BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_002947	1,978,751	C→G	6.5%	F45L (TTC→TTG)	cmk →	cytidylate kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	1,978,751	0	C	G	6.5%	371.0 / 12.3	119	F45L (TTC→TTG)	cmk	cytidylate kinase
Reads supporting (aligned to +/- strand): ref base C (57/53); new base G (2/6); total (59/60)
Fisher's exact test for biased strand distribution p-value = 2.72e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01

Only 100 of 119 total aligned reads displayed.

AAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGTGAGGACGTCAGCAACGTCATC  >  NC_002947/1978604‑1978895

aagaGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCaa                                                                                                                                                <  1:1474921/150‑1 (MQ=255)

 agagGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAAt                                                                                                                                               <  2:894329/150‑1 (MQ=255)

  gagGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATg                                                                                                                                              <  2:1150679/150‑1 (MQ=255)

     ggCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGNTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCa                                                                                                                                           >  2:467376/1‑150 (MQ=255)

     ggCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTGAATGCCa                                                                                                                                           <  1:1943585/150‑1 (MQ=255)

     ggCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCa                                                                                                                                           <  2:101006/150‑1 (MQ=255)

     ggCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCa                                                                                                                                           >  1:1473919/1‑150 (MQ=255)

     ggCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCNGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCNa                                                                                                                                           <  1:467376/150‑1 (MQ=255)

        aaGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGccacca                                                                                                                                        >  1:713017/1‑150 (MQ=255)

           tCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTGAATGCCAGCaagc                                                                                                                                     <  2:1997328/150‑3 (MQ=255)

             gTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTGAATGCCAGCaagcga                                                                                                                                   <  1:905569/150‑5 (MQ=255)

               gAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACgg                                                                                                                                 >  2:1391941/1‑150 (MQ=255)

                     aaTGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGa                                                                                                                           >  2:471534/1‑150 (MQ=255)

                     aaTGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGa                                                                                                                           >  2:680611/1‑150 (MQ=255)

                     aaTGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACCGCGTCgg                                                                                                                           >  2:2127268/1‑149 (MQ=255)

                      aTGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGAc                                                                                                                          <  1:1824387/150‑1 (MQ=255)

                         gCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTg                                                                                                                       >  1:1284441/1‑150 (MQ=255)

                          cACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGa                                                                                                                      >  2:1301063/1‑150 (MQ=255)

                           aCCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGa                                                                                                                      >  1:2308390/1‑149 (MQ=255)

                           aCCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGa                                                                                                                      <  2:2308390/149‑1 (MQ=255)

                           aCCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGAc                                                                                                                     >  1:1278876/1‑150 (MQ=255)

                                  aTCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGaa                                                                                                              <  2:1278876/150‑1 (MQ=255)

                                   tCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCaa                                                                                                                  >  1:2049371/1‑145 (MQ=255)

                                   tCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCaa                                                                                                                  <  2:2049371/145‑1 (MQ=255)

                                         tCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAgctgc                                                                                                       <  1:1345174/150‑1 (MQ=255)

                                         tCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAgctgc                                                                                                       <  1:230939/150‑1 (MQ=255)

                                          cGACGGACCAAGCGGCTCGGGCAAGGGGATGGTCGCCGCGCTGAGTGCCAGAGAGCTGGGCTGGAAGCTGCTGTACTCCGGCGCCTTGTATCGCTTTCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACAAACGAAGCgctgct                                                                                                      <  2:1332565/150‑1 (MQ=255)

                                          cGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAgctgct                                                                                                      <  1:471534/150‑1 (MQ=255)

                                                  cAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGc                                                                                              <  2:1284441/150‑1 (MQ=255)

                                                  cAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCGGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGc                                                                                              >  1:1032934/1‑150 (MQ=255)

                                                   aaGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCa                                                                                                                                           >  2:874778/1‑104 (MQ=255)

                                                   aaGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCa                                                                                                                                           <  1:874778/104‑1 (MQ=255)

                                                        gCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTgccg                                                                                        >  2:1859673/1‑150 (MQ=255)

                                                          tCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTgccgcc                                                                                      >  1:690051/1‑150 (MQ=255)

                                                               cAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCt                                                                                 >  1:1675530/1‑150 (MQ=255)

                                                                aaGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTg                                                                                >  1:119907/1‑150 (MQ=255)

                                                                  gggCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATATGGa                                                                              <  1:509207/150‑1 (MQ=255)

                                                                   ggCACGGTCGCCGGGCTGATTGCCTGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGCCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGGCGCCCATCTGGag                                                                             >  2:1849440/1‑149 (MQ=255)

                                                                   ggCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGAt                                                                             <  2:85533/150‑1 (MQ=255)

                                                                        ggTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCACCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCAGCGGGATGTGCa                                                                        <  2:713017/150‑1 (MQ=255)

                                                                         gTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAg                                                                       <  2:690051/150‑1 (MQ=255)

                                                                          tCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGt                                                                      <  2:1507003/150‑1 (MQ=255)

                                                                             ccGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAgctgc                                                                                                       <  1:1333215/114‑1 (MQ=255)

                                                                             ccGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAgctgc                                                                                                       >  2:1333215/1‑114 (MQ=255)

                                                                              cGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAg                                                                       >  1:1406031/1‑145 (MQ=255)

                                                                              cGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGACATCGGGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCAt                                                                  >  1:635821/1‑150 (MQ=255)

                                                                               gggCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATc                                                                 <  1:2130121/150‑1 (MQ=255)

                                                                                  cTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCt                                                              >  1:1137802/1‑150 (MQ=255)

                                                                                     aTTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGGGACCGCGGCGTCGACCTGACCAACGAAGCGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGcc                                                           >  1:902459/1‑150 (MQ=255)

                                                                                      ttGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAAc                                                                                                                 >  2:1162245/1‑95 (MQ=255)

                                                                                       tGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGa                                                         <  1:1713535/150‑1 (MQ=255)

                                                                                       tGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGa                                                         <  2:1032934/150‑1 (MQ=255)

                                                                                          ccGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAAc                                                                                                                 >  2:1120551/1‑91 (MQ=255)

                                                                                          ccGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAAc                                                                                                                 <  1:1120551/91‑1 (MQ=255)

                                                                                          ccGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATc                                                                 <  1:1150347/139‑1 (MQ=255)

                                                                                          ccGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGcc                                                      >  2:1727059/1‑150 (MQ=255)

                                                                                                gctgggctggAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTaa                                                <  2:1675530/150‑1 (MQ=255)

                                                                                                    ggctggAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTa                                            <  1:1745521/150‑1 (MQ=255)

                                                                                                      ctggAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGa                                                                                                    <  1:1346104/92‑1 (MQ=255)

                                                                                                      ctggAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGa                                                                                                    >  2:1346104/1‑92 (MQ=255)

                                                                                                         gAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGcc                                                      >  1:1379644/1‑135 (MQ=255)

                                                                                                         gAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGcc                                                      <  2:1379644/135‑1 (MQ=255)

                                                                                                         gAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTacaaca                                       >  1:339634/1‑150 (MQ=255)

                                                                                                         gAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTacaaca                                       <  1:1727059/150‑1 (MQ=255)

                                                                                                          aaGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAg                                      <  2:1137802/150‑1 (MQ=255)

                                                                                                              tgctgGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGatca                                  >  2:1418961/1‑150 (MQ=255)

                                                                                                                   gACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCtt                             >  1:422916/1‑150 (MQ=255)

                                                                                                                     cTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGa                           <  2:1473919/150‑1 (MQ=255)

                                                                                                                     cTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGa                           <  2:902459/150‑1 (MQ=255)

                                                                                                                     cTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGa                           >  1:2077274/1‑150 (MQ=255)

                                                                                                                         ggCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGt                       <  2:422916/150‑1 (MQ=255)

                                                                                                                         ggCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGt                       >  2:1209957/1‑150 (MQ=255)

                                                                                                                            gcgcTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGTGAg                    <  1:1209957/150‑1 (MQ=255)

                                                                                                                               ttGTATCGCTTGCTGGCATTACCCGCCCGAACTCAAATCGTCGACCCAACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGTGAGGAc                 <  2:1832789/149‑1 (MQ=255)

                                                                                                                                tGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGaa                                                                                                              <  1:999658/56‑1 (MQ=255)

                                                                                                                                tGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGTGAGGACg                >  1:2038434/1‑150 (MQ=255)

                                                                                                                                 gTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGTTTGTTAAGCTACAACAGATCATCCTTGAGGGTGAGGACga               >  1:1832789/1‑149 (MQ=255)

                                                                                                                                   aTCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGTGAGGACGTCa             >  1:754959/1‑150 (MQ=255)

                                                                                                                                   aTCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGTGAGGACGTCa             <  1:680611/150‑1 (MQ=255)

                                                                                                                                    tCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGCCACGACAAACGCAGAGTTGCTGACCATGTTTGCCGCCCATCTGTATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGTGAGGACGTCAg            <  2:2077274/150‑1 (MQ=255)

                                                                                                                                      gCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACTAACGAAGAGCTGCTGACCAAGCTTgccgc                                                                                       <  1:2244757/73‑1 (MQ=255)

                                                                                                                                      gCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGTGAGGACGTc              <  2:153536/146‑1 (MQ=255)

                                                                                                                                      gCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGTGAGGACGTc              >  1:153536/1‑146 (MQ=255)

                                                                                                                                       cTTGCTGGCATTCAATGCCAGCAACCACGGCGTCAACCTGACCAACGAAGAGCTGCTGATCAAGCTTGCCGCCCATCGGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGTGAGGACGTCa             <  1:2166298/146‑1 (MQ=255)

                                                                                                                                       cTTGCTGGCATTCAATGCCAGCAACCACGGCGTCAACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGTGAGGACGTCa             >  2:2166298/1‑146 (MQ=255)

                                                                                                                                        ttGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGAAAGAGCGTCAGCAAc        >  2:672855/1‑150 (MQ=255)

                                                                                                                                          gCTGGCATTGAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGTGAGGACGTCAGCAACGt      >  2:1410684/1‑150 (MQ=255)

                                                                                                                                           cTGGCATTGAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCt                                             <  2:792315/110‑1 (MQ=255)

                                                                                                                                            tGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGc                                                            <  1:2074154/94‑1 (MQ=255)

                                                                                                                                            tGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGc                                                            >  2:2074154/1‑94 (MQ=255)

                                                                                                                                            tGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCGCGGTAAGCTACAACAGATCATCCTTGAGGGTGAGGACGTCAGCAACGTCa    >  2:65732/1‑150 (MQ=255)

                                                                                                                                            tGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGTGAGGACGTCAGCAACGTCa    >  2:564357/1‑150 (MQ=255)

                                                                                                                                            tGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGTGAGGACGTCAGCAACGTCa    >  2:1065701/1‑150 (MQ=255)

                                                                                                                                             ggCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAATAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGTGAGGACGTCAGCAACGTCAt   >  1:1824874/1‑150 (MQ=255)

                                                                                                                                             ggCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGTGAGGACGTCAGCAACGTCAt   >  1:1293118/1‑150 (MQ=255)

                                                                                                                                              gCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGa                                                         >  1:108806/1‑95 (MQ=255)

                                                                                                                                              gCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGa                                                         <  2:108806/95‑1 (MQ=255)

                                                                                                                                              gCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGTGAGGACGTCa             >  1:639974/1‑139 (MQ=255)

                                                                                                                                              gCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGTGAGGACGTCAGCAACGTCATc  >  1:1343315/1‑150 (MQ=255)

                                                                                                                                                  tCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGat                                    >  1:1014308/1‑112 (MQ=255)

AAGAGGGCAAGTCGTGAATTCAATGGCACCGGTTATCACCATCGACGGACCAAGCGGCTCGGGCAAGGGCACGGTCGCCGGGCTGATTGCCCGCGAGCTGGGCTGGAAGCTGCTGGACTCCGGCGCGCTGTATCGCTTGCTGGCATTCAATGCCAGCAACCACGGCGTCGACCTGACCAACGAAGAGCTGCTGACCAAGCTTGCCGCCCATCTGGATGTGCAGTTCATCGCTGCCGAGCCCGGTAAGCTACAACAGATCATCCTTGAGGGTGAGGACGTCAGCAACGTCATC  >  NC_002947/1978604‑1978895

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`