Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,534,931 T→C 10.9% intergenic (+80/‑103) secA → / → argJ protein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,534,9310TC10.9% 299.5 / 19.2 107intergenic (+80/‑103)secA/argJprotein translocase subunit SecA/glutamate N‑acetyltransferase/amino acid acetyltransferase
Reads supporting (aligned to +/- strand):  ref base T (51/44);  new base C (7/5);  total (58/49)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.12e-01

Only 100 of 108 total aligned reads displayed.

GGGCCGCAACGAGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGCCCACCCTGCACCCGGTTCCG  >  NC_002947/1534782‑1535078
                                                                                                                                                     |                                                                                                                                                   
gggCCGCAACGAGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCt                                                                                                                                                     >  2:2161802/1‑150 (MQ=255)
 ggCCGCAACGAGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTTCCACAGGTACCGCGCTc                                                                                                                                                    <  2:1234922/150‑1 (MQ=255)
  gCCGCAACGAGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCg                                                                                                                                                   >  1:51537/1‑150 (MQ=255)
      cAACGAGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCa                                                                                                                                               <  2:526152/150‑1 (MQ=255)
       aaCGAGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCAt                                                                                                                                              >  1:2031486/1‑150 (MQ=255)
        aCGAGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCCCGTCCATg                                                                                                                                             >  2:1489366/1‑150 (MQ=255)
           aGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAAc                                                                                                                                          <  1:1352620/150‑1 (MQ=255)
                         ggTTCGGGCAAGAAGTTCAAGCATTGCCACGGTCAGATCTAGTGATCTGAACCTTACGTTGTACAGGCACGCCGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTtg                                                                                                                            <  1:1853077/150‑1 (MQ=255)
                          gTTCGGGCAAGAAGTTCAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTTGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTtgt                                                                                                                           >  2:237864/1‑150 (MQ=255)
                          gTTCGGGCAAGAAGTTCAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTtgt                                                                                                                           <  1:1888335/150‑1 (MQ=255)
                           ttcgatcAAGAATTTGAATCTTGGGCACGGTGAGCTCTAGTGATCTCAACCTTAGGTCGTACAAGCCGGTGGTCGCTTTCCGGCCTTTTCGCAAGACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTtgtg                                                                                                                          <  2:1033231/144‑1 (MQ=255)
                            tCGGGCAAGAAGTTCAAGCATTGCCACGGTCAGATCGTGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTgg                                                                                                                         <  2:1398286/150‑1 (MQ=255)
                            tCGGGCAAGAAGTTCAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTgg                                                                                                                         <  1:1616296/150‑1 (MQ=255)
                            tCGGGCAAGAAGTTCAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTgg                                                                                                                         <  2:51537/150‑1 (MQ=255)
                              gggCAAGAAGTTCAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCCCGTTCATGGACGAgcgc                                                                                                                                    <  2:358600/137‑1 (MQ=39)
                                  aagaagTTCAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCTTCCATGAACGGGCGCGATCCTTGTGGGggcgg                                                                                                                   >  1:12087/1‑150 (MQ=255)
                                   agaagTTCAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGggcggc                                                                                                                  <  2:732248/150‑1 (MQ=255)
                                    gaagTTCAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGAGGGGGCGGcc                                                                                                                 >  2:1357515/1‑150 (MQ=255)
                                      agTTCACGCATTGCCACTGTCAGATCGAGTGATCTGAACCTTACGTTGTCCAAGCCTGGGGTCGCTTTGCGGCCCTCTCGCAACACAAGGCCGCTCCCACAGGTACCGCGATCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCtt                                                                                                               <  1:317075/150‑1 (MQ=255)
                                        ttCAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCATCGCGACACAAGGCCGCCCCCACAAGGATCGCGCCCGTTCATGGACGAGCGCGGTACCTGTGGGagcg                                                                                                                    <  2:1704495/142‑1 (MQ=9)
                                        ttCAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCATCGCGACACAAGGCCGCCCCCACAAGGATCGCGCCCGTTCATGGACGAGCGCGGTACCTGTGGGagcg                                                                                                                    >  1:1704495/1‑142 (MQ=9)
                                          cAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTc                                                                                                                                                    >  2:2323389/1‑109 (MQ=255)
                                          cAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTc                                                                                                                                                    <  1:2323389/109‑1 (MQ=255)
                                           aaGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTc                                                                                                          >  1:925075/1‑150 (MQ=255)
                                                    cACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATgggg                                                                                                 >  1:387539/1‑150 (MQ=255)
                                                             aTCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGAGGCCTTGTGTCGCGATGGGGTGCGAAGCg                                                                                        >  2:2363516/1‑150 (MQ=255)
                                                              tCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTtgt                                                                                                             <  2:2192005/128‑1 (MQ=255)
                                                              tCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTtgt                                                                                                             >  1:2192005/1‑128 (MQ=255)
                                                              tCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCgg                                                                                       <  1:615935/150‑1 (MQ=255)
                                                               cGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGc                                                                                      <  1:1111804/150‑1 (MQ=255)
                                                                gAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCGCCCACAAGGATCGCGCCCGTTCATGGACGAGCGCGGTACCTGTGGGagcggc                                                                                                                  >  1:1878239/1‑121 (MQ=14)
                                                                gAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCGCCCACAAGGATCGCGCCCGTTCATGGACGAGCGCGGTACCTGTGGGagcggc                                                                                                                  <  2:1878239/121‑1 (MQ=9)
                                                                 aGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGccc                                                                                    >  1:797569/1‑150 (MQ=255)
                                                                     aTCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCttt                                                                                >  1:853735/1‑150 (MQ=255)
                                                                      tCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCACCACAAGGCGGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTTTCGCGATGGGGTGCGAATCGGccccaggc                                                                               >  2:251050/1‑146 (MQ=255)
                                                                       cTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCttttt                                                                              <  1:1812761/150‑1 (MQ=255)
                                                                        tGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGGGCTGCTCTATAAAAGGGCGCTATCCGTGTGGGTGCGGCCTTGTGTTCCCAGGGTTACCGAAGCGGCGCCTTTTTc                                                                             >  1:43853/1‑150 (MQ=25)
                                                                        tGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATc                                                                                                                                <  2:2124608/99‑1 (MQ=255)
                                                                        tGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATc                                                                                                                                >  1:2124608/1‑99 (MQ=255)
                                                                              ttACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGggcggc                                                                                                                  >  1:1577146/1‑107 (MQ=255)
                                                                              ttACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGggcggc                                                                                                                  <  2:1577146/107‑1 (MQ=255)
                                                                              ttACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGAcatc                                                                       >  1:2383377/1‑150 (MQ=255)
                                                                                  gTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCg                                                                   >  2:836641/1‑150 (MQ=255)
                                                                                  gTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCg                                                                   >  1:1193995/1‑150 (MQ=255)
                                                                                  gTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCg                                                                   >  2:1896274/1‑150 (MQ=255)
                                                                                       aCAAGCCTGGGGTCGCTTTGCGGCCCTTTCGAAACAAAAAAAGGCTAAAAAAATTAAGGCGGTCGTCCATTTACTGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGttttt                                                              >  1:658113/1‑150 (MQ=255)
                                                                                         aaGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGgcgc                                                                                                                                    <  1:1054154/78‑1 (MQ=255)
                                                                                         aaGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGgcgc                                                                                                                                    >  2:1054154/1‑78 (MQ=255)
                                                                                         aaGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTgg                                                                                                                         <  2:1712203/89‑1 (MQ=255)
                                                                                         aaGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTgg                                                                                                                         >  1:1712203/1‑89 (MQ=255)
                                                                                           gCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTa                                                          <  1:2161802/150‑1 (MQ=255)
                                                                                            ccTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAg                                                         >  1:824564/1‑150 (MQ=255)
                                                                                              tGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGa                                                       <  2:853735/150‑1 (MQ=255)
                                                                                                     gCTTTGCGGCCCTTTCGCAACAAAAGGCCGCTCCCACGGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGctct                                                <  2:869420/150‑1 (MQ=255)
                                                                                                         tGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGGCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATg                                            <  1:1348020/150‑1 (MQ=255)
                                                                                                            ggCCCTTTCGCAACACAAGGCCACTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCGCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCt                                         >  2:1103001/1‑150 (MQ=255)
                                                                                                             gCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGgc                                                                                                                                      <  1:1139324/56‑1 (MQ=255)
                                                                                                             gCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGgc                                                                                                                                      >  2:1139324/1‑56 (MQ=255)
                                                                                                                 tttCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTc                                                                                                          >  2:834115/1‑80 (MQ=255)
                                                                                                                 tttCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCCTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGttgg                                    >  1:1189251/1‑150 (MQ=255)
                                                                                                                     gCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGtttt                                                               >  1:2204498/1‑119 (MQ=255)
                                                                                                                     gCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGtttt                                                               <  2:2204498/119‑1 (MQ=255)
                                                                                                                     gCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACAACATCGGTGTTTCTAGGAGCGCTCTAATGGCTGttggtctt                                >  2:1599422/1‑150 (MQ=255)
                                                                                                                     gCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCGTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGttggtctt                                >  1:531149/1‑150 (MQ=255)
                                                                                                                      cAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCAGGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGttggtcttg                               >  2:1389100/1‑150 (MQ=255)
                                                                                                                       gacacAAGGCCGCCCCCACAAGGATCGCGCCCGTTCATGGACGAGCGCGGTACCTGTGGGAGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGttggtcttgg                              >  1:1877885/2‑150 (MQ=17)
                                                                                                                       aaCACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGttggtcttgg                              <  2:1302466/150‑1 (MQ=255)
                                                                                                                       aaCACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGttggtcttgg                              <  2:387539/150‑1 (MQ=255)
                                                                                                                       aaCACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGttggtcttgg                              >  1:583750/1‑150 (MQ=255)
                                                                                                                         cacaAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAg                                                         <  1:1315502/121‑1 (MQ=255)
                                                                                                                           caAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCt                          <  1:836641/150‑1 (MQ=255)
                                                                                                                            aaGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCtt                         >  2:1668124/1‑150 (MQ=255)
                                                                                                                            aaGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCAGCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCtt                         >  2:1739132/1‑150 (MQ=255)
                                                                                                                            aaGGCCGCCCCCACAAGGATCGCGCCCGTTCATGGACGAGCGCGGTACCTGTGGGAGCGGCCTTGTGTTGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTaa                                              >  1:1732761/1‑129 (MQ=2)
                                                                                                                             aGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGTGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCttt                        >  2:247881/1‑150 (MQ=255)
                                                                                                                             aGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCttt                        <  1:237864/150‑1 (MQ=255)
                                                                                                                              ggCCGCTCCCAACGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTg                       >  2:349592/1‑150 (MQ=255)
                                                                                                                               gCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGc                      >  1:981062/1‑150 (MQ=255)
                                                                                                                                 cGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGccc                    <  2:583750/150‑1 (MQ=255)
                                                                                                                                   cTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGCCCAc                  <  1:51370/150‑1 (MQ=255)
                                                                                                                                      ccACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGcc                                                                                     >  2:1826855/1‑80 (MQ=255)
                                                                                                                                      ccACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGcc                                                                                     <  1:1826855/80‑1 (MQ=255)
                                                                                                                                      ccACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGCCCACCCt               <  1:699117/150‑1 (MQ=255)
                                                                                                                                      ccACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGCCCACCCt               >  2:1187998/1‑150 (MQ=255)
                                                                                                                                        acaGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGAcatca                                                                      >  1:766470/1‑93 (MQ=255)
                                                                                                                                        acaGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGAcatca                                                                      <  2:766470/93‑1 (MQ=255)
                                                                                                                                         caGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGCCCACCCTGCa            >  1:2005406/1‑150 (MQ=255)
                                                                                                                                           ggTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGCCCACCCTGCAcc          <  1:1187998/150‑1 (MQ=255)
                                                                                                                                            ggatcgcgCCCGTTCATGGACGAGCGCGGTACCTGTGGGAGCGGCCTTGTGTTGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGttggtcttgg                              >  2:1385946/5‑129 (MQ=18)
                                                                                                                                            ggatcgcgCCCGTTCATGGACGAGCGCGGTACCTGTGGGAGCGGCCTTGTGTTGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGttggtcttgg                              <  1:1385946/125‑1 (MQ=18)
                                                                                                                                            gTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGCCCAcc                 <  1:1156521/142‑1 (MQ=255)
                                                                                                                                            gTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGCCCAcc                 >  2:1156521/1‑142 (MQ=255)
                                                                                                                                            gTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGCGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTCCCCACCCTGCAccc         >  2:1347823/1‑150 (MQ=255)
                                                                                                                                             tACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTcc                           <  1:955640/131‑1 (MQ=255)
                                                                                                                                               ccGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGCCCACCCTGCACCCGGt      >  1:1973400/1‑150 (MQ=255)
                                                                                                                                                cgcgCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGCCCACCCTGCACCCGGtt     >  1:1634094/1‑150 (MQ=255)
                                                                                                                                                cgcgCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGCCCACCCTGCACCCGGtt     >  1:2191881/1‑150 (MQ=255)
                                                                                                                                                 gcgcTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGCCCACCCTGCACCCGGTTc    <  2:1564431/150‑1 (MQ=255)
                                                                                                                                                 gcgcTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGCGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTATGCTTGGTCCTTTGCCCACCCTGCAGCAGGTTc    >  1:2336996/1‑150 (MQ=39)
                                                                                                                                                   gcTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGCCCACCCTGCACCCggaaccg  <  1:1389100/150‑6 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
GGGCCGCAACGAGCCGTGCTGGTGTGGTTCGGGCAAGAAGTTCAAGCATTGCCACGGTCAGATCGAGTGATCTGAACCTTACGTTGTACAAGCCTGGGGTCGCTTTGCGGCCCTTTCGCAACACAAGGCCGCTCCCACAGGTACCGCGCTCGTCCATGAACGGGCGCGATCCTTGTGGGGGCGGCCTTGTGTCGCGATGGGGTGCGAAGCGGCCCCTTTTTCGACATCATCGTTTTTTCTAGGAGCGCTCTAATGGCTGTTGGTCTTGGTCCTTTGCCCACCCTGCACCCGGTTCCG  >  NC_002947/1534782‑1535078

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: