| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,739,824 | T→A | 8.5% | intergenic (‑16/+41) | PP_1534 ← / ← PP_1535 | hypothetical protein/putative Methyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,739,824 | 0 | T | A | 8.5% | 359.2 / 16.9 | 116 | intergenic (‑16/+41) | PP_1534/PP_1535 | hypothetical protein/putative Methyltransferase |
| Reads supporting (aligned to +/- strand): ref base T (52/54); new base A (5/5); total (57/59) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 118 total aligned reads displayed.
GCCATTTGATGCATTCCCCCATCTACCTGGCAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTTCTCATCGGTGAGAGCAAGCAGCTCGCT > NC_002947/1739675‑1739969 | gCCATTTGATGCATTCCCCCATCTACCTGGCAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCAt > 1:553958/1‑150 (MQ=255) cATTTGATGCATTCCCCCATCTACCTGGCAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACGCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGc > 2:1741941/1‑150 (MQ=255) aTTTGATGCATTCCCCCATCTACCTGGCAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGcc > 1:1053403/1‑150 (MQ=255) aTTTGATGCATTCCCCCATCTACCTGGCAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGcc > 1:574988/1‑150 (MQ=255) gATGCATTCCCCCATCTACCTGGCAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCcgc‑g > 1:564716/1‑150 (MQ=255) aTGCACTCCCCCATCTACCTGGCAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCcgccg > 2:36672/1‑148 (MQ=255) tGCATTCCCCCATCTACCTGGCAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑Ca > 1:1244643/1‑150 (MQ=255) gCATTCCCCCATCTACCTGGCAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CAt < 1:1000031/150‑1 (MQ=255) gCATTCCCCCATCTACCTGGCAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CAt > 1:1199748/1‑150 (MQ=255) gCATTCCCCCAACTACCTGGCAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CAt < 1:723127/150‑1 (MQ=255) ccccATCTACCTGGCAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTcggc > 2:1523540/1‑150 (MQ=255) ccccATCTACCTGGCAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTcggc > 2:1104807/1‑150 (MQ=255) cccATCTACCTGGCAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTcggcg > 2:1606952/1‑150 (MQ=255) agtcagcgagctgcttgctctcaccgatgagaaacccctgtttggccacaagtccggtaaacgcgaaaagacgcactggatcaccttcatgaagcgccccgcagcctaacccctccccctactactCAAGCCCGC‑G‑CATGTCGGCGGGCt > 2:1615847‑M1/127‑150 (MQ=255) cTACCTGGCAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCtt < 1:2226256/150‑1 (MQ=255) cTACCTGGCAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCtt < 1:1741941/150‑1 (MQ=255) tGGTAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGagta > 2:2288757/1‑150 (MQ=255) tGGCAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGagta > 2:2281188/1‑150 (MQ=255) tGGCAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATAGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCACTAGCTCTCACTGCCCGC‑G‑CATGTAGGCGGGCTTGagga > 1:1074514/1‑148 (MQ=255) aGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGtagtag < 1:2120238/150‑1 (MQ=255) gATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGa < 1:920309/142‑1 (MQ=255) gATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGa > 2:920309/1‑142 (MQ=255) aTGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGCCCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAggg > 2:331842/1‑150 (MQ=255) tGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAgggg < 2:1579510/150‑1 (MQ=255) tGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAgggg < 1:2281188/150‑1 (MQ=255) tGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAgggg < 2:574988/150‑1 (MQ=255) aGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAg < 1:1606952/150‑1 (MQ=255) tctcaccgatgagaaacccctgtttggccacaagtccggtaaacgcgaaaagacgcactggatcaccttcatgaagcgccccgcagcctaacccctccccctactactCAAGCCCGC‑G‑CATGTCGGCGGGCtt > 1:208502‑M1/109‑133 (MQ=255) tctcaccgatgagaaacccctgtttggccacaagtccggtaaacgcgaaaagacgcactggatcaccttcatgaagcgccccgcagcctaacccctccccctactactCAAGCCCGC‑G‑CATGTCGGCGGGCtt < 2:208502‑M1/25‑1 (MQ=255) cGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTa < 1:1695120/150‑1 (MQ=255) ccAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCgg < 2:553958/150‑1 (MQ=255) cAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTcggc < 1:2197568/114‑1 (MQ=255) cAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCggg > 2:1557418/1‑150 (MQ=255) cAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCggg < 2:1008968/150‑1 (MQ=255) cAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCggg < 1:1104807/150‑1 (MQ=255) cAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCggg > 2:457776/1‑150 (MQ=255) acgacgATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGgc > 1:1813141/1‑150 (MQ=255) gacgaTGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGTGGGCTTGAGTAGTAGGGGGAg < 1:1609627/131‑1 (MQ=255) tGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGa < 1:1511725/113‑1 (MQ=255) tGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGa > 2:1511725/1‑113 (MQ=255) tGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCAt > 1:1896703/1‑150 (MQ=255) tGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCAt < 1:1557418/150‑1 (MQ=255) gCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATg > 2:416489/1‑150 (MQ=255) gccacaagtccggtaaacgcgaaaagacgcactggatcaccttcatgaagcgccccgcagcctaacccctccccctactactCAAGCCCGC‑G‑CATGTCGGCGGGc < 2:2031455‑M1/23‑1 (MQ=255) gAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAg < 2:1199748/150‑1 (MQ=255) gAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGAGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAg < 2:1070405/150‑1 (MQ=255) aGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAgg < 2:1813141/150‑1 (MQ=255) gTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGt > 2:2197475/1‑150 (MQ=255) tttCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGGGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTg < 1:2288757/150‑1 (MQ=255) tttCCCGGGATCTGCTTCATGGCCTTTTTCGCCAATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTg > 2:1481428/1‑150 (MQ=255) ttCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGa < 1:457776/150‑1 (MQ=255) cccGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATc > 2:1145286/1‑150 (MQ=255) ccGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTg > 1:2133872/1‑101 (MQ=255) ccGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTg < 2:2133872/101‑1 (MQ=255) gCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAgggg > 2:1722576/1‑103 (MQ=255) gCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCt > 2:745307/1‑150 (MQ=255) gCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGCCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTgga > 1:2346259/1‑92 (MQ=255) gCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGCCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTgga < 2:2346259/94‑3 (MQ=255) cgaaaagacgcactggatcaccttcatgaagcgccccgcagcctaacccctccccctactactCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAgggg < 1:1036275‑M1/37‑1 (MQ=255) cgaaaagacgcactggatcaccttcatgaagcgccccgcagcctaacccctccccctactactCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAgggg > 2:1036275‑M1/64‑100 (MQ=255) cATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCtt < 1:309211/87‑1 (MQ=255) tGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAgtagta > 1:1419458/1‑93 (MQ=255) tGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAgtagta < 2:1419458/93‑1 (MQ=255) tGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTcgc < 1:745307/150‑1 (MQ=255) ggCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTcgcg > 2:165667/1‑150 (MQ=255) cTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGGGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGttt > 1:1438556/1‑150 (MQ=255) cTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGttt > 2:775481/1‑150 (MQ=255) ttttCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTAc < 2:1629424/150‑1 (MQ=255) tttCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTAcc < 1:165667/150‑1 (MQ=255) cgtcgATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGa < 1:775481/150‑1 (MQ=255) gtcgATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGAc > 2:1246934/1‑150 (MQ=255) gtcgATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGAc > 2:1474789/1‑150 (MQ=255) gtcgATGACCCAAGGGCATGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAGGGTGAGTCGGTGCGGGTGTTCGCGTTTACCGGaa > 2:1230341/1‑149 (MQ=38) tGACTCAAGAGCCTGGCTTGTGTTTCGCCGTGGCTATAGCTCTCCAATAACGC‑G‑CGTGTCGGCGGGCTTGAGTAGTAGGGGGAGGTGTTAGGTTTCGCAGCGCTTCATGAAGATGATCCAGTGAGTCTTTTCACGTTTACCGGACTtgtg < 2:564716/150‑1 (MQ=255) tGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTa < 1:1345567/139‑1 (MQ=255) tGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTa > 2:1345567/1‑139 (MQ=255) tGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTtgtg > 1:269693/1‑150 (MQ=255) cttcatgaagcgccccgcagcctaacccctccccctactactCAAGCCCGC‑G‑CATGTCGGCGGGCTTGa < 2:426483‑M1/27‑1 (MQ=255) cttcatgaagcgccccgcagcctaacccctccccctactactCAAGCCCGC‑G‑CATGTCGGCGGGCTTGa > 1:426483‑M1/43‑69 (MQ=255) ccAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAgtagta > 2:2243755/1‑73 (MQ=255) ccAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAgtagta < 1:2243755/73‑1 (MQ=255) cAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTa > 2:2231526/1‑85 (MQ=255) gCTTGTGTTTCGTCATGGCAATAGCTCGCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGttt < 1:818780/150‑1 (MQ=255) ttGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGATGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTtct > 1:190160/1‑150 (MQ=255) ttGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTAcc < 1:728038/124‑1 (MQ=255) ttGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTAcc > 2:728038/1‑124 (MQ=255) ttGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTtct < 2:1438556/150‑1 (MQ=255) tCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTTCTCATCGGt < 1:991231/150‑1 (MQ=255) ctccccctactactCAAGCCCGCCGACATG‑CG‑CGGGCATGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACa < 2:623611‑M1/114‑1 (MQ=255) cAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTTCTCATCGGTGAGagcaag < 2:269693/150‑1 (MQ=255) aaTAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTtc > 1:1091486/1‑132 (MQ=255) aaTAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTtc < 2:1091486/132‑1 (MQ=255) aaTAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTTCTCATCGGTGAGagcaagc > 2:207684/1‑150 (MQ=255) aaTAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTCCTCATCGGTGAGagcaagc > 1:188495/1‑150 (MQ=255) ctctCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTTCTCATCGGTGAGAGCAAGCAGCTc > 2:678939/1‑150 (MQ=255) ctcCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTTCTCAt < 2:927542/129‑1 (MQ=255) ctcCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTTCTCAt > 1:927542/1‑129 (MQ=255) tcCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTTCTCATCGGTGAGAGCAAGCAGCTCGCt > 1:173732/1‑150 (MQ=255) CATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCgggg > 2:718228‑M1/1‑56 (MQ=255) CATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCgggg < 1:718228‑M1/56‑1 (MQ=255) | GCCATTTGATGCATTCCCCCATCTACCTGGCAGATGAAGTACTCGCCGTCACCAACGACGATGCTGAGTTTCCCGGGATCTGCTTCATGGCCTTTTTCGTCGATGACCCAAGGGCCTGGCTTGTGTTTCGTCATGGCAATAGCTCTCCATGCCCGC‑G‑CATGTCGGCGGGCTTGAGTAGTAGGGGGAGGGGTTAGGCTGCGGGGCGCTTCATGAAGGTGATCCAGTGCGTCTTTTCGCGTTTACCGGACTTGTGGCCAAACAGGGGTTTCTCATCGGTGAGAGCAAGCAGCTCGCT > NC_002947/1739675‑1739969 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |