Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 199,681 G→C 6.7% V1729V (GTG→GTC PP_0168 → putative surface adhesion protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947199,6810GC 6.7% 301.2 / 12.5 104V1729V (GTG→GTCPP_0168putative surface adhesion protein
Reads supporting (aligned to +/- strand):  ref base G (48/49);  new base C (4/3);  total (52/52)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.11e-01

Only 100 of 105 total aligned reads displayed.

GGCCAGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAAC  >  NC_002947/199538‑199830
                                                                                                                                                  |                                                                                                                                                     
ggCCAGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGGCACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGaa                                                                                                                                                 <  1:1884360/150‑1 (MQ=255)
 gCCAGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAg                                                                                                                                                >  1:1276281/1‑150 (MQ=255)
  ccAGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTTGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAgg                                                                                                                                               <  1:1163690/150‑1 (MQ=255)
   cAGATCAGCTTGGGCATCAACTCGGCGGTCGAGGCAGCTGTTGCGGCAGTCGAGAATCTTGAGCTGGGCGGTGATGGATCAGGTACTCGCCCGAACACTCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGAGATCggaaga                                                                                                                                              >  1:1151993/1‑145 (MQ=9)
    aGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCGCCTTCGGTCACCGAAggg                                                                                                                                              <  1:1868565/150‑2 (MQ=255)
    aGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCg                                                                                                                                             <  1:1769225/150‑1 (MQ=255)
    aGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCg                                                                                                                                             <  1:1441805/150‑1 (MQ=255)
    aGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCg                                                                                                                                             <  2:2269828/150‑1 (MQ=255)
      aTCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGt                                                                                                                                           <  2:42913/150‑1 (MQ=255)
      aTCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTCACCGAAggggtg                                                                                                                                           <  1:300657/150‑5 (MQ=255)
        cAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTga                                                                                                                                         <  1:845539/150‑1 (MQ=255)
        cAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTga                                                                                                                                         <  1:1564474/150‑1 (MQ=255)
          gCTTGGGCATCACCTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCAACCCTTCGGTGACCGAAGGCGGTgaga                                                                                                                                       <  1:1529639/150‑1 (MQ=255)
          gCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCATGCGCCGCTGTTGGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTgaga                                                                                                                                       >  2:1871263/1‑150 (MQ=17)
            ttGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGt                                                                                                                                           >  1:1195560/1‑144 (MQ=255)
            ttGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGt                                                                                                                                           <  2:1195560/144‑1 (MQ=255)
              gggCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCAc                                                                                                                                   <  1:1686144/150‑1 (MQ=255)
                gCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCt                                                                                                                                 >  1:600790/1‑150 (MQ=255)
                 cATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGCTGACCGAAGGCGGTGAGACCACCTa                                                                                                                                >  2:494790/1‑150 (MQ=255)
                  aTCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTac                                                                                                                               >  1:2051532/1‑150 (MQ=255)
                   tCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTaca                                                                                                                              <  1:949114/150‑1 (MQ=255)
                   tCAACTCGGCGGTGGACGCCACTGGTGCTGCATCCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTaca                                                                                                                              >  2:35545/1‑150 (MQ=255)
                     aaCTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACAcc                                                                                                                            <  2:1030670/150‑1 (MQ=255)
                        tCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGGCGGGAGGCGGTGAGATCACCTACACCATc                                                                                                                         <  1:1871263/150‑1 (MQ=255)
                        tCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCAc                                                                                                                                   <  2:1905848/140‑1 (MQ=255)
                        tCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCAc                                                                                                                                   >  1:1905848/1‑140 (MQ=255)
                          ggcggTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGa                                                                                                                                                      >  1:1527596/1‑119 (MQ=255)
                          ggcggTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGa                                                                                                                                                      <  2:1527596/119‑1 (MQ=255)
                           gcggTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCAcc                                                                                                                      <  1:767862/150‑1 (MQ=255)
                             ggTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCt                                                                                                                    <  2:575003/150‑1 (MQ=40)
                                 gACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGAcc                                                                                                                >  2:178504/1‑150 (MQ=39)
                                 gACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGAcc                                                                                                                >  2:1378667/1‑150 (MQ=39)
                                          ggTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGAc                                                                                                       <  1:1378667/150‑1 (MQ=39)
                                          ggTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGAc                                                                                                       <  2:600790/150‑1 (MQ=39)
                                           gTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACg                                                                                                      <  2:2051532/150‑1 (MQ=37)
                                            tgctgcATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACgg                                                                                                     >  1:2088779/1‑150 (MQ=38)
                                              ctgcATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCNCCGACACCCTCGACGAAGTGGTGGCCAAGCTCACTGCCACCCCGTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTc                                                                                                   >  1:327578/1‑150 (MQ=255)
                                              ctgcATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCCTCAc                                                                                                                       <  2:604102/130‑1 (MQ=255)
                                              ctgcATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCAc                                                                                                                       >  1:604102/1‑130 (MQ=40)
                                               tgcATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGt                                                                                                                                           <  2:1858781/109‑1 (MQ=255)
                                               tgcATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGt                                                                                                                                           >  1:1858781/1‑109 (MQ=255)
                                                 cATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGc                                                                                                <  1:1396812/150‑1 (MQ=38)
                                                  aTTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGCGCTCTCCTACACCATCACCCTGACCAACAAAGACGGTCTGcc                                                                                               >  1:1231121/1‑150 (MQ=255)
                                                    tCGAGAACCTTGAGATGGGAGGTGATGATTCAGTACTAGTCATCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCATCAAAGACGGTCTGCCGa                                                                                             <  2:1231121/150‑1 (MQ=11)
                                                     cGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTAAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGAGGTGAGATCACCTACACCATCACCCTGCCCAACAAAGATTGTCTGCCGAt                                                                                            <  2:92644/150‑1 (MQ=11)
                                                      gagaACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCTACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGCCCAACAAAGACGGTCTGCCGATc                                                                                           >  1:192712/1‑150 (MQ=21)
                                                      gagaACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATc                                                                                           >  2:607921/1‑150 (MQ=34)
                                                           ccTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGACACCCCTTCGGTGACCGAAGGCGGt                                                                                                                                           >  2:2349595/1‑97 (MQ=255)
                                                           ccTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGACACCCCTTCGGTGACCGAAGGCGGt                                                                                                                                           <  1:2349595/97‑1 (MQ=255)
                                                            cTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGt                                                                                                                                           <  2:1969583/96‑1 (MQ=39)
                                                            cTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGt                                                                                                                                           >  1:1969583/1‑96 (MQ=39)
                                                            cTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCAcc                                                                                                                      <  1:1073200/117‑1 (MQ=38)
                                                            cTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCAcc                                                                                                                      >  2:1073200/1‑117 (MQ=38)
                                                                  cTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCg                                                                               <  1:1182030/150‑1 (MQ=39)
                                                                   tGGGCGGTGCTGCTTCGGTTCAAGTCAGCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCCATAACCACTCgg                                                                              >  1:452297/1‑150 (MQ=255)
                                                                   tGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCTCCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCgg                                                                              <  1:987728/150‑1 (MQ=38)
                                                                   tGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCgg                                                                              >  1:1154151/1‑150 (MQ=38)
                                                                      gCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGc                                                                           <  1:1802052/150‑1 (MQ=37)
                                                                               ctTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCa                                                                  >  1:2067311/1‑150 (MQ=32)
                                                                                ttCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCaa                                                                 <  1:1350554/150‑1 (MQ=32)
                                                                                ttCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTCCCACCCCTCCGGTGACCGAAGGCGGTCAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGCCCACTCACCCCCCGCAGCTGTCCTTCaa                                                                 >  2:138465/1‑150 (MQ=11)
                                                                                 tCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAg                                                                <  1:138465/150‑1 (MQ=32)
                                                                                     gTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCAACCTGACCAACAAAGACGGTCTGCCGAACAATAACCACTCGGAGCTGTACTTCAAGCTg                                                             >  1:769738/1‑150 (MQ=17)
                                                                                     gTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGAGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTg                                                             >  2:692519/1‑150 (MQ=17)
                                                                                      ttCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGt                                                                        <  2:1707859/138‑1 (MQ=33)
                                                                                      ttCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGt                                                                        >  1:1707859/1‑138 (MQ=33)
                                                                                            tCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAAt                                                                                        <  2:1736249/116‑1 (MQ=11)
                                                                                              aCCGACACCCTCGACGAAGTTGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGACCCTACCCACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGc                                                    <  2:1399006/150‑1 (MQ=11)
                                                                                               ccGACACCCTCGACGCAGTGGTGGCCAAGCTGACTGCCACCCCTTCGTTGACCGAAGGCGGTGAGATCCCCTACACCATCACCCTGCCCAACAAAGACGGTCTGCCGATCAATAACCACTCGCCGCTGTACTTCAAGCTGACCGACGGca                                                   >  1:794557/1‑150 (MQ=11)
                                                                                                  acacCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGcacca                                                <  2:2067311/150‑1 (MQ=32)
                                                                                                   cacCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGcaccac                                               <  1:607921/150‑1 (MQ=32)
                                                                                                    acCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACt                                              >  1:436789/1‑150 (MQ=32)
                                                                                                      ccTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGa                                                                             >  2:896899/1‑117 (MQ=33)
                                                                                                      ccTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGa                                                                             <  1:896899/117‑1 (MQ=33)
                                                                                                      ccTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTgt                                            >  2:489692/1‑150 (MQ=35)
                                                                                                       cTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGTAGCGGTACTTCAAGCTGACCTACGGCACCACTgtc                                           >  2:1229862/1‑150 (MQ=255)
                                                                                                       cTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTgtc                                           <  1:489692/150‑1 (MQ=35)
                                                                                                       cTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTgtc                                           <  2:1154151/150‑1 (MQ=35)
                                                                                                        tCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTgtcg                                          >  1:397829/1‑150 (MQ=35)
                                                                                                                 gtggtgGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCa                                  >  2:736389/1‑150 (MQ=35)
                                                                                                                 gtggtgGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGAgggt                                  <  2:436789/150‑3 (MQ=25)
                                                                                                                       gCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAAc                            >  2:2100836/1‑150 (MQ=35)
                                                                                                                       gCCAAGCTGACTCCCACCGGGTCGCTGACCGAGGGCGGTGTGTTCACCTACACCATCACCTCGACCAACCTGGACTGTCTGCCGATCAATAACCACTCGTAGCTGTACTTCAAGCTGACCGACGGCACCTCTGTCGTCGGGGCAGCCAAc                            <  2:452297/150‑1 (MQ=11)
                                                                                                                         cAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTg                                                                         <  2:762853/103‑1 (MQ=33)
                                                                                                                         cAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTg                                                                         >  1:762853/1‑103 (MQ=32)
                                                                                                                         cAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACCTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAg                          >  1:820396/1‑150 (MQ=21)
                                                                                                                          aaGCTGACCGCCCCCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGc                         <  1:494790/150‑1 (MQ=25)
                                                                                                                                  tGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACggg                 >  1:170072/1‑150 (MQ=38)
                                                                                                                                    tcaccgccTTCGGTCACCGAAGGGGTGAGATCACCTAGACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCt               >  1:1952331/7‑150 (MQ=11)
                                                                                                                                    tcaccgccTTCGGTCACCGAAGGGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCa                                  <  1:190365/125‑1 (MQ=11)
                                                                                                                                    tcaccgccTTCGGTCACCGAAGGGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCa                                  >  2:190365/7‑131 (MQ=11)
                                                                                                                                    tcaccgccTTCGGTCACCGAAGGGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCt               >  2:2185060/7‑150 (MQ=11)
                                                                                                                                    tcaccgccTTCGGTCACCGAAGGGGTGAGATCACCTAAACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCt               >  1:1952035/7‑150 (MQ=11)
                                                                                                                                      aCCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGCCCAAGACACACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGCCGGCACCCCTCTCGTCGTGGCAGCCAACAGCACCACCGGcgcg             >  2:592920/1‑150 (MQ=11)
                                                                                                                                      aCCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCg             >  2:2099312/1‑150 (MQ=40)
                                                                                                                                       ccccTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCgg            >  1:1866052/1‑150 (MQ=39)
                                                                                                                                           cTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCAAAAATTTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGa         >  1:1706368/1‑150 (MQ=255)
                                                                                                                                             tCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACt       <  1:35545/150‑1 (MQ=255)
                                                                                                                                                 tGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACCTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCaa   <  2:820396/150‑1 (MQ=255)
                                                                                                                                                  gACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAAc  <  2:170072/150‑1 (MQ=40)
                                                                                                                                                  |                                                                                                                                                     
GGCCAGATCAGCTTGGGCATCAACTCGGCGGTGGACGCCACTGGTGCTGCATTCGAGAACCTTGAGCTGGGCGGTGCTGCTTCGGTTCAAGTCACCGACACCCTCGACGAAGTGGTGGCCAAGCTGACTGCCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGACGGCACCACTGTCGTCGTGGCAGCCAACAGCACCACGGGCTCGGCGACTGCAAC  >  NC_002947/199538‑199830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: