| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 197,632 | T→C | 11.7% | T1046T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 197,632 | 0 | T | C | 11.7% | 326.4 / 28.7 | 137 | T1046T (ACT→ACC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (61/60); new base C (6/10); total (67/70) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.28e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.24e-01 | |||||||||||
Only 100 of 139 total aligned reads displayed.
CTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGT > NC_002947/197485‑197778 | cTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACCGt > 2:1734307/1‑150 (MQ=25) tACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACCGTc > 2:1402127/1‑150 (MQ=25) acacCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACCGTCa < 1:719841/150‑1 (MQ=25) acCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGc > 2:1688501/1‑150 (MQ=255) acCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGc > 1:1503837/1‑150 (MQ=255) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTc > 2:184689/1‑145 (MQ=255) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTc < 1:184689/145‑1 (MQ=40) cGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGt > 2:461535/1‑150 (MQ=255) tGATCATGAGCAATACTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCCGCGACGCTTTCCCGACCCCGGCGAATCACATCTA‑CAACAACCTTTCGACCGTCAGCGTCa < 2:1233952/150‑1 (MQ=11) cTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATc > 1:108489/1‑150 (MQ=39) cTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCGGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACCGTCAGCGTCACCATc < 2:1913870/150‑1 (MQ=14) cTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCGGTACAACGGCCAAACCATTACCGTTGAAGCCGGCAAGCCCCAGGGCAGCGCCGATTTCCAGACCCCGGCGAAGGCCGTCTA‑CACCAACGGTTCGACTGGCAGCGTCACCacc > 2:277823/1‑148 (MQ=11) aTCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACCGTCAGCGTCACCATCGAGaa < 2:689917/148‑1 (MQ=17) tGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCcac > 2:2193304/1‑150 (MQ=38) ccAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTGCCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAgg > 1:207976/1‑150 (MQ=11) ccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATc > 2:1069655/1‑136 (MQ=40) ccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATc < 1:1069655/136‑1 (MQ=40) ccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAgg < 1:461535/150‑1 (MQ=38) ccAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAgg < 2:107761/150‑1 (MQ=17) cAGACGCCGGTGACCGTGACCCTGTCGAGCGGGCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGc > 1:1270035/1‑150 (MQ=11) cAGACGCCGGTGACCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGc > 1:1091097/1‑150 (MQ=11) aGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCg > 2:2347518/1‑150 (MQ=38) gACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCgg < 1:1219841/150‑1 (MQ=17) cGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAtt > 1:2397606/1‑150 (MQ=38) cGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAtt < 1:733975/150‑1 (MQ=17) ggTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACCGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAAttt > 1:1821525/1‑150 (MQ=17) gTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTc < 2:615164/150‑1 (MQ=37) gTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCCTGGAAGTCGAGAACGCCACAGGCGGTAATTTc < 1:1871152/150‑1 (MQ=11) aaCCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 2:130969/150‑1 (MQ=35) aaCCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 1:1688501/150‑1 (MQ=35) aCCGTGACCCTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 1:7164/150‑1 (MQ=255) aCCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAg < 2:1364848/150‑1 (MQ=35) gTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCaa > 2:1896579/1‑150 (MQ=32) tGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc < 1:1896579/150‑1 (MQ=32) tGACCCTGACCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAAc < 1:102547/150‑1 (MQ=11) cccTGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa < 2:1091097/150‑1 (MQ=9) ccTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGCGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCAGCCACAACGCCACAGGCGGTAATTTCGAGCAACTGAc > 2:2122988/1‑150 (MQ=255) cTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcc > 2:435792/1‑150 (MQ=32) tGTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CCACAACGGTTCGACTGTCAGCGTCACCATCGAGAACCCCACAGACGGCAATTTGGAGGTACTGaacg > 2:2201382/1‑147 (MQ=11) gTCCAACGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcccc < 2:819476/150‑1 (MQ=12) gTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGAcccc < 2:1503837/150‑1 (MQ=32) cAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGaa < 1:435792/150‑1 (MQ=32) aCGGCCAAACGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAcc > 1:1360970/1‑150 (MQ=255) aCGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGCCCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAccc < 1:2203694/150‑1 (MQ=17) ccAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGa < 2:121815/137‑1 (MQ=33) ccAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAc < 1:1906895/150‑1 (MQ=35) aaaCGATTACCGTTGAAGCCGGCAAAACCCAGGGCCGCGGCGACTTCCAGACCCGGCCGAATGAC‑TGTAGCAATAACGGTTCGCCTGTTAACTAAACAAAAGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAccc > 2:1805427/1‑148 (MQ=2) aaaCGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAccc < 1:848366/145‑1 (MQ=255) aaaCGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAccc > 2:848366/1‑145 (MQ=255) aaaCGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAccc > 2:2202902/1‑148 (MQ=255) aaCGATTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa > 1:1803545/1‑126 (MQ=255) acgaTTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCg < 1:2139390/147‑1 (MQ=255) cgaTTACCGTTGAAGCCGGCAAAACCCAGGGCCGCGTCGACGGCCAGACCCCGGCGAATGACGTCTA‑CATAGTGCGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCgg < 1:1141061/148‑1 (MQ=11) gaTTACCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCgg > 2:134176/2‑114 (MQ=255) aTTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCt > 2:351509/1‑150 (MQ=38) ttACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTc > 2:1194617/1‑150 (MQ=38) tACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCa > 1:250791/1‑150 (MQ=39) aCCGTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTGCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCCACTGTAAGCGTCAGCATCGAGAACGCCACAGGCGGTAATTCCGAGCAACTGACCCCGAACCCGACCCCGGCTCAg > 2:78154/1‑150 (MQ=11) cGTTGGAGCGGGCAAAAGCCAGGGCAGCGGGGACTTCCAGACACCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGAc > 2:1297813/1‑150 (MQ=11) gTTGAAGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCg < 2:40246/106‑1 (MQ=9) aaGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGa < 1:2202902/150‑1 (MQ=12) aGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAcc < 2:850607/133‑2 (MQ=19) aGCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGAcc > 1:850607/1‑132 (MQ=16) gCCGGCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATc < 1:360140/150‑1 (MQ=255) ggCAAAACCCAGGGCAGCGTCGACTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCTCAGACCACGATCaac < 1:1337153/150‑3 (MQ=255) cccAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCgg > 2:1560459/1‑150 (MQ=255) cAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTc < 1:351509/150‑1 (MQ=255) cAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTc < 1:1194617/150‑1 (MQ=255) cAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTc < 1:2347518/150‑1 (MQ=39) gggCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGATCAGACCACGATCACCGACTCGGTCGa > 2:1443532/1‑150 (MQ=255) gTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa > 1:1417572/1‑89 (MQ=35) gTCGATTTCCAGACCCCGGCCAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 1:1644180/89‑1 (MQ=17) tCGATTTCCAGACCCCGGCGAATGACGTCGA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCacta > 2:32217/1‑150 (MQ=255) tttCCAGACCCCGGCGAATGACGTCTA‑CAACAACTGTTCGACTGTCAGCGTCACCAACGAGAACGCAACAGGCGGTAATTTCGATCACCTGACCCCGAACCCGACGCCGGGTCAGAGCACGATCACCGACCCTTTCGACACCACCACTGc > 2:611495/1‑150 (MQ=14) tttCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGc < 1:1560459/150‑1 (MQ=255) ttCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAAc > 2:2317816/1‑99 (MQ=35) aGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGa < 1:368971/99‑1 (MQ=39) aGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGa > 2:368971/1‑99 (MQ=39) cccGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGAc > 1:1572329/1‑150 (MQ=255) ggCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGc < 1:2193304/150‑1 (MQ=255) gTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACTATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGc < 2:1453667/150‑1 (MQ=255) gTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGc > 1:592198/1‑150 (MQ=255) gTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGc < 2:592198/150‑1 (MQ=255) tCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGAcc > 2:472136/1‑131 (MQ=40) caacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGa < 1:599607/54‑1 (MQ=38) caacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCa > 2:1024430/1‑89 (MQ=39) caacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGa > 1:300721/1‑150 (MQ=255) caacGGTTCGACTGTCAGCGTCACCATCGAGAACGCAACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCa < 1:1024430/89‑1 (MQ=255) aacGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGaa < 2:1627657/150‑1 (MQ=255) ggTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCTGAACCCGACCCCGGCTCAGACCACGAt < 2:42408/89‑1 (MQ=255) ggTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCTGAACCCGACCCCGGCTCAGACCACGAt > 1:42408/1‑89 (MQ=255) gTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAg > 2:2099508/1‑147 (MQ=255) ttCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCgg > 1:2066124/1‑98 (MQ=255) ttCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCgg < 2:2066124/98‑1 (MQ=255) ttCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCt > 2:1096776/1‑76 (MQ=21) ttCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACCCCGGCt < 1:1096776/76‑1 (MQ=19) gACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGt < 1:32217/150‑1 (MQ=255) gACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGt > 2:2323675/1‑150 (MQ=255) gACTGTCAGCGTAACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGt < 1:2122988/150‑1 (MQ=255) tGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGAc < 2:1717450/117‑1 (MQ=255) | CTACACCGTGATCCTGAGCAATCCTGCCCAGACGCCGGTAACCGTGACCCTGTCCAACGGCCAAACCATTACCGTTGAAGCCGGCAAGACCCAGGGCAGCGTCGATTTCCAGACCCCGGCGAATGACGTCTA‑CAACAACGGTTCGACTGTCAGCGTCACCATCGAGAACGCCACAGGCGGTAATTTCGAGCAACTGACCCCGAACCCGACGCCGGCTCAGACCACGATCACCGACTCGGTCGACACCACTACTGCGACCCTGACCGCCTCGCCAAGCGTGACCGAAGGCGGCGT > NC_002947/197485‑197778 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |