| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 195,559 | C→A | 21.0% | T355T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 195,559 | 0 | C | A | 21.0% | 218.0 / 42.8 | 95 | T355T (ACC→ACA) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base C (35/40); new base A (9/11); total (44/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.04e-01 | |||||||||||
CCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAG > NC_002947/195412‑195702 | ccAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGACACCATCGA‑GAACGCCACcgg > 2:1228067/1‑150 (MQ=17) aGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACcggcg < 1:1167128/150‑1 (MQ=32) aGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACcggcg < 2:1783485/150‑1 (MQ=32) aGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACcggcg < 2:37663/150‑1 (MQ=32) gtgaccgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTc > 1:600361/1‑150 (MQ=38) gaccgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGa < 2:171506/150‑1 (MQ=37) gaccgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGa < 2:1889449/150‑1 (MQ=37) gaccgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGa < 2:2183791/150‑1 (MQ=35) gaccgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGa < 1:1681915/150‑1 (MQ=37) cccgtgatcCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAg < 1:35990/149‑1 (MQ=37) cgtgaccCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCa > 2:1345519/1‑150 (MQ=37) ccTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAACACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCCGTAATTTCGGGCAACTGAc > 2:962346/1‑150 (MQ=255) ccTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGAc > 2:2336700/1‑150 (MQ=255) ccTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGAc > 1:1243804/1‑150 (MQ=39) ccTGTCCAACGGCCACGGCAGCACTGTTGAAGCCGGCAAAACCCAGGCCAGCGACAAGTTCCCGACCCCGGCCAAAGACGTCCACAACAACGGTTCCACCGGCAGCGTCACCATCGA‑GAACGCCACCAGCGGAAATCTCGAGCACCCGAc > 2:842045/1‑150 (MQ=11) cTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGAcc > 1:822496/1‑150 (MQ=255) gTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGAcccc < 1:1571524/150‑1 (MQ=255) gTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGAcccc < 2:854655/150‑1 (MQ=40) tCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACC‑CCGACGAACGCCACCGGCGGTAATTTCGAGCAACTGagatcg > 1:1231655/1‑145 (MQ=14) cAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTGCAGACCCGGGCCAATGACGGCGACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GACCGCAACCGGCGATAATTTCGAGCAACTGACCCCGaa > 2:2281513/1‑150 (MQ=14) atctgCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGaan < 2:1227062/146‑2 (MQ=255) ccGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATc < 2:626381/149‑1 (MQ=255) aCGGCTAGGTCATCACTGTTGAAGCCCGCAAAACCCAGGGCAGCGTTGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATc < 2:970033/150‑1 (MQ=255) aCGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATc < 1:588839/150‑1 (MQ=255) ccAGGTCATCACTGTTGAAGCCGGCAANACCCAGGGCAGCNTCGATTNCNAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATcagat > 1:1227062/1‑146 (MQ=255) cAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTTTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGAcc < 2:612903/150‑1 (MQ=255) atcaCTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCt > 1:982923/1‑150 (MQ=255) tcaCTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTc > 1:56083/1‑150 (MQ=255) aCTGTTGACGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCTGAATCCGACCCCGGCTCAg > 1:867724/1‑150 (MQ=255) aCTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATc < 2:680067/136‑1 (MQ=255) aCTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATc > 1:680067/1‑136 (MQ=255) cTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGa < 2:2037256/150‑1 (MQ=40) ttGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTc < 1:1922219/113‑1 (MQ=37) ttGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTc > 2:1922219/1‑113 (MQ=37) ctgCAAAACCCAGGGCAGCGTCGCTTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCaa < 2:888367/148‑1 (MQ=255) cAAAACCCAGGGCAGCGTCGATTTCTAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGa < 1:1564285/150‑1 (MQ=38) aCCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCg < 1:242008/126‑1 (MQ=37) aCCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCg > 2:242008/1‑126 (MQ=35) gggCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGa < 1:2336700/150‑1 (MQ=35) ggCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGac > 1:2127617/1‑150 (MQ=37) tCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGCCCCCGAATCCGACCCCGGCTCAGACCACGATCAACGCCTCGGTCGCcaccccca > 2:1046123/1‑150 (MQ=255) tCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGa > 2:1446045/1‑150 (MQ=255) cAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAcc < 1:1345519/150‑1 (MQ=255) cAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAcc < 2:982923/150‑1 (MQ=255) cAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAcc < 2:822496/150‑1 (MQ=255) aGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAAttt > 2:1486480/1‑76 (MQ=39) aGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAAttt < 1:1486480/76‑1 (MQ=39) aGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGAcac < 2:1243804/150‑3 (MQ=255) gACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCt > 2:1485837/1‑150 (MQ=255) cccGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCCGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGAc > 1:521314/1‑150 (MQ=255) cccGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCt > 2:796873/1‑147 (MQ=255) cccGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCt < 1:796873/147‑1 (MQ=255) cccGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGAc < 1:1046123/150‑1 (MQ=255) cccGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGAc > 2:2076385/1‑150 (MQ=255) cGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACgg > 2:1918987/1‑150 (MQ=255) ggCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGc < 2:2127617/150‑1 (MQ=255) aaTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGCATCCGCCCCCGGCTCAGACCACGCTCAACGACTCGGTCGACACCACTACCGCGGCCCTGACGGCGAGc < 2:279484/150‑1 (MQ=11) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGAc < 2:1358801/142‑1 (MQ=12) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGAc > 1:1358801/1‑142 (MQ=12) aTGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGcc < 2:1057851/150‑1 (MQ=12) tGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGccc > 2:1853653/1‑150 (MQ=38) gTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCg > 2:256817/1‑150 (MQ=14) cTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGc > 1:1236999/1‑138 (MQ=16) cTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGc < 2:1236999/138‑1 (MQ=18) tACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTc > 1:70649/1‑150 (MQ=39) aacaacGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGAc < 1:94294/89‑1 (MQ=35) aacaacGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGAc > 2:94294/1‑89 (MQ=35) aacGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa < 1:2076385/150‑1 (MQ=39) acGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa < 1:1015142/149‑1 (MQ=39) acGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGaa > 2:1015142/1‑149 (MQ=38) acGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAg < 1:2029060/150‑1 (MQ=17) cGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAgg < 1:1059614/150‑1 (MQ=38) cGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAgg < 1:256817/150‑1 (MQ=12) gTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg < 2:420326/150‑1 (MQ=18) gTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcg < 1:1451860/150‑1 (MQ=17) tCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAggcggc < 2:70649/150‑1 (MQ=39) gACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGc > 1:732179/1‑127 (MQ=40) gACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGc < 2:732179/127‑1 (MQ=40) aCCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTg > 2:2383345/1‑150 (MQ=39) cGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGAt < 1:1485837/150‑1 (MQ=255) cGTCAGCGTCACCATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCAACCCCGGCTCAGACCACGATCAACGACTCGGTCGAcacca > 1:715917/1‑101 (MQ=2) cGTCAGCGTCACCATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCAACCCCGGCTCAGACCACGATCAACGACTCGGTCGAcacca < 2:715917/101‑1 (MQ=2) tCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa < 2:600361/150‑1 (MQ=39) tCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCCGGGCGACGCTTTCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCa > 2:1270105/1‑150 (MQ=11) aGCGTCACCATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACt > 1:1803482/1‑150 (MQ=12) gTCACCATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTac > 2:2337719/1‑150 (MQ=12) cACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTaaac < 2:349979/150‑1 (MQ=255) cACCATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTacac > 1:646339/1‑150 (MQ=12) aCCATCGA‑GAACGCCCCCGGCGGTAATTTCGAGCAACTAATCCCGAATCCGACACCGGCTCAGACCACGATCAACGACTCGGTTGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGGCACCGAAGGCGGCGTGATCACTTACAcc > 2:1804694/1‑150 (MQ=11) cATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGa < 1:2100498/110‑1 (MQ=255) cATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGa > 2:2100498/1‑110 (MQ=255) cATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt > 2:1678123/1‑150 (MQ=14) cATCGA‑GAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGt < 1:688154/150‑1 (MQ=17) tCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACTCTGACGGCGAGCCCGTCGGTCACCGGAGGCGGCGTGATCACTTACACCGTGa < 2:56083/150‑1 (MQ=255) tCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGa > 1:1082258/1‑150 (MQ=255) a‑gaACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGAccc > 2:12559/1‑150 (MQ=255) ccGCCACCGGCGGTACTTTCGAGTGTATGATCCCGATTCCTACCCCGGCTCAGACCCCGGACCACGGTACACTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 1:1853653/149‑1 (MQ=14) aCGCAACCGGCGGTAATTGCCAGCAACTGACCCCGAATCCCCCCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCTCCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGa < 2:867724/150‑1 (MQ=14) cGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGNCCGTCGNTCACCGAAGGCGNCGTGATCACTTACACCGTGACCCTGAg < 1:2073953/150‑1 (MQ=255) cacaGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACTACCGCGACCCTGACGGCGAGcccctc > 1:992823/1‑102 (MQ=255) | CCAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAGGTCATCACTGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGATTTCCAGACCCCGGCCAATGACGTCTACAACAACGGTTCGACCGTCAGCGTCACCATCGA‑GAACGCCACCGGCGGTAATTTCGAGCAACTGACCCCGAATCCGACCCCGGCTCAGACCACGATCAACGACTCGGTCGACACCACCACCGCGACCCTGACGGCGAGCCCGTCGGTCACCGAAGGCGGCGTGATCACTTACACCGTGACCCTGAG > NC_002947/195412‑195702 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |