Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,859,156 A→T 8.2% intergenic (+34/+67) PP_1661 → / ← PP_1662 dehydrogenase/hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,859,1560AT 8.2% 409.8 / 19.5 132intergenic (+34/+67)PP_1661/PP_1662dehydrogenase/hypothetical protein
Reads supporting (aligned to +/- strand):  ref base A (64/57);  new base T (4/7);  total (68/64)
Fisher's exact test for biased strand distribution p-value = 3.55e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 134 total aligned reads displayed.

CCAGCAAGGTGAGTTGCAGCTGTGCATCAATGACGACCTGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGGTGTGCTTCGTGTTCGTTATGGAACATGCCC  >  NC_002947/1859008‑1859304
                                                                                                                                                    |                                                                                                                                                    
ccAGCAAGGTGAGTTGCAGCTGTGCATCAATGACGACCTGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAAt                                                                                                                                                     >  1:1382777/1‑150 (MQ=255)
 cAGCAAGGTGAGTTGCAGCTGTGCATCAATGACGACCTGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATg                                                                                                                                                    >  2:1523649/1‑150 (MQ=255)
      aGGTGAGTTGCAGCTGTGCATCAATGACGACCTGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATAGCAACCCCAAAATGCTGCGGCATTGCCgga                                                                                                                                               <  2:197368/150‑3 (MQ=255)
       ggTGAGTTGCAGCTGTGCATCAATGACGACCTGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCgcag                                                                                                                                              >  1:1585780/1‑150 (MQ=255)
             ttGCAGCTGTGCATCAATGACGACCTGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCAtttt                                                                                                                                        >  1:1274869/1‑150 (MQ=255)
               gCAGCTGTGCATCCATGACGAACTGGACGGCCGTTACGGGCGTCGCGTGATCGATAACCTGGTCAGCCTGTCTGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCCGCAATGCCGCAGCATTTTgg                                                                                                                                      >  2:1834944/1‑150 (MQ=255)
               gCAGCTGTGCATCAATGACGACCTGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCTGCGGCAttgccg                                                                                                                                      <  1:568322/150‑5 (MQ=255)
               gCAGCTGTGCATCAATGACGACCTGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCAAAATGCTGCGGCATTGCCGGAGCAtcgtgg                                                                                                                                      <  2:2000566/150‑6 (MQ=38)
                cAGCTGTGCATCAATGACGACCTGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCAAAATGCTGCGGCATTGCCGGAGCAtcgtggg                                                                                                                                     <  2:1773081/150‑7 (MQ=38)
                   cTGTGCATCAATGACGACCTGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGtt                                                                                                                                  >  2:1282639/1‑150 (MQ=255)
                       gCATCAATGACGACCTGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATAGCAACCCCAAAATGCTGCGGCATTGCCGGAGCATCGTGGGGTTGcca                                                                                                                              <  2:849330/150‑3 (MQ=37)
                        cATCAATGACGACCTGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGTGGGGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCa                                                                                                                             <  1:1021105/150‑1 (MQ=255)
                        cATCAATGACGACCTGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCa                                                                                                                             <  2:1936750/150‑1 (MQ=255)
                         aTCAATGACGACCTGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCTGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTggg                                                                                                                                     <  1:1752812/141‑1 (MQ=255)
                         aTCAATGACGACCTGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCTGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTggg                                                                                                                                     >  2:1752812/1‑141 (MQ=255)
                         aTCAATGACGACCTGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCAc                                                                                                                            >  2:244065/1‑150 (MQ=255)
                                    ccTGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGc                                                                                                                 <  1:1518038/150‑1 (MQ=255)
                                    ccTGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGc                                                                                                                 <  2:2369612/150‑1 (MQ=255)
                                      tGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGa                                                                                                               <  2:2246198/150‑1 (MQ=255)
                                      tGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGa                                                                                                               <  1:20445/150‑1 (MQ=255)
                                          cGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCa                                                                                                           >  2:2283938/1‑150 (MQ=255)
                                             gCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAggg                                                                                                        <  1:1523649/150‑1 (MQ=255)
                                             gCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAggg                                                                                                        <  2:301365/150‑1 (MQ=255)
                                               gTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGt                                                                                                      <  1:1282639/150‑1 (MQ=255)
                                                 tACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTc                                                                                                    <  2:2036319/150‑1 (MQ=255)
                                                 tACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTc                                                                                                    <  1:2283938/150‑1 (MQ=255)
                                                         tGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAgggg                                                                                                       >  1:900727/1‑139 (MQ=255)
                                                         tGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAgggg                                                                                                       <  2:900727/139‑1 (MQ=255)
                                                         tGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAAt                                                                                            <  2:332921/150‑1 (MQ=255)
                                                         tGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAAt                                                                                            >  2:577698/1‑150 (MQ=255)
                                                           gCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATgg                                                                                          <  1:2197862/150‑1 (MQ=255)
                                                              tGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCa                                                                                       >  2:1564905/1‑150 (MQ=255)
                                                              tGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCa                                                                                       >  1:301870/1‑150 (MQ=255)
                                                              tGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCa                                                                                       <  1:411496/150‑1 (MQ=255)
                                                               gAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAg                                                                                      <  1:1937603/150‑1 (MQ=255)
                                                                aGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAgg                                                                                     >  1:1051342/1‑150 (MQ=255)
                                                                aGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCACCGATGCTCCGGCAATGCCGCAGCATTGTTTGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAgg                                                                                     <  1:296487/150‑1 (MQ=255)
                                                                 gCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGGTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAggg                                                                                    <  2:1127861/150‑1 (MQ=255)
                                                                   gATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTc                                                                                  >  2:951188/1‑150 (MQ=255)
                                                                     tAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCAt                                                                                >  2:2082257/1‑150 (MQ=255)
                                                                       cccggggCTGCCTGTCGGTAGAGGTGCGTGTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGGATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATtg                                                                              <  2:333300/146‑1 (MQ=255)
                                                                        ccTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATtgt                                                                             >  1:2227439/1‑150 (MQ=255)
                                                                         cTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCt                                                                                                                               <  1:1181285/99‑1 (MQ=255)
                                                                         cTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCt                                                                                                                               >  2:1181285/1‑99 (MQ=255)
                                                                         cTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCCGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATtgtg                                                                            >  2:774636/1‑150 (MQ=255)
                                                                          tGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATtgtgt                                                                           <  2:2167308/150‑1 (MQ=255)
                                                                           gggCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATtgtgtg                                                                          <  1:951188/150‑1 (MQ=255)
                                                                               aGCCTGTCGTTATAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGgcgc                                                                      >  2:602713/1‑150 (MQ=255)
                                                                                  cTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCt                                                                   >  2:2084405/1‑150 (MQ=255)
                                                                                       ggTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGttt                                                              <  2:301870/150‑1 (MQ=255)
                                                                                         tAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGTTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTc                                                            >  2:185185/1‑150 (MQ=255)
                                                                                            agGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAACGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAg                                                         <  1:25404/150‑1 (MQ=255)
                                                                                             ggTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAgg                                                        <  2:1382777/150‑1 (MQ=255)
                                                                                              gTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGt                                                       >  1:1075513/1‑150 (MQ=255)
                                                                                              gTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGt                                                       >  2:21058/1‑150 (MQ=255)
                                                                                                   tttCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCa                                                  >  2:1759704/1‑150 (MQ=255)
                                                                                                    ttCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCaa                                                 <  1:1759704/150‑1 (MQ=255)
                                                                                                          gCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCaa                                                                                             <  2:2009737/100‑1 (MQ=255)
                                                                                                          gCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCaa                                                                                             >  1:2009737/1‑100 (MQ=255)
                                                                                                          gCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCaa                                           >  2:2012175/1‑150 (MQ=255)
                                                                                                             gtgcAGGCCCTGTTATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGCGTTGCCCACTGCGCCCAGGCGAGGCAGGGTTTCGCCGCAATGGGCAGGGGCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAAcgc                                        >  2:211592/1‑150 (MQ=255)
                                                                                                              tgtAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGtt                                                               >  2:1732190/1‑126 (MQ=255)
                                                                                                              tgtAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGtt                                                               <  1:1732190/126‑1 (MQ=255)
                                                                                                               gtAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCgg                                      <  2:1063239/150‑1 (MQ=255)
                                                                                                                  ggCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTAt                                   >  1:489154/1‑150 (MQ=255)
                                                                                                                   gCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTAtt                                  >  1:1880426/1‑150 (MQ=255)
                                                                                                                   gCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTAtt                                  >  1:368346/1‑150 (MQ=255)
                                                                                                                    cccTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTc                                                                                                            >  2:1677655/1‑75 (MQ=255)
                                                                                                                    cccTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTg                                 <  2:2337389/150‑1 (MQ=255)
                                                                                                                    cccTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTg                                 >  2:555091/1‑150 (MQ=255)
                                                                                                                     ccTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTgg                                >  1:1182810/1‑150 (MQ=255)
                                                                                                                     ccTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGGCATTGTGTGACGCGCTTGTTGACCAGGTCTTCAAGCGCAACGCGGTATTgg                                >  2:1109378/1‑150 (MQ=255)
                                                                                                                      cTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCTGTATTGgt                               <  2:441402/150‑1 (MQ=255)
                                                                                                                      cTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGgt                               <  1:2363529/150‑1 (MQ=255)
                                                                                                                      cTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATAGTGTGACGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGgt                               <  1:1161395/150‑1 (MQ=255)
                                                                                                                       tGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGt                                                                                                                                   <  1:1009585/49‑1 (MQ=255)
                                                                                                                       tGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGt                                                                                                                                   >  2:1009585/1‑49 (MQ=255)
                                                                                                                       tGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGAGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGgtg                              >  2:1647697/1‑150 (MQ=255)
                                                                                                                        gTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGgtgt                             <  2:1933551/150‑1 (MQ=255)
                                                                                                                             ggCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGGTGTGCTTc                        <  1:555091/150‑1 (MQ=255)
                                                                                                                              gCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGGTGTGCTTCg                       >  2:8567/1‑150 (MQ=255)
                                                                                                                              gCAACCCCAAAATGCTGCGGCATTGCCGGAGCATCGTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGGTGTGCTTCg                       >  2:591188/1‑150 (MQ=38)
                                                                                                                                aaCCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCgg                                      >  2:1584014/1‑133 (MQ=255)
                                                                                                                                aaCCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCgg                                      <  1:1584014/133‑1 (MQ=255)
                                                                                                                                 aCCCCACGATGATCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGGTGTGCTTCgtgt                    >  2:1793105/1‑150 (MQ=255)
                                                                                                                                   cccACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGGTGTGCTTCGTGTTc                  >  2:1395952/1‑150 (MQ=255)
                                                                                                                                    ccaaaaTGCTGCGGCATTGCCGGAGCATCGTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGGTGTGCTTCGTGTTc                  >  1:2105546/6‑149 (MQ=38)
                                                                                                                                    ccACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATtgtgtg                                                                          <  1:1908791/93‑1 (MQ=255)
                                                                                                                                      aCGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCAtt                                                                               >  1:1065495/1‑86 (MQ=255)
                                                                                                                                      aCGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCAtt                                                                               <  2:1065495/86‑1 (MQ=255)
                                                                                                                                       cGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGGTGTGCTTCGTGTTCGTTa              <  1:774636/150‑1 (MQ=255)
                                                                                                                                        gATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGTTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGGTGTGCTTCGTGTTCGTTAt             <  1:185185/150‑1 (MQ=255)
                                                                                                                                        gATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCCCTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGGTGTGCTTCGTGTTCGTTAt             <  1:1109378/150‑1 (MQ=255)
                                                                                                                                          tgctgcGGCATTGCCGGAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGGTGTGCTTCGTGTTCGTTATgg           <  1:1262706/150‑1 (MQ=255)
                                                                                                                                          tGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGGTGTGATTCGTGTTCGTTATgg           <  1:8567/150‑1 (MQ=255)
                                                                                                                                             tCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGTTCGTGGTGTGGCGCGCTGGTCCTGACGGTCCTAATGCTTAGCTCTGTTTTGGTGTGCTTCTTGTTGGTTATGGAAc        >  1:2341243/1‑150 (MQ=255)
                                                                                                                                             tCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGGTGTGCTTCGTGTTCGTTATGGAAc        >  1:352379/1‑150 (MQ=255)
                                                                                                                                                 gCAATGCCGCAGCATTTTGGTGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAAGTGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCGTCAAGCTCAACGCGGTATTGGTGTGCTTCGTGTTCGTTATGGAACATGc    <  1:1564905/150‑1 (MQ=255)
                                                                                                                                                  cAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGgtgt                             >  1:802519/1‑124 (MQ=255)
                                                                                                                                                  cAATGCCGCAGCATTGTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGgtgt                             <  2:802519/124‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
CCAGCAAGGTGAGTTGCAGCTGTGCATCAATGACGACCTGGACGGGCGTTACGGGGCTGGCCTGAGCGATAACCTGGGCAGCCTGTCGGTAGAGGTGCGTTTCGGGGCGGTGTAGGCCCTGTCATGGCAACCCCACGATGCTCCGGCAATGCCGCAGCATTTTGGGGTTGCTCACTGAGCCCAGGCGAGTCAGGGGTTCGCCGCAATGGGCAGGGTCATTGTGTGGCGCGCTGGTTTTCCAGGTCTTCAAGCTCAACGCGGTATTGGTGTGCTTCGTGTTCGTTATGGAACATGCCC  >  NC_002947/1859008‑1859304

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑