| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,825,133 | G→C | 11.0% | R55G (CGC→GGC) | mutS ← | DNA mismatch repair protein MutS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,825,133 | 0 | G | C | 11.0% | 274.5 / 21.4 | 92 | R55G (CGC→GGC) | mutS | DNA mismatch repair protein MutS |
| Reads supporting (aligned to +/- strand): ref base G (38/43); new base C (4/6); total (42/50) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.48e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.79e-01 | |||||||||||
TCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTG > NC_002947/1824985‑1825279 | tCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCgcgg > 1:1462985/1‑150 (MQ=255) aCCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATTGGGATGGACTGGCCGGCCGAC‑TGACCgcgggcg < 1:193286/150‑1 (MQ=255) cccTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGGTCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCCCGCGGTCAgt < 2:1249855/150‑2 (MQ=255) cccTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGCGCTTGACCAGCTTGGCCAGGTAGCCTTCCAACGAATGGAACGGAATCCAGAACATGGGCGTGGACTGGCGGGCCGGCAGGACCG‑GGGCGGTCatg > 2:1720316/1‑148 (MQ=255) cccTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAgg < 2:917933/150‑1 (MQ=255) cccTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAgg < 2:245534/150‑1 (MQ=255) cccTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCCCGCGGTCAgt < 1:2380316/150‑2 (MQ=255) cccTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCCCGCGGTCAgt < 2:745899/150‑2 (MQ=255) ccTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAggg < 1:1735876/150‑1 (MQ=255) cTTGCTGGGGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAACGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAg > 2:1710282/1‑147 (MQ=255) cTTGCTGGGGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAACGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAg < 1:1710282/147‑1 (MQ=255) ttGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAAGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTg > 1:1977383/1‑150 (MQ=255) gCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGat < 1:1028380/150‑1 (MQ=255) cTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGata < 2:1462985/150‑1 (MQ=255) tggtggCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGatat > 2:2294335/1‑150 (MQ=255) ggtggCGGGGTCGCCGATCTGCTCACAGATCACCACCAACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATCGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATc < 1:633198/150‑1 (MQ=255) gtggCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATcc < 1:624139/150‑1 (MQ=255) tggCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCca > 1:261522/1‑150 (MQ=255) ggCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCcag < 1:1381668/150‑1 (MQ=255) gTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGAAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGttt > 2:2038809/1‑150 (MQ=255) tCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCcagc < 1:1379154/144‑1 (MQ=255) tCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCcagc > 2:1379154/1‑144 (MQ=255) tCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTc < 1:1720316/150‑1 (MQ=255) gCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATc < 2:1672225/138‑1 (MQ=255) gCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATc > 1:1672225/1‑138 (MQ=255) aTCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGcc > 2:2082762/1‑150 (MQ=255) cTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCttttt > 1:1456665/1‑150 (MQ=255) cTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCttttt > 2:144436/1‑150 (MQ=255) tCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTc < 1:19407/150‑1 (MQ=255) acaGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGc > 1:1255021/1‑150 (MQ=255) acaGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGc > 1:1842428/1‑150 (MQ=255) caccGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTa > 1:38661/1‑150 (MQ=255) tCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGAtc > 1:1500698/1‑150 (MQ=255) tCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGAtc > 1:1193150/1‑150 (MQ=255) cGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGt > 2:1138701/1‑150 (MQ=255) gAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGt > 1:872790/1‑99 (MQ=255) gAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGt < 2:872790/99‑1 (MQ=255) cTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGaa < 2:38661/150‑1 (MQ=255) ttGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAg < 1:1138701/150‑1 (MQ=255) aCCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCg < 1:2111503/150‑1 (MQ=255) ccAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGc < 2:1208024/150‑1 (MQ=255) cAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGcc < 2:781611/150‑1 (MQ=255) ggCCAGGTAGCCTTCCAGCGAATGGAACGAAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCg < 1:2038809/150‑1 (MQ=255) cAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTcgcg < 2:821810/100‑1 (MQ=255) cAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTcgcg > 1:821810/1‑100 (MQ=255) ggTAGCCTTCCAGCGAATGGAATGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGa > 2:485220/1‑150 (MQ=255) ccTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATc < 2:1977383/150‑1 (MQ=255) cTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCa > 2:2050022/1‑150 (MQ=255) ttCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGc > 1:1601258/1‑93 (MQ=255) ttCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGc < 2:1601258/93‑1 (MQ=255) tCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGc < 1:144436/150‑1 (MQ=255) gCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGt > 2:1294402/1‑150 (MQ=255) ggAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGt < 1:1227165/150‑1 (MQ=255) aaCGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGc > 2:135811/1‑150 (MQ=255) aCGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCt < 1:2294335/150‑1 (MQ=255) aCGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCACATGCGGTCGAACATCAGCTGGTCCGGGTGCt < 2:1842428/150‑1 (MQ=255) cGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGt < 1:2378944/99‑1 (MQ=255) cGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGt > 2:2378944/1‑99 (MQ=255) cGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCa > 1:228359/1‑150 (MQ=255) cGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCACATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCa < 2:261522/150‑1 (MQ=255) cacaTTGGGATGTACTGGCCGGCCGAC‑TGACCCCTGGCGGTCAGGGTGATACCCAGCAGTTTCGCGGCCTTTTTCGCCTCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGc < 1:691366/150‑1 (MQ=255) acaTGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGaa > 1:1361272/1‑100 (MQ=255) acaTGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGaa < 2:1361272/100‑1 (MQ=255) aTGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCgg < 2:684380/131‑1 (MQ=255) aTGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCgg > 1:684380/1‑131 (MQ=255) ggggATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCa < 2:936596/150‑1 (MQ=255) ggggATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCa < 2:1255021/150‑1 (MQ=255) ggggATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGGCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCa > 2:1282813/1‑150 (MQ=255) gggATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAg < 1:485220/150‑1 (MQ=255) ggATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGt > 1:1685889/1‑150 (MQ=255) gaaTGGAGTAGCCGGCCGAC‑TTAACGCGGGCGGGCAGGGTGATATGCAGCAGTTTCGCGGCATTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAACTGGTCCGGGTGGTGGTTTTTCACCTTCCAGt > 2:1079454/3‑150 (MQ=255) aCTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTActgct < 2:1685889/150‑1 (MQ=255) gccggccgAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCa > 2:2021847/1‑138 (MQ=255) gccggccgAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCa < 1:2021847/138‑1 (MQ=255) gccggccgAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGcat > 1:1382984/1‑150 (MQ=255) gccggccgAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTCTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCa > 1:238089/1‑131 (MQ=255) gcaggccgAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTCTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCa < 2:238089/128‑1 (MQ=255) cggccgAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTg < 2:1830061/121‑1 (MQ=255) cggccgAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTg > 1:1830061/1‑121 (MQ=255) cggccgAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGcatca > 1:364684/1‑150 (MQ=255) gccgAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCatcatc < 1:2082762/150‑1 (MQ=255) cgAC‑TTACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCgg > 2:196433/1‑150 (MQ=255) ccc‑TGACCGCCCGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCt > 2:331554/3‑115 (MQ=255) ccc‑TGACCGCCCGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCt < 1:331554/113‑1 (MQ=255) ccc‑TGACCGCCCGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCggg > 2:2095393/3‑150 (MQ=255) cc‑TGACCGCCCGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGAtc > 1:857791/2‑68 (MQ=39) cc‑TGACCGCCCGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGAtc < 2:857791/67‑1 (MQ=255) cc‑TGACCGCCCGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCgg > 2:570237/2‑109 (MQ=255) cc‑TGACCGCCCGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCgg < 1:570237/108‑1 (MQ=255) c‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGgt < 2:1500698/150‑1 (MQ=255) cttaCCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGgt < 1:196433/147‑1 (MQ=255) gACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGgtgt < 2:228359/150‑1 (MQ=255) aCCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCg > 2:1348984/1‑47 (MQ=255) aCCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCg < 1:1348984/47‑1 (MQ=255) cgcgGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGtgtgtg > 2:699592/1‑150 (MQ=255) gggcggTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCgg > 2:2290000/1‑100 (MQ=255) gggcggTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCgg < 1:2290000/100‑1 (MQ=255) | TCCACCGGGCCCTTGCTGGTGGCGGGGTCGCCGATCTGCTCACAGATCACCACCGACTCGCCGAGCTTGACCAGCTTGGCCAGGTAGCCTTCCAGCGAATGGAACGGAATCCCGCACATGGGGATGGACTGGCCGGCCGAC‑TGACCGCGGGCGGTCAGGGTGATATCCAGCAGTTTCGCGGCCTTTTTCGCATCTTCGTAGAAGATCTCGTAGAAGTCGCCCATGCGGTAGAACATCAGCTGGTCCGGGTGCTGGTTTTTCAGCTTCCAGTACTGCTGCATCATCGGGGTGTGTG > NC_002947/1824985‑1825279 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |