| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 198,367 | G→C | 5.6% | V1291V (GTG→GTC) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 198,367 | 0 | G | C | 5.6% | 275.0 / 6.9 | 91 | V1291V (GTG→GTC) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base G (46/39); new base C (2/3); total (48/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.08e-01 | |||||||||||
CTTGATGCAGGCTCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTA > NC_002947/198218‑198514 | cTTGATGCAGGCTCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTg > 1:965868/1‑150 (MQ=255) gCTCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCg > 2:2379213/1‑150 (MQ=255) gCTCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCg < 2:535879/150‑1 (MQ=255) gCTCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTCACCGAAgggg < 2:1266613/150‑3 (MQ=255) tCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGt < 1:2379213/150‑1 (MQ=255) tCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGt > 2:1255241/1‑150 (MQ=255) tCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGt < 2:1699123/150‑1 (MQ=255) tCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTCACCGAAggggtg < 1:768551/150‑5 (MQ=255) cATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTga < 1:1464564/150‑1 (MQ=255) cATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTga < 2:1077164/150‑1 (MQ=255) cACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGAt > 2:1464200/1‑150 (MQ=255) gCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCAc > 1:735607/1‑150 (MQ=255) gCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCAc > 2:1332826/1‑150 (MQ=255) tCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACAGCCACCCCTTCGGTGAGCGAAGGCGGTGAGATAACCt > 1:522498/1‑150 (MQ=255) aGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTac < 1:1332826/150‑1 (MQ=255) gtgtTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTaca < 2:1442566/150‑1 (MQ=255) tACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGNTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGGGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGGTAGATCACCTACACCAt > 1:1009907/1‑150 (MQ=255) cGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCAc > 1:258212/1‑150 (MQ=255) cGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCAc < 1:1928816/150‑1 (MQ=255) gACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCAcc < 1:1882760/150‑1 (MQ=255) aCGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCAccc < 1:1255241/150‑1 (MQ=255) gCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTg > 1:1468486/1‑150 (MQ=255) ttCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACcaaca > 2:375755/1‑150 (MQ=255) gCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCTCCGCTTGCTTCACCCTGACCAACAAAGACGGt < 1:1270069/150‑1 (MQ=25) gCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGt < 1:1157414/150‑1 (MQ=255) ccACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTc > 1:1509467/1‑150 (MQ=255) aCCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTga < 1:611127/110‑1 (MQ=255) aCCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTga > 2:611127/1‑110 (MQ=255) aCCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATc > 2:865593/1‑126 (MQ=255) aCCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATc < 1:865593/126‑1 (MQ=255) cTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGcc > 1:1818482/1‑150 (MQ=255) cTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTAACCCTACCTACACCATCACCCTGACCAACAAAGACGGTCTGcc > 1:1834308/1‑150 (MQ=25) ttCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAgg < 2:565743/101‑1 (MQ=255) ttCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAgg > 1:565743/1‑101 (MQ=255) gCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATaa > 2:2250710/1‑150 (MQ=255) cTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAAc < 1:375755/150‑1 (MQ=255) tGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAAcc > 2:416619/1‑150 (MQ=255) ggCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCa > 1:2256222/1‑150 (MQ=255) gCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCAc > 1:437404/1‑150 (MQ=255) cTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATc < 2:1001110/97‑1 (MQ=255) cTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATc > 1:1001110/1‑97 (MQ=255) ttGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCg > 1:574151/1‑150 (MQ=255) ccGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGAAGCTGTAc > 2:293542/1‑150 (MQ=255) ccGGCTACCGTTGAGATCTCATACACTATCAGTGAAGTGGTGGCCTAACGGACTGCCACCCCTTCGGTGACCGAAGCCGGTGAGATCACGTACACCATCACCCTGAGAAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTAc < 1:293542/150‑1 (MQ=17) tACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCaa > 2:661522/1‑150 (MQ=255) gTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTg > 2:780775/1‑150 (MQ=255) ttGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGa < 1:235069/150‑1 (MQ=255) gagaTCTCGAAAACTATAAGTGAACTAATGGCAAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGAcc > 2:398815/1‑150 (MQ=14) aTCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAgg > 1:274755/1‑62 (MQ=255) aTCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAgg < 2:274755/62‑1 (MQ=255) aTCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGAt > 2:281267/1‑150 (MQ=255) aTCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGAt < 1:1464200/150‑1 (MQ=255) aTCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGAt > 1:1145424/1‑150 (MQ=255) aTCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGAt < 1:1016049/150‑1 (MQ=255) aTCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAAATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGAt > 1:876411/1‑150 (MQ=255) tctcGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATg < 1:2250710/150‑1 (MQ=255) ttccgACACTATCAGTGAAGTGGTGGACAAACTGACTGCCACCCCTTCGGTGACCGCAGGCGGTACGATCCCCTATACCATAGCCCTGACCAACAAAGACTGTCTGCCGATGAATAACCCCTCGGAGCTGTACTTCAAGCTGACCGATgg < 2:522498/146‑1 (MQ=14) ctcGGACACTATCGGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATgg < 2:1933355/150‑1 (MQ=255) ttggACACAAGCAGTGAACTGGTGGCCAACGTGACTGACAACCGTTGCGCAACCGAAGGCAGTGAGATTACCTACACCATCCCCCTGACCAACAACGTCGATGTGACGATCAATACCCACTCGGAGCTGTACTTCAAGCTGACCGATGGc < 2:1009907/148‑1 (MQ=2) tcGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGc > 1:1675873/1‑106 (MQ=255) tcGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGc < 2:1675873/106‑1 (MQ=255) gACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCact > 1:2062103/1‑150 (MQ=255) cacTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCactac > 1:1735356/1‑150 (MQ=255) acTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCactact > 1:2128372/1‑150 (MQ=255) acTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCactact > 2:453252/1‑150 (MQ=255) tATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCacta > 1:1937383/1‑146 (MQ=255) tATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCacta < 2:1937383/146‑1 (MQ=255) tATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGAACAATAACCACTCGGAGCTGTACTTCAATCTTACCGATGGCACTACTgg > 2:267009/1‑149 (MQ=255) tCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATg < 1:260356/138‑1 (MQ=39) tCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATg > 2:260356/1‑138 (MQ=39) gTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGtcgtcg > 2:1967968/1‑150 (MQ=40) tGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTcgtcgt < 1:416619/150‑1 (MQ=39) tGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTcgtcgt < 2:1162127/150‑1 (MQ=39) ggCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCaa < 2:574151/150‑1 (MQ=39) ggCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCaa < 1:780775/150‑1 (MQ=38) gCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAAc < 2:735607/150‑1 (MQ=38) ccAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACa < 2:2128372/150‑1 (MQ=39) ctgactgCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAAc > 2:327002/1‑144 (MQ=35) ctgactgCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAAc < 1:327002/144‑1 (MQ=35) tgcctgCCACACCTACGGTGACCGAAGGCGGTGAAATCACCCACACCCTCACCCTGACAAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTCTACTTCAAAATGACCCATGGCACTACCGTCGAGGTGGCAGCCAACAGcacca > 2:1001705/4‑150 (MQ=11) gactgCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGcaccac > 1:1278927/1‑150 (MQ=35) tgCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCgg > 1:2022954/1‑150 (MQ=38) ccACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACa < 2:566925/138‑1 (MQ=37) ccACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACa > 1:566925/1‑138 (MQ=37) accgccTTCGGTCACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTc > 1:1447559/5‑150 (MQ=255) accgccTTCGGTCACCGAAGG‑GGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACa > 1:1537523/5‑136 (MQ=255) accgccTTCGGTCACCGAAGG‑GGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACa < 2:1537523/132‑1 (MQ=255) cccTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGc < 2:965868/150‑1 (MQ=35) ccTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGcc > 2:1228154/1‑150 (MQ=34) tCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACt < 1:1967968/150‑1 (MQ=35) ggTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGt > 2:898496/1‑150 (MQ=35) gTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTa < 1:1766939/150‑1 (MQ=35) | CTTGATGCAGGCTCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCAGCCAACAGCACCACCGGTTCGGCCACTGTA > NC_002947/198218‑198514 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |