| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 198,777 | T→A | 7.5% | L1428Q (CTG→CAG) | PP_0168 → | putative surface adhesion protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 198,777 | 0 | T | A | 7.5% | 329.3 / 14.6 | 107 | L1428Q (CTG→CAG) | PP_0168 | putative surface adhesion protein |
| Reads supporting (aligned to +/- strand): ref base T (58/41); new base A (5/3); total (63/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.59e-01 | |||||||||||
Only 100 of 114 total aligned reads displayed.
GTCAGCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTG > NC_002947/198629‑198926 | gTCAGCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTg < 2:1490862/150‑1 (MQ=255) tCAGCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTgg < 2:1543174/150‑1 (MQ=255) cAGCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGt < 2:2016840/150‑1 (MQ=255) ccGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCAGGTCGTGa < 2:2354436/150‑1 (MQ=255) gAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGAcc > 1:2316458/1‑150 (MQ=255) tCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGa < 2:496300/150‑1 (MQ=255) aaCCGACGAGCCAGGTACGCCAGGCAACGAAGGCTATATCGTCAAGGTCACCATCACGGCCGACCAAACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACCCCGCCCTGGCTCACGACCTGGTCGTGTCCCTGAg < 1:1957001/149‑1 (MQ=255) aCCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATGTCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTCGCCGAGAACGTCAACCCGACCTTCACTATGCACATCAACACCGACCTGGCTCACGACCTGGTCGTGACCCTGAGc > 1:570609/1‑150 (MQ=17) gaGCCAGGTACGCCAGGCAACGAAGGCGTTATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGa < 1:254522/136‑1 (MQ=255) gaGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGa > 2:254522/1‑136 (MQ=255) aGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACg < 2:627404/150‑1 (MQ=255) ccAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGt < 2:1985859/122‑1 (MQ=255) ccAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGt > 1:1985859/1‑122 (MQ=255) cAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCaa < 1:1668625/150‑1 (MQ=255) aaCGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAg < 1:852718/150‑1 (MQ=255) atatCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGaaa < 2:1575864/150‑1 (MQ=255) cGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAg < 1:1430049/150‑1 (MQ=255) cGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAg < 1:618626/150‑1 (MQ=255) gTCAAGGTCACCATCACGGCCGACCAGACTTCGGTATCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTc > 2:2117667/1‑99 (MQ=255) gTCAAGGTCACCATCACGGCCGACCAGACTTCGGTATCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTc < 1:2117667/99‑1 (MQ=255) tCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCt > 2:566932/1‑106 (MQ=255) tCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCt < 1:566932/106‑1 (MQ=255) tCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGa < 2:2119023/108‑1 (MQ=255) tCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGa > 1:2119023/1‑108 (MQ=255) tCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAg > 1:532536/1‑109 (MQ=255) tCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAg < 2:532536/109‑1 (MQ=255) tCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAgcg > 1:2273078/1‑150 (MQ=255) gtgaCCATCCCGGCCGACGAGACATCGGTAGCCGAGAACGTCACACCGACCTTCGCTGTGCACATCAACACCGCCCTGCCTCACGACCTGGTCGTGACCGTGAGCACCAACGCTCCGGACACCATCCAGGCCGGCGAAACCAGCGCACCg > 2:27113/4‑150 (MQ=17) cccACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGNGCAACAACGNTCAGGTCANCACCAAGGCCGGCGAAACCTTCGCACCg < 1:824746/148‑1 (MQ=255) cACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTa < 1:1077647/150‑1 (MQ=255) cATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTacac > 1:292336/1‑150 (MQ=255) tCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTc > 2:77922/1‑150 (MQ=255) ccGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCacgacg > 1:911211/1‑150 (MQ=255) gACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGAcgcg > 1:959479/1‑150 (MQ=255) aCCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACgcgc > 2:729828/1‑150 (MQ=255) ccAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCa > 1:1727098/1‑150 (MQ=255) cAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCAt > 1:1987990/1‑107 (MQ=255) cAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAg > 1:767670/1‑111 (MQ=255) cAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAg < 2:767670/111‑1 (MQ=255) cAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAg < 2:959479/150‑1 (MQ=255) aGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATc > 1:2348222/1‑107 (MQ=255) aGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATc < 2:2348222/107‑1 (MQ=255) ttCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCa > 1:471367/1‑101 (MQ=255) ttCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCa < 2:471367/101‑1 (MQ=255) ttCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGa > 1:1424863/1‑150 (MQ=255) tCGGTAGCTGAGAACGTCAAACCGCACTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAgcatgaa < 2:1162602/150‑7 (MQ=17) ccGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCt > 1:2315363/1‑150 (MQ=255) cGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTa > 1:1919897/1‑150 (MQ=255) agaACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCAGGTCGTGa < 2:1853739/63‑1 (MQ=255) aCGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAgg > 1:1341898/1‑150 (MQ=255) gTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAg > 1:1817823/1‑90 (MQ=255) gTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAg < 2:1817823/90‑1 (MQ=255) gTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGAt > 2:2378866/1‑150 (MQ=255) gTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGAt > 1:2069956/1‑150 (MQ=255) gTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGAt < 1:1605429/150‑1 (MQ=255) gTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGAt > 2:1605429/1‑150 (MQ=255) aaaCCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCg < 2:2273078/150‑1 (MQ=255) aaCCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCgg > 2:1575612/1‑150 (MQ=255) cGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGcc > 1:1598907/1‑150 (MQ=255) gACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCa < 2:1424863/150‑1 (MQ=255) cTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGAt > 2:491552/1‑150 (MQ=255) tCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCa < 1:2027677/150‑1 (MQ=255) gcACTGTGGACATCAACACCGGCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCGCGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCa < 2:292336/149‑1 (MQ=255) aCTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGc > 2:489849/1‑150 (MQ=255) gCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTaca > 1:1009501/1‑95 (MQ=255) gCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTaca < 2:1009501/95‑1 (MQ=255) gCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTggg > 1:2169114/1‑150 (MQ=255) acaTCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCa > 2:2193580/1‑60 (MQ=255) acaTCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCa < 1:2193580/60‑1 (MQ=255) acaTCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGTGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCa > 2:1081138/1‑150 (MQ=255) aTCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATc > 2:1917161/1‑150 (MQ=255) aTCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATc > 1:2323374/1‑150 (MQ=255) cAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCGGCCTGGGCATCaa > 1:2052231/1‑150 (MQ=255) ttgccGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACt > 2:1552916/4‑150 (MQ=255) cacCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTc > 2:1062704/1‑150 (MQ=255) acCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTcg > 1:136479/1‑150 (MQ=255) tcagggtCACGACCAGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTCGGCGGt > 2:1053535/7‑150 (MQ=255) ccTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCa < 1:343448/84‑1 (MQ=255) ccTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCa > 2:343448/1‑84 (MQ=255) cTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTCGGCGGTg < 1:77922/150‑1 (MQ=255) tCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTAGGCGATGGACGc > 2:1940791/1‑150 (MQ=255) tCACGACCAGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCa < 1:2217238/122‑1 (MQ=255) tCACGACCAGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCa > 2:2217238/1‑122 (MQ=255) aCGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCCCGACGGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGAAGTCGATCGGGATGCGGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCa > 1:2244099/1‑150 (MQ=17) aCGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGa < 2:312854/106‑1 (MQ=255) gACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAgg > 2:1747861/1‑85 (MQ=255) gACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAgg < 1:1747861/85‑1 (MQ=255) gACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTgg < 1:1237367/124‑1 (MQ=255) gACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTgg > 2:1237367/1‑124 (MQ=255) gACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACt > 2:2285530/1‑150 (MQ=255) ccTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGc < 2:791065/109‑1 (MQ=255) ccTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGc > 1:791065/1‑109 (MQ=255) cTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCACCAACGCGGCGGTGGAAGCCACTggg > 2:1161840/1‑149 (MQ=255) tGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGa < 2:1839491/85‑1 (MQ=255) tGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGa > 1:1839491/1‑85 (MQ=255) tGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCAt < 2:1222820/124‑1 (MQ=255) tGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCAt > 1:1222820/1‑124 (MQ=255) tGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGtg > 1:269286/1‑150 (MQ=255) tGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGtg < 2:2323374/150‑1 (MQ=255) tGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGtg < 1:496064/150‑1 (MQ=255) | GTCAGCACCGAGGTCACCGACGAGCCAGGTACGCCAGGCAACGAAGGCGATATCGTCAAGGTCACCATCACGGCCGACCAGACTTCGGTAGCCGAGAACGTCAAACCGACCTTCACTGTGCACATCAACACCGCCCTGGCTCACGACCTGGTCGTGACCCTGAGCAACAACGCTCAGGTCACCATCAAGGCCGGCGAAACCAGCGCACCGTACACTCACGACGCGCAGGGCGATGACGTCTATCAGGATGCGGGCCAGATCAGCCTGGGCATCAACTCGGCGGTGGACGCCACTGGTG > NC_002947/198629‑198926 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |