| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,356,411 | G→C | 15.6% | G94A (GGC→GCC) | PP_1181 → | two‑component system response regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,356,411 | 0 | G | C | 15.6% | 235.0 / 37.4 | 96 | G94A (GGC→GCC) | PP_1181 | two‑component system response regulator |
| Reads supporting (aligned to +/- strand): ref base G (48/33); new base C (7/8); total (55/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.05e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.19e-01 | |||||||||||
ATCATCGACAGCCAGCCCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGC > NC_002947/1356263‑1356559 | agcatcGACAGCCAGCCCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGc < 1:264151/148‑1 (MQ=255) tcGACAGCCAGCCCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTgg > 1:1464187/1‑150 (MQ=255) cGACAGCCAGCCCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGATCTCAGTGATGAACTGGACCAGGTCCAGGGCCTGGa < 1:802796/150‑1 (MQ=255) gACAGCCAGCCCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGCCCTGGAc < 2:2396709/150‑1 (MQ=255) agccagccCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGCCCTGGACCTg < 1:504627/150‑1 (MQ=255) agccagccCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGCCCTGGACCTg < 2:1386171/150‑1 (MQ=255) gccagccCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTgg < 1:1062811/150‑1 (MQ=255) cagccCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGCCCAGGTCCAGGCCCTGGACCTggtc < 2:1456460/150‑3 (MQ=255) cagccCGACCTGGTGATCCTCGACCTGATGCTCCCCAGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCATGTCCAGGGCCTGGACCTGGgc < 1:680718/150‑1 (MQ=255) agccCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGgcg > 2:1135239/1‑150 (MQ=255) gccCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGgcgc < 1:2273953/150‑1 (MQ=255) cGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGCGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCcga < 2:509038/150‑1 (MQ=255) aTCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTCCGTc > 1:843879/1‑150 (MQ=255) cTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGc > 2:70221/1‑150 (MQ=255) cTCCACCTGATGCGCCCCGGCTAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGc > 2:704312/1‑150 (MQ=255) tCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCCGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCa > 1:822277/1‑150 (MQ=255) tGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCg > 2:1961313/1‑150 (MQ=255) gATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGt > 1:192368/1‑150 (MQ=255) gATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGt > 1:1697491/1‑150 (MQ=255) gATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGt < 2:1687248/150‑1 (MQ=255) tGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTgc > 2:1332150/1‑150 (MQ=255) gCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTgcg > 1:1392313/1‑150 (MQ=255) cGGCCTGGGCATCTTTCGCCTTGTGCGTCGCCAGTACCAGGGGCCGATACTCATGCTCACCGCGCGCAGTGATGAACCGGACCAGCTCCAGGGCCTGGACCTGGGCGCCCACGACTACGTCTGCAAACGCGTGCGCCCACG‑‑CTTgctgct < 2:843111/150‑1 (MQ=255) gCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTgg < 1:1591731/150‑1 (MQ=255) cTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTTCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCa > 2:1599292/1‑150 (MQ=255) tGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCAc < 1:1135239/150‑1 (MQ=255) tCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATcc > 1:1401754/1‑150 (MQ=255) tCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGAACACAGCCAGGGCCTGGACCTGGGCGCAGCCGATTACGGCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATcc > 1:1740270/1‑150 (MQ=255) ccaggTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCct > 1:1290796/4‑150 (MQ=255) gggTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCctgc > 1:19615/1‑150 (MQ=255) gcAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCcga > 2:1703262/1‑85 (MQ=255) gcAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCcga < 1:1703262/85‑1 (MQ=255) ccAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAg > 1:1780507/1‑150 (MQ=255) ccAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCAAAG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAg > 2:1397534/1‑150 (MQ=255) ccAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCGGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAg > 2:1554619/1‑150 (MQ=255) ccAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAAc > 2:1848089/1‑150 (MQ=255) ccAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAAc > 2:453128/1‑150 (MQ=255) aGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCg > 1:1005502/1‑150 (MQ=255) ggggCCGATCCTCATGCTCACCGCGCGCAGTGATGCACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGt < 2:1290796/150‑1 (MQ=255) ggcccGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTg > 1:2402158/4‑150 (MQ=255) gCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGa > 1:215837/1‑150 (MQ=255) gATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGaaa < 1:310452/140‑1 (MQ=255) gATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGaaa > 2:310452/1‑140 (MQ=255) tCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAgc > 1:1381914/1‑150 (MQ=255) aTGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGt > 2:1148493/1‑137 (MQ=255) aTGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGt < 1:1148493/137‑1 (MQ=255) aTGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAgcgc < 2:1780507/150‑1 (MQ=255) gCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCACACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCTCCGCAGCGAAACCGTGGACAGCAAGCGCCa < 1:704312/150‑1 (MQ=255) catCACTGCGCGCGGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGcc > 2:1381695/3‑112 (MQ=255) catCACTGCGCGCGGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGcc < 1:1381695/110‑1 (MQ=255) tCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAgg > 1:561889/1‑150 (MQ=255) cgcgcgCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTgg < 1:2256725/131‑1 (MQ=255) cgcgcgCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTgg > 2:2256725/1‑131 (MQ=255) cgcgcgCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCt < 1:1961313/150‑1 (MQ=255) gcgcgcAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCTCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTg < 1:1397534/150‑1 (MQ=255) gcgcgcAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTg < 1:70221/150‑1 (MQ=255) gcgcgcAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTg > 1:1286274/1‑150 (MQ=255) cgcgcAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTgg < 1:453128/150‑1 (MQ=255) cAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTAGACAGCAAGCGCCAGGTCCTGGcgct < 2:822277/150‑4 (MQ=255) gatgaACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGt > 2:226618/1‑150 (MQ=255) atgaACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCtgctgc > 2:751505/1‑102 (MQ=255) atgaACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCtgctgc < 1:751505/102‑1 (MQ=255) atgaACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTg < 2:1401754/150‑1 (MQ=255) atgaACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTg > 2:311293/1‑150 (MQ=255) aaCTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCt < 1:39761/48‑1 (MQ=255) aaCTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCt > 2:39761/1‑48 (MQ=255) aaCTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTgcgc > 2:153659/1‑150 (MQ=255) aCTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCt > 1:1288186/1‑150 (MQ=255) aCTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGCGCGCCAACG‑‑CTTACCGGTGGATCATGTCCATGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCt > 1:1496856/1‑150 (MQ=255) cTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTg > 1:93265/1‑150 (MQ=255) cTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCAACGAACCGGCTTCT‑TCGCCT‑TCGTGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTg > 2:1891777/1‑150 (MQ=255) tGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAATCCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCTCTGc < 2:1697491/150‑1 (MQ=255) tGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGc > 2:1117590/1‑150 (MQ=255) ggACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGcc < 1:1354959/59‑1 (MQ=255) ggACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGcc > 2:1354959/1‑59 (MQ=255) ccAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTga < 1:1892912/146‑2 (MQ=255) ccAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGc > 2:1892912/1‑146 (MQ=255) ccAGGTCCAGGCCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTgg < 2:78325/110‑1 (MQ=255) ccAGGTCCAGGCCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTgg > 1:78325/1‑110 (MQ=255) ccAGGTCCAGGCCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTAt > 2:2249477/1‑150 (MQ=255) ccAGGTCCAGGCCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTAt > 2:720178/1‑150 (MQ=255) cAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAgcgc > 1:480342/1‑120 (MQ=255) cAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAgcgc < 2:480342/120‑1 (MQ=255) cAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATc < 2:2402158/150‑1 (MQ=255) cAGGTCCAGGCCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCgg > 2:1842279/1‑137 (MQ=255) cAGGTCCAGGCCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCgg < 1:1842279/137‑1 (MQ=255) cAGGTCCAGGCCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCCGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATc > 2:1438019/1‑150 (MQ=255) aGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTgg < 1:813475/129‑1 (MQ=255) aGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTgg > 2:813475/1‑129 (MQ=255) aGGTCCAGGCCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCg < 2:1858178/135‑1 (MQ=255) aGGTCCAGGCCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCg > 1:1858178/1‑135 (MQ=255) ggTCCAGGCCCTGGACCTGGTCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTgcgc < 1:1774497/91‑1 (MQ=255) ggTCCAGGCCCTGGACCTGGTCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTgcgc > 2:1774497/1‑91 (MQ=255) cAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAAc > 2:290506/1‑150 (MQ=255) aGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAAcc < 2:1464187/150‑1 (MQ=255) aGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAAcc > 1:2251497/1‑150 (MQ=255) gggCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAg < 1:283260/73‑1 (MQ=255) gggCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAg > 2:283260/1‑73 (MQ=255) ggCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGc > 1:1304023/1‑150 (MQ=255) ggCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAAGACCTGGCCTTCGATGCGCAGCGTATCGACAACCGc > 2:1516472/1‑150 (MQ=255) | ATCATCGACAGCCAGCCCGACCTGGTGATCCTCGACCTGATGCTCCCCGGCGAGGACGGCCTGAGCATCTGCCGCCGGGTGCGCAGCCAGTACCAGGGGCCGATCCTCATGCTCACCGCGCGCAGTGATGAACTGGACCAGGTCCAGGGCCTGGACCTGGGCGCCGACGACTACGTCTGCAAACCCGTGCGCCCACG‑‑CTTGCTGCTGGCACGTATCCAGGCCCTGCTGCGCCGCAGCGAAACCGTGGACAGCAAGCGCCAGGACCTGGCCTTCGGTGCGCTGCGTATCGACAACCGC > NC_002947/1356263‑1356559 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |