| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,580,646 | C→T | 10.1% | V265I (GTC→ATC) | ttgB ← | efflux pump membrane protein TtgB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,580,646 | 0 | C | T | 10.1% | 340.7 / 21.6 | 127 | V265I (GTC→ATC) | ttgB | efflux pump membrane protein TtgB |
| Reads supporting (aligned to +/- strand): ref base C (54/60); new base T (7/6); total (61/66) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.73e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
Only 100 of 130 total aligned reads displayed.
TTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGCAGGCCGCCGAGCTGGCCGGAA > NC_002947/1580497‑1580794 | ttCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGAc > 1:1670407/1‑150 (MQ=255) aGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCg > 2:1957704/1‑150 (MQ=255) tttGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGTGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAg > 1:1495373/1‑150 (MQ=255) tttGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAg > 2:772312/1‑150 (MQ=255) tGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGgc > 1:1936628/1‑150 (MQ=255) gATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGATGTCGCCCaagta < 1:2031296/150‑5 (MQ=255) aTGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGATGTCGCCCaagtag < 2:610212/150‑6 (MQ=255) ggTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGTGTGCCGTTGAACTGTGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCAc < 1:145729/150‑1 (MQ=255) tctcGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGATTTCACACACCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCt > 2:1832357/1‑150 (MQ=255) cgcgcgCAGTGCCTTGGCGGTGTCCCGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCTCAGGCGCACCtg > 2:652266/3‑150 (MQ=255) tcGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCa > 2:935876/1‑145 (MQ=255) tcGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCa < 1:935876/145‑1 (MQ=255) tcGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCtgt > 2:1116269/1‑150 (MQ=255) tcGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCtgt > 1:2390370/1‑150 (MQ=255) tcGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCtgt > 2:2107389/1‑150 (MQ=255) gcgcAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATc > 2:226372/1‑132 (MQ=255) gcgcAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATc < 1:226372/132‑1 (MQ=255) gcgcAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGa > 2:1880171/1‑150 (MQ=255) cTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGGAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCttt < 1:2290486/150‑1 (MQ=255) cTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGATGTCGCCCaagta < 2:1430088/132‑5 (MQ=255) cTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCttt < 1:967728/150‑1 (MQ=255) cTTGGCGGTGTCAAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCttt > 2:1731998/1‑150 (MQ=255) ttGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGTATGCCTGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTttg < 2:2245079/150‑1 (MQ=255) tGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTttgt < 1:1912129/150‑1 (MQ=255) tgtCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCt < 1:1276681/150‑1 (MQ=255) cAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGATGTCGCCCaa < 1:1752472/117‑2 (MQ=255) cAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGATGTCGCCCaa > 2:1752472/1‑116 (MQ=255) gcgcGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCa < 1:492444/150‑1 (MQ=255) gcgcGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCa > 2:145176/1‑150 (MQ=255) tGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATAc < 2:1936628/150‑1 (MQ=255) gcgcCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATActc > 2:217127/1‑150 (MQ=255) gcgcCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATActc < 2:1671241/150‑1 (MQ=255) gcCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACtctc < 1:1957704/150‑1 (MQ=255) ccGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCt < 1:1517015/123‑1 (MQ=255) ccGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCt > 2:1517015/1‑123 (MQ=255) ccGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCg < 1:1369160/150‑1 (MQ=255) gTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAAc < 2:2390370/150‑1 (MQ=255) gTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTcgg > 2:676828/1‑150 (MQ=255) ttttACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTcggc < 2:1608964/150‑1 (MQ=255) tttACAGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTcggcg > 2:2203923/1‑150 (MQ=255) ccGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGttt < 1:217127/150‑1 (MQ=255) gCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGTGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGc < 1:1731998/150‑1 (MQ=255) ccAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCa > 2:1577881/1‑150 (MQ=255) aGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAgg > 2:1429395/1‑150 (MQ=255) gCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCg > 1:276000/1‑150 (MQ=255) ccGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGc < 1:1257469/150‑1 (MQ=255) ggCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCg > 1:845536/1‑150 (MQ=255) cTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCgat < 1:1880171/150‑1 (MQ=255) cGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCg > 2:324597/1‑133 (MQ=255) gTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGc < 2:501542/131‑1 (MQ=255) gTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGCGTGTTGCCGATTAtggt > 2:1060853/1‑150 (MQ=255) cTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGtt > 2:646746/1‑150 (MQ=255) ggCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAg < 1:2136534/150‑1 (MQ=255) ggCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAg < 1:1719531/150‑1 (MQ=255) ggCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGGTCAg > 2:82599/1‑150 (MQ=255) gcgcTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGc < 1:1577881/150‑1 (MQ=255) gcTGACGGCGTAGTTTTCACCCCCCAGCCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTg < 1:598298/150‑1 (MQ=255) cTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGTTACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTgg < 2:276000/150‑1 (MQ=255) cTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTgg < 1:1832357/150‑1 (MQ=255) aCGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCtgtg < 2:2050431/58‑1 (MQ=255) aCGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCtgtg > 1:2050431/1‑58 (MQ=255) gTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACtctc > 2:706583/1‑87 (MQ=255) gTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACtctc < 1:706583/87‑1 (MQ=255) gTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCg > 2:808551/1‑111 (MQ=255) gTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCg < 1:808551/111‑1 (MQ=255) gTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCgg > 1:2126139/1‑150 (MQ=255) tAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGc > 2:1325333/1‑150 (MQ=255) gTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAg < 1:2148107/150‑1 (MQ=255) gTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAg < 1:82599/150‑1 (MQ=255) tttCACCCCCCAGGCTTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAggg < 2:1680011/150‑1 (MQ=255) tttCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAggg < 1:1060853/150‑1 (MQ=255) ttCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGc < 2:786479/150‑1 (MQ=255) tCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGTCCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCt < 1:1074669/150‑1 (MQ=255) ccccccAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGc > 2:303149/1‑150 (MQ=255) ccccAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGCAg < 1:1363860/150‑1 (MQ=255) ccccAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGCAg > 1:752233/1‑150 (MQ=255) cccAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGCAgg < 1:628292/150‑1 (MQ=255) ccAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGCAGgc > 1:923906/1‑150 (MQ=255) ccAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCATGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGCAGgc > 2:1561597/1‑150 (MQ=255) ggCCTACTTGGGCGACATCGGCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGGACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCATCTGGGTGCTCGGCAGGGCTGTCAGgccgc < 2:604341/150‑1 (MQ=255) gCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGCAGgccgcc > 1:468673/1‑150 (MQ=255) ccTACTTGGGCGACATCGCAAAGGCGCATCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGCAGGccgccg < 2:2360004/150‑1 (MQ=255) cTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCCCATTGGCTGGCAGGCCGCCGa > 1:737034/1‑150 (MQ=255) gcctGGGCGATGTCGCCCAGGCGCACCTGTGCACCGTCTTGGTTGACCTTGAGCAGGATACTCTCTAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGGCGGCAGGCCGCCGAGc > 2:2202883/4‑150 (MQ=255) cctGGGCGATGTCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGaa > 1:1051532/3‑67 (MQ=255) cTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGCAGGCCGCCGAGCt < 2:752233/150‑1 (MQ=255) ttGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACtctc < 2:336089/63‑1 (MQ=255) ttGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACtctc > 1:336089/1‑63 (MQ=255) ttGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGCAGgccg < 2:2001339/142‑1 (MQ=255) tGGGCGATGTCGCCCAGGCGCACCTGTGAACCGTCTTGGTTGACATTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGGCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGCAGGCCGCCGAGCTgg > 2:79051/1‑150 (MQ=255) ggCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGGCCCGACATCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGCAGGCCGCCGAGCTGGcc > 1:1251054/1‑150 (MQ=255) gCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGCAGGCCGCCGAGCTGGCCg > 2:2296590/1‑150 (MQ=255) cGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGCAGGCCGCCGAGCTGGCCgg > 1:1625971/1‑150 (MQ=255) aCATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGaa > 1:1301500/1‑59 (MQ=255) aCATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGaa < 2:1301500/59‑1 (MQ=255) aCATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGCAGGCCGCCGAGCTGGCCGGaa < 1:1116269/150‑1 (MQ=255) aCATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGCAGGCCGCCGAGCTGGCCGGaa < 1:646746/150‑1 (MQ=255) aCATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGCAGGCCGCCGAGCTGGCCGGaa < 1:676828/150‑1 (MQ=255) aCATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGCAGGCCGCCGAGCTGGCCGGaa < 2:1670407/150‑1 (MQ=255) cATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTgg < 2:2134787/110‑1 (MQ=255) | TTCCAGGCCTTTGATGGTCTCGCGCAGTGCCTTGGCGGTGTCCAGCGCGTTGGCGCCGGTTGCCAGTTTTACCGCCAGGCCGGAAGCCGGCTTGCCGTTGAACTGGGCGCTGACGGCGTAGTTTTCACCCCCCAGGCCTACTTGGGCGACATCGCCCAGGCGCACCTGTGAACCGTCTTTGTTGACCTTGAGCAGGATACTCTCGAACTGCTCGGCGGTTTGCAGGCGGGTCTTGCCGATGATGGTGGCGTTCAGCTGGGTGCCCGGCAGGGCTGGCAGGCCGCCGAGCTGGCCGGAA > NC_002947/1580497‑1580794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |