| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,977,279 | C→G | 5.7% | R300R (CGC→CGG) | PP_1770 → | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,977,279 | 0 | C | G | 5.7% | 315.5 / 5.1 | 100 | R300R (CGC→CGG) | PP_1770 | 3‑phosphoshikimate 1‑carboxyvinyltransferase |
| Reads supporting (aligned to +/- strand): ref base C (48/45); new base G (3/3); total (51/49) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 104 total aligned reads displayed.
GTCCTGCGCACGCTTGATACATTTCGCAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGCCGAAGGTACTACCGA > NC_002947/1977139‑1977428 | gTCCTGCGCACGCTTGATACATTTCGCAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTAt < 1:2171846/150‑1 (MQ=255) tCCTGCGCACGCTTGATACATTTCGCAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAACTCACGGCCCGGCGGCCCttta < 2:1730803/150‑4 (MQ=255) ccTGCGCACGCTTGATACATTTCGCAGTGATCTCGACGCCCTGCGCGAAGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTAtgt < 1:1730163/150‑1 (MQ=255) cTGCGCACGCTTGATACATTTCGCAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTAtgtg > 1:1588803/1‑150 (MQ=255) tGCGCACGCTTGATACATTTCGCAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTgg < 2:1169141/150‑1 (MQ=255) cgcACGCTTGATACATTTCGCAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGAc < 2:2077060/150‑1 (MQ=255) gcACGCTTGATACATTTCGCAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACg > 1:2019270/1‑150 (MQ=255) aCGCTTGATACATTTCGCAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCt > 2:1555215/1‑150 (MQ=255) gATACATTTCGCAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAAc < 2:2337901/150‑1 (MQ=255) tACATTTCGCAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGc < 1:1080219/150‑1 (MQ=255) tACATTTCGCAGTGATCTCGAAGCCCTGCGCGACGCGATCGCTGAAGGGGGTTGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGc > 2:493322/1‑150 (MQ=255) aTTTCGCAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCaa < 1:1555215/150‑1 (MQ=255) tttCGCAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAAc < 1:1534796/150‑1 (MQ=255) tCGCAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGa < 1:1388635/150‑1 (MQ=255) cAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGGCGGGccaggat > 1:1674319/1‑121 (MQ=255) cAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGGCGGGccaggat < 2:1674319/126‑6 (MQ=255) aGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTAGGATGGCCAACGATCTg > 1:1696228/1‑150 (MQ=255) gTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGa < 1:1082031/150‑1 (MQ=255) ctcGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTc < 1:1953404/150‑1 (MQ=255) gACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCa > 2:1427557/1‑149 (MQ=255) gACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCa < 1:1427557/149‑1 (MQ=255) aCGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTAt < 2:1459240/113‑1 (MQ=255) aCGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTAt > 1:1459240/1‑113 (MQ=255) gCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGcc < 1:1416058/150‑1 (MQ=255) tGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAAc > 1:2364239/1‑150 (MQ=255) tGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAAc < 2:49329/150‑1 (MQ=255) gacgcgaTCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGGCGGGccagga > 1:1385444/1‑99 (MQ=255) gacgcgaTCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGGCGGGccagga < 2:1385444/103‑5 (MQ=255) gacgcgaTCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACCAGTGTTCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGt < 1:635618/150‑1 (MQ=255) acgcgaTCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTg < 2:257767/150‑1 (MQ=255) aTCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGgccgc > 1:1193735/1‑150 (MQ=255) tGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCCCGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGaa < 1:511114/150‑1 (MQ=255) tGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAAAGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGaa > 2:1469676/1‑150 (MQ=255) aaGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATc > 1:312324/1‑114 (MQ=255) aaGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATc < 2:312324/114‑1 (MQ=255) ggggATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACggg > 2:114677/1‑150 (MQ=255) gggATGGGCACCAGCTGCTGGGTGTATTTACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCTTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGc < 2:858473/150‑1 (MQ=255) gggATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGc > 2:332897/1‑150 (MQ=255) ggCACCAGCTGCTGGGTGTATTCGCCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATcc < 1:775155/150‑1 (MQ=255) ggCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTCAAATCCTGGCCCGCCGGGCCGATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGCATcc > 1:2028703/1‑150 (MQ=255) gCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCg > 1:986249/1‑150 (MQ=255) gCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCg < 2:1325931/150‑1 (MQ=255) cACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCgt < 2:1588803/150‑1 (MQ=255) aCCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCgtg > 1:1126339/1‑150 (MQ=255) aCCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCgtg > 1:1788682/1‑150 (MQ=255) cAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTa > 1:107073/1‑150 (MQ=255) gctgGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCggg < 2:107073/150‑1 (MQ=255) ggTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGAc > 1:1199743/1‑150 (MQ=255) tgtATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACaa < 1:1272264/150‑1 (MQ=255) agtCACCCGCGCACGGGTTGCCCGCGAGTATTTCCGTTATCTACTGTCTGTCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACAGGCGGATCCGTGTACCGGGCGACAAGTc < 2:397459/148‑1 (MQ=255) ttCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCg > 1:756525/1‑150 (MQ=255) gcaaCCCGTGCGCGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCg > 1:1285845/4‑150 (MQ=255) tCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGa < 1:958477/150‑1 (MQ=255) aCCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGAtt > 2:1372004/1‑150 (MQ=255) aCCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGAtt > 2:1491166/1‑150 (MQ=255) cccGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGAttt < 1:332897/150‑1 (MQ=255) ccGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCAGCCGGAGCGATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTc > 1:1268118/1‑150 (MQ=255) gtgcgcGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTccc > 1:1386463/6‑150 (MQ=255) gcACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCAt < 1:1469676/150‑1 (MQ=255) gcACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCAt > 2:2128542/1‑150 (MQ=255) gcACCGGGTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGTCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCAt < 1:1694263/150‑1 (MQ=255) cACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATc < 2:756525/150‑1 (MQ=255) aCGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCg > 2:535154/1‑150 (MQ=255) aCGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCCGGCAACGAGTCGATTTCCCATCg > 2:559136/1‑150 (MQ=255) aCGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGCGGAAGCTATGAACGACAACGATCTGAATTTGCAGGCCCAACCGGCGGGCTGCCTGATCGGTCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATcc > 2:273523/1‑149 (MQ=255) ggTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGATATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTc < 2:365112/150‑1 (MQ=255) gTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCg > 1:405111/1‑150 (MQ=255) cgcgAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCgt > 1:728296/1‑111 (MQ=255) cgcgAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCgt < 2:728296/111‑1 (MQ=255) cgcgAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACCCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGACCGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATg < 2:772863/150‑1 (MQ=255) gcgAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATgc > 1:2151412/1‑150 (MQ=255) gAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTccc < 2:563041/133‑1 (MQ=255) gAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTccc > 1:563041/1‑133 (MQ=255) gCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGc > 1:408657/1‑115 (MQ=255) gCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGc < 2:408657/115‑1 (MQ=255) aTTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTAGATCATgctcggct > 1:134251/1‑150 (MQ=255) aGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCgg < 2:1492121/106‑1 (MQ=255) aGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCgg > 1:1492121/1‑106 (MQ=255) aGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTg > 2:842002/1‑150 (MQ=255) gTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTgg < 1:1745745/150‑1 (MQ=255) gTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTgg > 1:522456/1‑150 (MQ=255) tAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGc > 2:27918/1‑150 (MQ=255) tAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGc > 1:1436144/1‑150 (MQ=255) tAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGc > 1:828253/1‑150 (MQ=255) tAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGc > 1:119316/1‑150 (MQ=255) tAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGc > 2:50117/1‑150 (MQ=255) aaaaTCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGcc < 2:134251/150‑1 (MQ=255) acataggCCCGGCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGCCGaa > 2:1898001/6‑150 (MQ=255) aTCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTTAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGCCGaa < 2:463012/150‑1 (MQ=255) tCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGCCGAAg < 1:27918/150‑1 (MQ=255) tCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGCCGAAg < 1:1491166/150‑1 (MQ=255) tCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGCCGAAg < 1:842002/150‑1 (MQ=255) tCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGCCGAAg < 2:1199743/150‑1 (MQ=255) tGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCATGCCCAACCGGGTGGCCGCCTGAACGGGCGGATACGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGGTCGCTGGCCGAAGGta > 2:1164867/1‑150 (MQ=255) tGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGCCGAAGGta < 1:2128542/150‑1 (MQ=255) tGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGCCGAAGGta > 1:1618477/1‑150 (MQ=255) cccGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGCCGAAGGtacta > 2:1457079/1‑150 (MQ=255) ccgccgGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGCCGAAGGtactac < 2:1696228/150‑1 (MQ=255) cgccgGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGCCGAAGGTACTAcc < 2:1436144/150‑1 (MQ=255) cgccgGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGCCGAAGGTACTAcc < 2:828253/150‑1 (MQ=255) | GTCCTGCGCACGCTTGATACATTTCGCAGTGATCTCGACGCCCTGCGCGACGCGATCGCTGAAGGGGATGGGCACCAGCTGCTGGGTGTATTCACCCGCGCACGGGTTGCCCGCGAGCATTTCAGTAAAATCCTGGCCCGCCGGGCCTATGTGGACGCTATGAACGCCAACGATCTGATTTTCCAGGCCCAACCGGGTGGCCGCCTGAACGGGCGGATCCGTGTACCGGGCGACAAGTCGATTTCCCATCGCTCGATCATGCTCGGCTCGCTGGCCGAAGGTACTACCGA > NC_002947/1977139‑1977428 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |