Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,557,407 C→G 5.9% A270P (GCC→CCC)  PP_1368 ← glycosyltransferase domain‑containing protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,557,4070CG 5.9% 459.8 / 12.1 144A270P (GCC→CCC) PP_1368glycosyltransferase domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base C (68/67);  new base G (5/4);  total (73/71)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 151 total aligned reads displayed.

GTCCCAGCAGGCACACAAACACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAGGTACAAGACGCTGTAGCGCAGTCCCCAGTGGATGCAGGTCAGGG  >  NC_002947/1557260‑1557553
                                                                                                                                                   |                                                                                                                                                  
gTCCCAGCAGGCACACAAACACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGgcgc                                                                                                                                                  >  1:554606/1‑150 (MQ=255)
 tCCCAGCAGGCACACAAACACCGGCCCCCCAGCCAGCGGATAAAAGGAATACGGAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCACGGGTGTCAACAGGCTGGCCGACGTCCGTTCGGCGGCCCCGGcgcc                                                                                                                                                 >  1:1161566/1‑150 (MQ=255)
 tCCCAGCAGGCACACAAACACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCACGGGTGTCAAAAGGCTGGCCGACGTCAGTGCGGCGGCCCCGGcgcc                                                                                                                                                 >  2:1933127/1‑150 (MQ=255)
  cccAGCAGGCACACAAACACCGGCCGCGCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGcgccg                                                                                                                                                <  2:1161566/150‑1 (MQ=255)
        agGCACACAAACACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCGCCGGGgccgccgaac                                                                                                                                          <  1:841517/150‑5 (MQ=255)
        agGCACACAAACACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGgc                                                                                                                                          >  2:799690/1‑150 (MQ=255)
        agGCACACAAACACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGgc                                                                                                                                          >  1:1887494/1‑150 (MQ=255)
          gaacacaAACACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGAGTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGgcag                                                                                                                                        >  2:1731012/3‑150 (MQ=255)
           cacacaAACACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGgcagc                                                                                                                                       <  1:1364930/150‑1 (MQ=255)
            acacaAACACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAGCTGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCGGCCAGgcagca                                                                                                                                      >  1:146892/1‑150 (MQ=255)
            acacaAACACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGgcagca                                                                                                                                      >  1:2063857/1‑150 (MQ=255)
            acacaAACACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGgcagca                                                                                                                                      >  2:546688/1‑150 (MQ=255)
            acacaAACACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGgcagca                                                                                                                                      >  1:1815998/1‑150 (MQ=255)
            acacaAACACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCCGGCTGTCCAGCGAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGgcagca                                                                                                                                      >  1:1250784/1‑150 (MQ=255)
              acaAACACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCGCCGGGgccgccgaa                                                                                                                                           <  1:2313529/143‑4 (MQ=255)
              acaAACACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGa                                                                                                                                    >  1:232603/1‑150 (MQ=255)
                aaaCACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCa                                                                                                                                             <  2:16294/139‑1 (MQ=255)
                aaaCACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCa                                                                                                                                             >  1:16294/1‑139 (MQ=255)
                aaaCACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACt                                                                                                                                  >  2:1359701/1‑150 (MQ=255)
                aaaCACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACt                                                                                                                                  <  2:504113/150‑1 (MQ=255)
                  acacCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCGCCGGGgccgccgaa                                                                                                                                           >  1:1216872/1‑136 (MQ=255)
                  acacCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCGCCGGGgccgccgaa                                                                                                                                           <  2:1216872/139‑4 (MQ=255)
                  acacCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGa                                                                                                                                >  2:2377451/1‑150 (MQ=255)
                   cacCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGaa                                                                                                                               <  1:1359701/150‑1 (MQ=255)
                    acCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAAt                                                                                                                              >  2:1699984/1‑150 (MQ=255)
                      cGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTg                                                                                                                            <  2:687131/150‑1 (MQ=255)
                        gCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGc                                                                                                                          <  2:232603/150‑1 (MQ=255)
                           ccccAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCgg                                                                                                                       >  2:1482624/1‑150 (MQ=255)
                           ccccAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCgg                                                                                                                       >  2:175051/1‑150 (MQ=255)
                            cccAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAAAAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGaa                                                                                                                               <  1:1306982/141‑1 (MQ=255)
                            cccAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAAAAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGaa                                                                                                                               >  2:1306982/1‑141 (MQ=255)
                                   agcagATAAAAGTAATACGTACCCGCCCGCCATATTAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGc                                                                                                               <  1:11847/150‑1 (MQ=255)
                                       gATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCCGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACa                                                                                                           <  2:2085661/150‑1 (MQ=255)
                                         tAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAGGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGgcagc                                                                                                                                       >  1:1262168/1‑120 (MQ=255)
                                                 acaCGTAACCGCCCGCCATATCACGATTGCCGCAGCTGCGGTCGAGCTGGCCACCAAGGGTGTCAACAGGCTGGCCGGCGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCAc                                                                                                 <  2:357731/148‑1 (MQ=255)
                                                 aTACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGTGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCAc                                                                                                 <  2:1373999/150‑1 (MQ=255)
                                                 aTACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCAc                                                                                                 <  2:1856103/150‑1 (MQ=255)
                                                 aTACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCAc                                                                                                 <  2:2251299/150‑1 (MQ=255)
                                                 aTACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCAc                                                                                                 >  2:649259/1‑150 (MQ=255)
                                                     gTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGgcagca                                                                                                                                      >  1:2228629/1‑109 (MQ=255)
                                                     gTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGgcagca                                                                                                                                      <  2:2228629/109‑1 (MQ=255)
                                                     gTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCCAGGCCAGCTCGGCGGCGCGGCCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACAAgg                                                                                             >  2:1059498/1‑150 (MQ=255)
                                                        aCCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACATGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGa                                                                                                                                    <  1:418739/108‑1 (MQ=255)
                                                        aCCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACATGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGa                                                                                                                                    >  2:418739/1‑108 (MQ=255)
                                                           gcccgccATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTg                                                                                       <  1:175051/150‑1 (MQ=255)
                                                           gcccgccATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTg                                                                                       <  1:2377451/150‑1 (MQ=255)
                                                           gcccgccATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTg                                                                                       <  2:1815998/150‑1 (MQ=255)
                                                            cccgccATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTgg                                                                                      <  1:661323/150‑1 (MQ=255)
                                                               gccATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGaa                                                                                   >  1:409295/1‑150 (MQ=255)
                                                                ccATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAAt                                                                                  >  2:414245/1‑150 (MQ=255)
                                                                 cATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATc                                                                                 <  1:1205986/150‑1 (MQ=255)
                                                                   tatCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCa                                                                               <  1:1699984/150‑1 (MQ=255)
                                                                     tCAGGATTGCCGCAGGTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGATGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGt                                                                             <  2:334709/150‑1 (MQ=255)
                                                                     tCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTgg                                                                                      >  1:1317258/1‑141 (MQ=255)
                                                                     tCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTgg                                                                                      <  2:1317258/141‑1 (MQ=255)
                                                                       aGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGc                                                                           <  1:293416/150‑1 (MQ=255)
                                                                        ggATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCa                                                                          <  2:1887494/150‑1 (MQ=255)
                                                                         gATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAg                                                                         <  1:1729081/150‑1 (MQ=255)
                                                                          aTTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCa                                                                               >  2:407930/1‑143 (MQ=255)
                                                                           ttGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGt                                                                       <  1:819443/150‑1 (MQ=255)
                                                                               cGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTg                                                                                       >  2:717909/1‑130 (MQ=255)
                                                                               cGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTg                                                                                       <  1:717909/130‑1 (MQ=255)
                                                                                      gCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAg                                                            <  2:8819/150‑1 (MQ=255)
                                                                                        ggTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGcc                                                          >  1:348005/1‑150 (MQ=255)
                                                                                          tCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGcccc                                                        <  1:1904506/150‑1 (MQ=255)
                                                                                             aGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCgca                                                     <  2:658946/150‑1 (MQ=255)
                                                                                                     accaAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCt                                                                                                                   <  1:555168/80‑1 (MQ=255)
                                                                                                     accaAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGc                                                                           <  1:1499940/120‑1 (MQ=255)
                                                                                                     accaAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGc                                                                           >  2:1499940/1‑120 (MQ=255)
                                                                                                     accaAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAgg                                             <  2:1346365/150‑1 (MQ=255)
                                                                                                     accaAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAgg                                             >  1:196061/1‑150 (MQ=255)
                                                                                                     accaAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAgg                                             >  2:2262003/1‑150 (MQ=255)
                                                                                                      ccaAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTgg                                                                                      <  2:1959417/108‑1 (MQ=255)
                                                                                                      ccaAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTgg                                                                                      >  1:1959417/1‑108 (MQ=255)
                                                                                                       caAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTg                                                                                       <  2:314622/106‑1 (MQ=255)
                                                                                                       caAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTg                                                                                       >  1:314622/1‑106 (MQ=255)
                                                                                                       caAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAGGTa                                           >  2:2034459/1‑150 (MQ=255)
                                                                                                          gggTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAGGTACaa                                        <  1:2034459/150‑1 (MQ=255)
                                                                                                               tCAACAGGCTGGCCGAGGTCAGTTCGGCGGCCCCGGCGCCGACAGGCAGCAGACTGAATTGGCCGGCGCGGAGCGACAGCATCTGCACCAGGAAGCTGGCAATCCCGTGCAGGTCTACCCCCAAGCCCAGCAGCACCAGGTACAACACgg                                   >  2:1092984/1‑149 (MQ=255)
                                                                                                                 aaCAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGa                                                                                                                 >  2:1656025/1‑70 (MQ=255)
                                                                                                                 aaCAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGa                                                                                                                 <  1:1656025/70‑1 (MQ=255)
                                                                                                                 aaCAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAGGTACAAGACGCTg                                 >  1:768568/1‑150 (MQ=255)
                                                                                                                      gCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAGGTACAAGACGCTGTAgcg                            >  1:2234192/1‑150 (MQ=255)
                                                                                                                        tGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAGGTACAAGACGCTGTAGCGCa                          <  2:179027/150‑1 (MQ=255)
                                                                                                                        tGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCACGTCTACCCCCAAGACCCGCAGCACCAGGTACAAGACGCTGTAGCGCa                          >  2:679087/1‑150 (MQ=255)
                                                                                                                         ggCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTgg                                                                                      >  2:1406076/1‑89 (MQ=255)
                                                                                                                         ggCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTgg                                                                                      <  1:1406076/89‑1 (MQ=255)
                                                                                                                         ggCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAGGTACAAGACGCTGTAGCGCAg                         >  1:2365716/1‑150 (MQ=255)
                                                                                                                              aCGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTg                                                                                       <  2:678629/83‑1 (MQ=255)
                                                                                                                              aCGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTg                                                                                       >  1:678629/1‑83 (MQ=255)
                                                                                                                                  cAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAGGTACAAGACGCTGTAGCGCAGTCCCCAGTg                <  2:2063857/150‑1 (MQ=255)
                                                                                                                                     ttCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAGGTACAAGACGCTGTAGCGCAGTCCCCAGTGGAt             >  1:107454/1‑150 (MQ=255)
                                                                                                                                      ctggcggcGCCGGGGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAGGTACAAGACGCTGTAGCGCAGTCCCCAGTGGATg            >  2:1595813/3‑150 (MQ=255)
                                                                                                                                        ggcggcCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAGGTACAAGACGCTGTAGCGCAGTCCCCAGTGGATGCa          >  1:1038481/1‑150 (MQ=255)
                                                                                                                                         gcggcCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAGGTACAAGACGCTGTAGCGCAGTCCCCAGTGGATGCAg         >  1:404199/1‑150 (MQ=255)
                                                                                                                                           ggcCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAGGTACAAGACGCTGTAGCGCAGTCCCCAGTGGATGCAGGt       <  1:1841737/150‑1 (MQ=255)
                                                                                                                                            gcCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAGGTACAAGACGCTGTAGCGCAGTCCCCAGTGGATGCAGGTc      <  2:2365716/150‑1 (MQ=255)
                                                                                                                                               ccGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAGGTACAAGACGCTGTAGCGCa                          >  2:236030/1‑127 (MQ=255)
                                                                                                                                               ccGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAGGTACAAGACGCTGTAGCGCAGTCCCCAGTGGATGCAGGTCAgg   <  2:768568/150‑1 (MQ=255)
                                                                                                                                               ccGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAGGTACAAGACGCTGTAGCGCAGTCCCCAGTGGATGCAGGTCAgg   <  2:119217/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
GTCCCAGCAGGCACACAAACACCGGCCCCCCAGCCAGCAGATAAAAGTAATACGTAACCGCCCGCCATATCAGGATTGCCGCAGCTGCGGTCGAGCTGCCCACCAAGGGTGTCAACAGGCTGGCCGACGTCAGTTCGGCGGCCCCGGCGCCGCCAGGCAGCAGACTGAATTGGCCGGCGCTGAGCGACAGCATCTGCACCAGGAAGCTGGGAATCCAGTGCAGGTCTACCCCCAAGCCCCGCAGCACCAGGTACAAGACGCTGTAGCGCAGTCCCCAGTGGATGCAGGTCAGGG  >  NC_002947/1557260‑1557553

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑