTAc > 1:2196688/1‑101 (MQ=255) ggggCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGACGCAAGATAACCGACGAGGCCGGGGACTACGCGCt > 2:577537/1‑150 (MQ=255) ggCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGa < 2:865253/150‑1 (MQ=255) cAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCTTTACGGCGAATCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGatc < 1:2102044/150‑1 (MQ=255) gTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACcgac < 2:685388/124‑1 (MQ=255) gTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACcgac > 1:685388/1‑124 (MQ=255) gcgcgcCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGc < 1:1823180/150‑1 (MQ=255) gcgcCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTa > 1:1134019/1‑61 (MQ=255) gcgcCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTa < 2:1134019/61‑1 (MQ=255) cTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGagag > 2:2221497/1‑150 (MQ=255) gTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCg < 2:2010235/141‑1 (MQ=255) gTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCg > 1:2010235/1‑141 (MQ=255) cgcaggcgcgcCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGAGAGCGTATCg < 2:2172892/143‑1 (MQ=255) agagCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGAGAGCGTATCg > 2:894341/1‑150 (MQ=255) atcccTGCGCCACTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCaa < 1:1808898/93‑1 (MQ=255) atcccTGCGCCACTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCaa > 2:1808898/4‑96 (MQ=255) ccTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGAtcatca < 2:560435/131‑1 (MQ=255) ccTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGAtcatca > 1:560435/1‑131 (MQ=255) ccTGCGCCACTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGgcgc > 1:99607/1‑91 (MQ=255) ccTGCGCCACTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGAGAGc > 2:890803/1‑140 (MQ=255) cTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGAGAGCGTATCGGGAGt < 1:1335748/150‑1 (MQ=255) tGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACcgacga > 2:2228023/1‑103 (MQ=255) tGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACcgacga < 1:2228023/103‑1 (MQ=255) ccAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGAGAGCGTATCGGGAGTCTGcc < 1:1598432/150‑1 (MQ=255) cAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAAcc < 2:2307641/93‑1 (MQ=255) cAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAAcc > 1:2307641/1‑93 (MQ=255) cAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGAGAGCGTATCGGGAGTCTGccc < 1:787425/150‑1 (MQ=255) | GCGTGGTATTCACCAAGTGTTTCCGACGATGACAGACGGGGAGCTACAAGCCTATCTGCTTGACCTCATGGAGCGGCGAGTAGGGTTGTGGGAGCACTACAGCCAGCTGACGGGGCAGTTGGCGCGCCTGCGTCAGAGCCTGCGCCAGTGGCGCAGGGATGCCAGTA‑ACCCACTGGACGCTTTACGCCGCCGTCGGGTCGCTACTGCCGTACGGCGAAGCTGGCGGCGCAAGATAACCGACGAGGCCGGGGACTACGCGCTGATCATCAGCGGAGAGCGTATCGGGAGTCTGCCC > NC_002947/1229406‑1229700 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |