| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,621,919 | T→C | 7.1% | L264P (CTG→CCG) ‡ | PP_1421 → | sensor histidine kinase TctE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,621,919 | 0 | T | C | 7.1% | 290.2 / 8.0 | 100 | L264P (CTG→CCG) ‡ | PP_1421 | sensor histidine kinase TctE |
| Reads supporting (aligned to +/- strand): ref base T (41/50); new base C (5/2); total (47/53) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.48e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01 | |||||||||||
Only 100 of 101 total aligned reads displayed.
CGACTTGCGAGCGTTGCCGGTGGTGCAGGTGCAGCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGACCCACCTGGCCAACCAGCTGTTGTCCCTGGCGCGGGTCGAG > NC_002947/1621770‑1622061 | cgacTTGCGAGCGTTGCCGGTGGTGCAGGTGCAGCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCt < 1:2025222/150‑1 (MQ=255) gacTTGCGAGCGTTGCCGGTGGTGCAGGTGCAGCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTg < 1:1039385/150‑1 (MQ=255) gacTTGCGAGCGTTGCCGGTGGTGCAGGTGCAGCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTg < 2:1248230/150‑1 (MQ=255) acTTGCGAGCGTTGCCGGTGGTGCAGGTGCAGCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTgg < 2:584555/150‑1 (MQ=255) ttGCGAGCGTTGCCGGTAATGCAGCAGGAGCGCGAGCTGGGCCCGCTGGTGCGGGCCTGGAACCACTTTACCGAGCGCTTGCGCGGCAAGTTCGCGCGCCAGTCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTggcg > 2:1728205/1‑150 (MQ=255) tGCGAGCGTTGCCGGTGGTGCAGGTGCAGCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTggcgg < 2:905377/150‑1 (MQ=255) aGCGTTGCCGGTGGTGCAGGTGCAGCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCCAGCGGCGtt < 1:631684/150‑1 (MQ=255) gTTGCCGGTGGTGCAGGTGCAGCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGaa < 1:1840163/150‑1 (MQ=255) gTTGCCGGTGGTGCAGGTGCAGCGCGAGCTGGGCCCGCTGGTGCCCGACTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGaa < 1:1467952/150‑1 (MQ=255) ttGCCGGTGGTGCAGGTGCAGCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCCAGCGGCGttcgca < 2:2361781/150‑5 (MQ=255) ccGGTGGTGCAGGTGCAGCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCa > 2:1493255/1‑150 (MQ=255) cGGTGGTGCAGGTGCAGCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCAc < 1:1493255/150‑1 (MQ=255) cGGTGGTGCAGGTGCAGCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCAc > 2:1154527/1‑150 (MQ=255) cGGTGGTGCAGGTGCAGCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCAc < 1:776014/150‑1 (MQ=255) cGGTGGTGCAGGTGCAGCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCAc > 1:1204038/1‑150 (MQ=255) gtgcaggtgcagCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTc < 1:972271/150‑1 (MQ=255) ggtgcagCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGATCGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCt < 1:1069316/150‑1 (MQ=255) ggtgcagCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGATGGCACGTGTCGAGCt < 1:1174486/150‑1 (MQ=255) ggtgcagCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCAACGCACGCCGCTAGTTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCt < 1:1855732/150‑1 (MQ=255) tgcagCGCGAGCTTGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTgg < 2:1624905/150‑1 (MQ=255) tgcagCGCGAGCTGGGCCCGCTGGTTCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTgg < 2:1340553/150‑1 (MQ=255) tgcagCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTgg < 1:1625209/150‑1 (MQ=255) tgcagCGCGAGCTGGGACCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTgg < 2:952596/150‑1 (MQ=255) gcgcGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTGTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCtt > 1:193075/1‑150 (MQ=255) cgcgAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTg > 2:1516308/1‑150 (MQ=255) cgcgAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTg < 1:79158/150‑1 (MQ=255) aGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCt < 2:1286336/150‑1 (MQ=255) gCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTc > 1:2272603/1‑150 (MQ=255) tGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCgg < 2:1260688/150‑1 (MQ=255) ggCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGcc > 2:2157691/1‑150 (MQ=255) cccGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCAc < 1:1764213/122‑1 (MQ=255) cccGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCAc > 2:1764213/1‑122 (MQ=255) cccGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGa < 2:90314/150‑1 (MQ=255) gCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGa < 1:1572940/147‑1 (MQ=255) gCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGa > 2:1572940/1‑147 (MQ=255) gTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCGCGCAGGGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAg > 1:151571/1‑150 (MQ=255) gTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAg < 2:2220296/150‑1 (MQ=255) cagcgggcCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAg < 1:207800/144‑1 (MQ=255) gcgcgcCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGa < 2:1204038/150‑1 (MQ=255) gcgcgcCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGa < 2:852737/150‑1 (MQ=255) cgcgcCTAGAACCACTCCACCCAGGGCTTGCGCCGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAg < 2:1124528/150‑1 (MQ=255) gcgcCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGt > 2:2117325/1‑150 (MQ=255) gcgcCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGt > 2:2344172/1‑150 (MQ=255) gagcCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTTCGCTCGGCCGAGCCGCAGGAGt > 1:2020722/3‑150 (MQ=255) gcCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTgg > 2:1174259/1‑150 (MQ=255) ccTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCtt < 1:499414/124‑1 (MQ=255) ccTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCtt > 2:499414/1‑124 (MQ=255) ccTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTggc > 2:60930/1‑150 (MQ=255) cTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCGCGAACTGCGAACGCCGCGGGCGGCGTTGAAGGAAGGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTggcg > 1:748613/1‑150 (MQ=255) cTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCtt > 2:2032483/1‑150 (MQ=255) tttACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTg < 2:468989/150‑1 (MQ=255) tACCGAGCGCTTGCGCGGCCAGTTCGCGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGa < 2:521906/150‑1 (MQ=255) cGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGCGCAGGTCGTCCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTc > 2:63544/1‑150 (MQ=255) gatcgcTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCg > 2:2192119/4‑150 (MQ=255) gAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGaa < 1:1311404/86‑1 (MQ=255) gAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCg < 1:2344172/150‑1 (MQ=255) gAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACCGCGAACGCCGCTGGCGGCGTTGaa > 2:1311404/1‑86 (MQ=255) aGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCgg < 1:1436869/150‑1 (MQ=255) cTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGc < 1:212174/150‑1 (MQ=255) ttGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCa < 1:2255201/131‑1 (MQ=255) ttGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCa > 2:2255201/1‑131 (MQ=255) ttGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGcc > 2:1180865/1‑150 (MQ=255) cgcgGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAg < 1:2159963/150‑1 (MQ=255) gcgGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGGCGGCAGCCCAgg > 1:1948567/1‑150 (MQ=255) cAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCAcc > 1:816640/1‑150 (MQ=255) aGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCg > 1:1815559/1‑150 (MQ=255) gAGCGCCAGGGGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCGGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAgg < 2:496728/150‑1 (MQ=255) gAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAgg < 2:2210093/150‑1 (MQ=255) gcCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGa > 1:321690/1‑150 (MQ=255) gcCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGa > 1:321709/1‑150 (MQ=255) cAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCa < 2:162007/131‑1 (MQ=255) cAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCa > 1:162007/1‑131 (MQ=255) cAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGAcc > 1:134575/1‑150 (MQ=255) cAGGCGCAGTTCATTGCCGACGCGGCCAAAGAACTGCGAACGCCTCTGGCGGCGTTGAAGGCACGTGTCGAGGTTGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGGcc > 2:277940/1‑150 (MQ=255) aGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGCGGCGGCAGACCTGGGAGTCTGCAGCCCAGGGCACCGCACGGCTGaaaa > 2:1000508/1‑147 (MQ=255) ggCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAg < 1:891990/58‑1 (MQ=255) ggCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAg > 2:891990/1‑58 (MQ=255) aGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGACCCACCTgg > 1:1355969/1‑150 (MQ=255) gTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGACCCACCTGGc < 1:1516308/150‑1 (MQ=255) gTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGACCCACCTGGc > 1:1580068/1‑150 (MQ=255) ttCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGACCCACCTGGcc > 2:409658/1‑150 (MQ=255) ttGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGACCCACCTGGACAAca > 1:1173634/1‑149 (MQ=255) ccGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGaa < 1:2288094/43‑1 (MQ=255) ccGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGaa > 2:2288094/1‑43 (MQ=255) cgGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGACCCACCTGGCCAACCAGCtgttgt < 1:409658/150‑1 (MQ=255) cccACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGACCCACCTGGCCAACCAGCTGTTGTccc < 1:2117325/150‑1 (MQ=255) ccACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGc < 1:1123794/99‑1 (MQ=255) ccACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGc > 2:1123794/1‑99 (MQ=255) cACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGACCCACCTGGCCAACCAGCTGTTGTCCCTg < 1:2192119/150‑1 (MQ=255) cACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGACCCACCTGGCCAACCAGCTGTTGTCCCTg < 1:1928252/150‑1 (MQ=255) aCGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCTGCAGCCCAGGGCACCGACAGGCTGACCCACCTGGCCAACCAGCTCTTGTCCCTgg > 2:1374982/1‑150 (MQ=255) ccttcaaCGCCGCCAGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGTCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGACCCACCCGGCCAACCAGCTGTTGTCCCTGGCGCgg > 2:352/6‑150 (MQ=255) cTGCGAACGCCGCTGGCGGCTTTGAAGGCACGTGTCGAGCTGGGCTTGCTCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGACCCACCTGGCCAACCAGCTGTTGTCCCTGGCGCgg < 1:1166472/150‑1 (MQ=255) cttcaaCGCCGCCAGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGACCCACCTGGCCAACCAGCTGTTGTCCCTGGCGCggg > 2:1663175/5‑150 (MQ=255) ttcaaCGCCGCCAGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCAGCGACAGGCTGACCCACCTGGCCAACCAGCTGTTGTCCCTGGCGCgggg > 2:1618000/4‑149 (MQ=255) gCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGACCCACCTGGCCAACCAGCTGTTGTCCCTGGCGCGGGt < 2:2287634/150‑1 (MQ=255) aaCGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTc < 2:1586677/84‑1 (MQ=255) aaCGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTc > 1:1586677/1‑84 (MQ=255) aaCGCCGCCAGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGACCCACCTGGCCAACCAGCTGTTGTCCCTGGCGCGGGTCga > 2:1092308/1‑150 (MQ=255) aCGCCGCCAGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCGGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGACCCACCTGGCCAACCAGCTGTTGTCCCTGGCGCGGGTCgag > 2:1448527/1‑150 (MQ=255) | CGACTTGCGAGCGTTGCCGGTGGTGCAGGTGCAGCGCGAGCTGGGCCCGCTGGTGCGCGCCTTGAACCACTTTACCGAGCGCTTGCGCGGCCAGTTCGAGCGCCAGGCGCAGTTCATTGCCGACGCGGCCCACGAACTGCGAACGCCGCTGGCGGCGTTGAAGGCACGTGTCGAGCTGGGCTTGCGCTCGGCCGAGCCGCAGGAGTGGCGGCAGACCTTGGAGTCGGCAGCCCAGGGCACCGACAGGCTGACCCACCTGGCCAACCAGCTGTTGTCCCTGGCGCGGGTCGAG > NC_002947/1621770‑1622061 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |