| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,787,179 | G→T | 5.2% | intergenic (+104/‑78) | tsf → / → pyrH | elongation factor Ts/uridylate kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,787,179 | 0 | G | T | 5.2% | 341.1 / 3.5 | 107 | intergenic (+104/‑78) | tsf/pyrH | elongation factor Ts/uridylate kinase |
| Reads supporting (aligned to +/- strand): ref base G (52/49); new base T (3/3); total (55/52) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
Only 100 of 107 total aligned reads displayed.
TTCGCTGCTGAAGTTGCCGCTCAGGTCGCTGCTGCCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGTGAGTGGTCGCCAACCTCGCTATAAACGCATTTTGCTCAAACTTAGCGGCGAG > NC_002947/1787031‑1787322 | ttCGCTGCTGAAGTTGCCGCTCAGGTCGCTGCTGCCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGc > 1:1148368/1‑150 (MQ=255)ttCGCTGCTGAAGTTGCCGCTCAGGTCGCTGCTGCCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGc > 2:1662726/1‑150 (MQ=255)ttCGCTGCTGAAGTTGCCGCTCAGGTCGCTGCTGCCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGc > 1:1918731/1‑150 (MQ=255) gctgctGAAGTTGCCGCTCAGGTCGCTGCTGCCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGt < 1:2210780/150‑1 (MQ=255) gctgctGAAGTTGCCGCTCAGGTCGCTGCTGCCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGt > 2:2219557/1‑150 (MQ=255) ctgAAGTTGCCGCTCAGGTCGCTGCTGCCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGCTTCGGTGCCa < 2:1743975/150‑1 (MQ=255) aaGTTGCCGCTCAGGTCGCTGCTGCCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGc < 1:992212/150‑1 (MQ=255) ttGCCGCTCAGGTCGCTGCTGCCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTAc > 1:2040772/1‑150 (MQ=255) ccGCTCAGGTCGCTGCTGCCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGt < 1:218082/150‑1 (MQ=255) cGCTCAGGTCGCTGCTGCCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGtt > 1:2399805/1‑150 (MQ=255) cGCTCAGGTCGCTGCTGCCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGtt < 2:1993273/150‑1 (MQ=255) gCTCAGGTCGCTGCTGCCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACa < 2:372346/146‑1 (MQ=255) gCTCAGGTCGCTGCTGCCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCAACGCTACa > 1:372346/1‑146 (MQ=255) cTCAGGTCGCTGCTGCCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGCTTCGGTGCCagcgaaga < 1:108427/145‑8 (MQ=255) cTCAGGTCGCTGCTGCCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAg < 1:2408393/150‑1 (MQ=255) gTCGCTGCTGCCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGc > 1:591067/1‑150 (MQ=255) gctgctGCCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGc < 2:591067/150‑1 (MQ=255) tgctgcCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCaa > 1:854347/1‑150 (MQ=255) gcCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAg < 1:1181978/150‑1 (MQ=255) cAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCa < 2:34052/136‑1 (MQ=255) cAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCa > 1:34052/1‑136 (MQ=255) cAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCG‑TGGCACCGCTTCGGTGCCagcga > 1:498761/1‑121 (MQ=255) aGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAAt < 2:35522/150‑1 (MQ=255) gACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGc > 1:2093545/1‑139 (MQ=255) gACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGc < 2:2093545/139‑1 (MQ=255) aCAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCCCGCGCGCAGCCTCTTTGTTAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGAGGTTCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAAttt > 1:904586/1‑150 (MQ=255) cAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGTCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGACATGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAAtttt < 1:1978286/150‑1 (MQ=255) aGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTc > 1:988885/1‑150 (MQ=255) ccccGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTa > 2:589475/1‑150 (MQ=255) ccccGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTa > 1:796180/1‑150 (MQ=255) ccGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTaaa > 2:2126255/1‑150 (MQ=255) ccGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTaaa > 2:216477/1‑150 (MQ=255) cGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACa > 1:1903638/1‑129 (MQ=255) cGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTaaaa < 2:2399805/150‑1 (MQ=255) cGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTaaaa < 2:1918731/150‑1 (MQ=255) cGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTaaaa < 2:509603/150‑1 (MQ=255) tCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTAcgc < 1:589475/150‑1 (MQ=255) gCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGCTTCGGTGCCa < 1:854612/96‑1 (MQ=255) ccccAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGGAAACAGCCCGCACGAATTTTCTAAAAGTAcgccgc < 1:2318378/150‑1 (MQ=255) cccAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCa > 1:953576/1‑150 (MQ=255) cccAAAGAGGCTGCCCGCTCACCCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCa < 2:1161916/150‑1 (MQ=255) ccAAAGAGGCTGCCCGCTCACGCGCGCAGCATCTTTGTAAAAACGGGGTGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGACCGCACGAATTTTCTAAAAGTACGCTGCAg > 2:1542993/1‑150 (MQ=255) cAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTa < 1:1023611/103‑1 (MQ=255) cAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTa > 2:1023611/1‑103 (MQ=255) cAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAgg > 1:292034/1‑150 (MQ=255) aaaGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGga < 1:2126255/150‑1 (MQ=255) aaaGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACAACTCCCTCTTCGCGGGCAACGAATCCATGCCACGCTACAGTTAGCAGACTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGga > 1:1975734/1‑150 (MQ=255) ggCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAGACGTGGTGGAGTGTATACGACTACCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGAc > 1:1261332/1‑150 (MQ=255) ggCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGAc < 1:216477/150‑1 (MQ=255) cTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGACGCGGTACCAAGCTACCGTTCACAGGCTCACCACAACCCTCACGAAAGTCCAAAAAGTACGCCGCAGGAGAGACTc > 2:266373/1‑150 (MQ=255) tGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCg < 1:1197937/150‑1 (MQ=255) tcccGCTCACGCGCGCATCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGc < 1:933703/149‑1 (MQ=255) gCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGc > 2:1351910/1‑150 (MQ=255) ccGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGGGGAGTTTATACGACTCCCTCTTCGCTGGCAGCGAAGAGGTGCCACTATACAGTTAGTATGCTGCAAACAGACCGCACGAATTTTGTAAAAGTACGCGGCAGGAGAGACTCGCaa > 2:933703/1‑150 (MQ=255) gCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATg > 2:1262963/1‑150 (MQ=255) aCGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTc > 1:176112/1‑150 (MQ=255) gcgcAGCCTCTTTGTCAAAACGGGGAGGCGTTTATAAACCTTCCTGTTCGCTGGCACCGAATCGATGCCACTCGACATTTAGCACGCGTCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTcagca > 2:2081547/1‑150 (MQ=255) gcgcAGCCTCTTTGTCAAAACGGGCAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTcagca < 1:2219557/150‑1 (MQ=255) cAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGCGAGACTCGCAATGGCTCAGCAGGt < 1:685832/150‑1 (MQ=255) cAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGt < 2:2040772/150‑1 (MQ=255) cAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGt < 1:2317943/150‑1 (MQ=255) aGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTc > 1:1974185/1‑142 (MQ=255) aGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTc < 2:1974185/142‑1 (MQ=255) gCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGTGa < 2:796180/150‑1 (MQ=255) ctctTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGTGAGt < 2:292034/150‑1 (MQ=255) tctTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGTGAGTg > 2:1826026/1‑150 (MQ=255) tttGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGTGAGTGGt < 2:1261500/150‑1 (MQ=255) tCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTTGCAGCCTGCTAAct > 2:498422/1‑80 (MQ=255) tCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTTGCAGCCTGCTAAct < 1:498422/81‑2 (MQ=255) aaaaCGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCgg > 2:484395/1‑49 (MQ=255) aaaaCGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCgg < 1:484395/49‑1 (MQ=255) aaaaCGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGTGAGTGGTCGCCaa < 1:334807/150‑1 (MQ=255) aaCGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGTGAGTGGTCGCCAAcc > 1:2409242/1‑150 (MQ=255) ggaggaGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGTGAGTGGTCGCCAACCTCGCt > 1:1570461/1‑150 (MQ=255) aggagTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTAc > 2:2101304/1‑95 (MQ=255) aggagTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTAc < 1:2101304/95‑1 (MQ=255) gagTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCa > 1:2056417/1‑99 (MQ=255) gagTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCa < 2:2056417/99‑1 (MQ=255) tttATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACa < 2:1588560/47‑1 (MQ=255) tttATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACa > 1:1588560/1‑47 (MQ=255) tttATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTaaaa > 1:1105565/1‑86 (MQ=255) tttATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTaaaa < 2:1105565/86‑1 (MQ=255) tttATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGTGAGTGGTCGCCAACCTCGCTATAAACg > 2:1422047/1‑150 (MQ=255) ataCGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGGGACTCGCAATGGCTCAGCAGGTGAGTGGTCGCCAACCTCGCTATAAACGCAt > 1:1267167/1‑150 (MQ=255) aCTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGTGAGTGGTCGCCAACCTCGCTATAAACGCATTTTGc < 1:1351910/150‑1 (MQ=255) tCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGgagaga > 1:917087/1‑93 (MQ=255) tCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGgagaga < 2:917087/93‑1 (MQ=255) tCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGTGAGTGGTCGCCAACCTCGCTATAAACGCATTTTGCTc > 1:403408/1‑150 (MQ=255) ccTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTAcg < 1:1299719/79‑1 (MQ=255) ccTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTAcg > 2:1299719/1‑79 (MQ=255) ccTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGTGAGTGGTCGCCAACCTCGCTATAAACGCATTTTGCTCaa > 1:240671/1‑150 (MQ=255) ccTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATATTCTAAAAGTACGCCGCAGGAGAGCCTCGCAATGGCTCAGCAGGTGAGTGGTCGCCAACCTCGCTATAAACGCATTTTGCTCaa > 2:1736770/1‑150 (MQ=255) ctctTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGTGAGTGGTCGCCAACCTCGCTATAAACGCATTTTGCTCaaa > 2:2017714/1‑150 (MQ=255) tctTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAAt > 1:1768939/1‑97 (MQ=255) tctTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAAt < 2:1768939/97‑1 (MQ=255) cgcgGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGTGAGTGGTCGCCAACCGCGCTATAAACGCATTTTGCTCAAACTTAg < 2:2250532/150‑1 (MQ=255) cGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGTGAGTGGTCGCCAACCTCGCTATAAACGCATTTTGCTCAAACTTAg < 1:1662726/150‑1 (MQ=255) gCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCTGCACGAATGTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGTGAGTGGTCGCCAACCTCGCTATAAACGCATTTTGCTCAAACTTAgc > 2:335698/1‑150 (MQ=255) tGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGTGAGTGGTCGCCAACCTCGCTATAAACGCATTTTGCTCAAACTTAgcgg < 2:1261332/150‑1 (MQ=255) aCCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGTGAGTGGTCGCCAACCTCGCTATAAACGCGTTTTGCTCAAACTTAGCGGCGAg > 2:1862761/1‑150 (MQ=255) | TTCGCTGCTGAAGTTGCCGCTCAGGTCGCTGCTGCCAAGCAGTAAGACAGCCCCGTCTGTCGCCCCAAAGAGGCTGCCCGCTCACGCGCGCAGCCTCTTTGTCAAAACGGGGAGGAGTTTATACGACTCCCTCTTCGCTGGCACCGAAGCGGTGCCACGCTACAGTTAGCAGGCTGCAAACAGCCCGCACGAATTTTCTAAAAGTACGCCGCAGGAGAGACTCGCAATGGCTCAGCAGGTGAGTGGTCGCCAACCTCGCTATAAACGCATTTTGCTCAAACTTAGCGGCGAG > NC_002947/1787031‑1787322 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |