| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,955,253 | T→A | 12.2% | intergenic (+40/‑153) | PP_1752 → / → PP_1753 | hypothetical protein/DMT superfamily permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,955,253 | 0 | T | A | 12.2% | 290.6 / 28.6 | 107 | intergenic (+40/‑153) | PP_1752/PP_1753 | hypothetical protein/DMT superfamily permease |
| Reads supporting (aligned to +/- strand): ref base T (46/48); new base A (5/8); total (51/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.20e-01 | |||||||||||
Only 100 of 109 total aligned reads displayed.
TTGCCCCTTGGACGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACGGGCTTGATCGAGG > NC_002947/1955104‑1955400 | ttGCCCCTTGGACGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGttt > 2:1538898/1‑150 (MQ=255) cccTTGGACGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTAccc > 1:1903759/1‑150 (MQ=255) ccTTGGACGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCcg > 1:1926064/1‑150 (MQ=255) ccTTGGACGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCcg > 1:1320462/1‑150 (MQ=255) cTTGGACGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTAAACCcgc < 1:438517/150‑1 (MQ=255) ggACGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGaa > 1:1277641/1‑150 (MQ=255) ggACGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTAAACCCGCGaa < 1:1820444/150‑1 (MQ=255) ggACGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTAAACCCGCGaa < 1:1748004/150‑1 (MQ=255) ggACGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTAAACCCGCGaa < 1:2393606/150‑1 (MQ=255) gACGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCCGCTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGaaa < 2:2371656/150‑1 (MQ=255) aCGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑g < 2:1283148/150‑1 (MQ=255) cGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGACGGCGGTAAGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAg‑gg > 1:1024062/1‑150 (MQ=255) cGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑gg < 1:873599/150‑1 (MQ=255) cTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTGCTGACCCTTTCGCGGGTAAACCCGCGaagcggc < 1:651671/150‑6 (MQ=38) gtggAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAg > 2:1797305/1‑150 (MQ=255) ggCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAg > 2:1922119/1‑150 (MQ=255) cAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCCTTTCGCGGGTAAACCcgc < 2:1755401/131‑1 (MQ=255) cAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCCTTTCGCGGGTAAACCcgc > 1:1755401/1‑131 (MQ=255) aaTGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑gg > 2:2232451/1‑136 (MQ=255) aaTGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑gg < 1:2232451/136‑1 (MQ=255) aaTGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCaa > 1:1817912/1‑150 (MQ=255) tGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAaca > 2:331093/1‑150 (MQ=255) gACAAGCGCTGGGCGCGGGTGAAGGTGGTACGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAacac > 1:315654/1‑150 (MQ=255) aaGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTc > 2:255206/1‑150 (MQ=255) aaGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTc > 2:1092150/1‑150 (MQ=255) cgcTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCAc < 2:1809705/150‑1 (MQ=255) cgcTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCAc < 2:1809727/150‑1 (MQ=255) ggCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTAAACCCGCGaa > 1:1628004/1‑119 (MQ=255) gcgGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCAt < 1:1653945/150‑1 (MQ=255) gggTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGTGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGc < 2:315654/150‑1 (MQ=255) gggTGAAGGTGGTGCGCACAATCAACCAGGCACTTGAGGCGGCGTTTGCCAAGCACAAGAAACAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGc < 1:747104/150‑1 (MQ=255) ggTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTAcc < 1:104082/107‑1 (MQ=255) tGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGcccc < 1:1540676/150‑1 (MQ=255) ggtggtGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAG‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCaaaa < 2:1024062/150‑1 (MQ=255) ggtgCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGaa < 2:1277641/150‑1 (MQ=255) gcgcACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGa < 2:1320462/150‑1 (MQ=255) gcACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTAcc > 1:923121/1‑93 (MQ=255) gcACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGAcc > 1:1682733/1‑150 (MQ=255) gcACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAACCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATACCCCGACAGAATGAcc > 2:1043707/1‑150 (MQ=255) cacaATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGTCCt > 1:1008911/1‑150 (MQ=255) aaTCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCtgat > 1:2087596/1‑150 (MQ=255) aaTCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCtgat < 2:293177/150‑1 (MQ=255) cAACCAGGCCGTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGaa < 1:809117/150‑1 (MQ=255) aCCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAg < 1:612777/103‑1 (MQ=255) aCCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAg > 2:612777/1‑103 (MQ=255) ccAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTc > 2:739525/1‑150 (MQ=255) cAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCt > 1:941598/1‑150 (MQ=255) aGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTGCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCtt < 1:2290285/150‑1 (MQ=255) ggCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAAAACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCttt > 1:505055/1‑150 (MQ=255) cTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTtctc < 2:1682733/150‑1 (MQ=255) ttGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCg > 2:1272605/1‑150 (MQ=255) aGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCa < 1:426484/150‑1 (MQ=255) gcggcgTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCAct > 2:815623/1‑150 (MQ=255) cggcgTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCActc < 2:1926064/150‑1 (MQ=255) cgTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTcc < 2:2087596/150‑1 (MQ=255) gTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCa > 1:811348/1‑150 (MQ=255) ccAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGtc < 2:1903759/150‑1 (MQ=255) cAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGtct > 1:2095553/1‑150 (MQ=255) aGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTctct < 1:331093/150‑1 (MQ=255) aGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTctct > 2:207970/1‑150 (MQ=255) aGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTctct < 1:1538898/150‑1 (MQ=255) aGCACAAGAAATAGCCGAAGGTGAGGTTGACTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTctct > 2:884652/1‑150 (MQ=255) acaAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGaa > 1:1382454/1‑106 (MQ=255) acaAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGaa < 2:1382454/106‑1 (MQ=255) caAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGtcc > 1:2053991/1‑150 (MQ=255) aaGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGtcct > 1:1807765/1‑150 (MQ=255) aGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGtcctc < 1:739525/150‑1 (MQ=255) aGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGACGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGtcctc > 1:1004945/1‑150 (MQ=255) aaaTAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGAc > 2:2216715/1‑105 (MQ=255) aaaTAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGAc < 1:2216715/105‑1 (MQ=255) ccGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGtcctc < 2:54048/142‑1 (MQ=255) ccGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCg > 1:2044445/1‑150 (MQ=255) ccGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGGCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGtcctc > 1:54048/1‑142 (MQ=255) gAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTa < 1:428486/150‑1 (MQ=255) tGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCGCAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCtttt > 1:300708/1‑107 (MQ=255) tGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCtttt < 2:300708/107‑1 (MQ=255) tGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAAtt < 1:1272605/150‑1 (MQ=255) gAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTc > 1:624460/1‑150 (MQ=255) ggTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGAGAAA‑TGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTcaa < 1:1934445/150‑1 (MQ=255) ggTTGCCTGTTCTGGACGCCTCGCCGTTTTACCCGCGAAA‑GGGTGAGCACAGGCAACCCCCCCACCCAGCCACGCCTCAAAAGCATGACCTGACGAATTCTTTCCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTcaa < 2:1004945/150‑1 (MQ=255) gTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTcaac < 2:1817912/150‑1 (MQ=255) ttGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTcaaca > 1:1402384/1‑150 (MQ=255) cTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAAccc < 2:1807765/150‑1 (MQ=255) tGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAAcccc > 2:1504294/1‑150 (MQ=255) ttCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAAc > 1:1609770/1‑127 (MQ=255) ttCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAAc < 2:1609770/127‑1 (MQ=255) ggCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCcaccac < 1:884652/150‑1 (MQ=255) ccGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACgg < 2:2095553/150‑1 (MQ=255) ccGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACgg > 2:654958/1‑150 (MQ=255) ccGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACgg < 1:207970/150‑1 (MQ=255) cctttCGCGGGTAAACCCGCGAAG‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCtgat > 1:740616/4‑78 (MQ=25) cctttCGCGGGTAAACCCGCGAAG‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCtgat < 2:740616/75‑1 (MQ=25) cctttCGCGGGTAAACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACggg > 2:1663026/4‑150 (MQ=255) cGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACggg > 2:548601/1‑150 (MQ=255) gcgtCGCGGGTTTCCCCTCTAAA‑GGCTCAGCACAGGCATCACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACGGGc < 2:505055/147‑1 (MQ=255) ccTTCGCGGGTTTACCCGCGAAAGGGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACggg > 2:513452/2‑150 (MQ=255) tttCGCGGGTAAACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACGGGCt > 1:1337882/2‑150 (MQ=255) gcgGGTTTACCCGCGAAC‑GGGCCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACGGGCTTGAt > 2:1235372/1‑150 (MQ=255) ggTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCTGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACGGGCTTGATCGa < 1:1797305/150‑1 (MQ=255) tttACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAAACACCACCACGGGCCTCATCGAgg > 2:748910/1‑150 (MQ=255) | TTGCCCCTTGGACGCTGGTGGAGGCCAATGACAAGCGCTGGGCGCGGGTGAAGGTGGTGCGCACAATCAACCAGGCGCTTGAGGCGGCGTTTGCCAAGCACAAGAAATAGCCGAAGGTGAGGTTGCCTGTTCTGGCCGCTTCGCGGGTTTACCCGCGAAA‑GGGTCAGCACAGGCAACACCTCCACCCAGCCATGCCCCAAAAGAATGACCTGATGAATTCTTTTCTCGGCACTCTCCACCGTCTCTGTCCTCCAACCCCGTAGAATTCAACAACCCCCACCACGGGCTTGATCGAGG > NC_002947/1955104‑1955400 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |