Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 2,281,073 T→A 6.5% intergenic (+88/‑149) fadH → / → PP_2009 2,4‑dienoyl‑CoA reductase/1‑aminocyclopropane‑1‑carboxylate deaminase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029472,281,0730TA 6.5% 386.0 / 12.2 121intergenic (+88/‑149)fadH/PP_20092,4‑dienoyl‑CoA reductase/1‑aminocyclopropane‑1‑carboxylate deaminase
Reads supporting (aligned to +/- strand):  ref base T (50/62);  new base A (4/4);  total (54/67)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.08e-01

Only 100 of 122 total aligned reads displayed.

CGGCCGAGCTGGATGCCAAGCGGGCGATCAACCAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTACAAGCGCTTGCGGGATTACCCTGTAAACTGCGA  >  NC_002947/2280924‑2281218
                                                                                                                                                      |                                                                                                                                                 
     gAGCTGGATGCCAAGCGGGCGATCAACCAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCg                                                                                                                                              <  1:707041/150‑1 (MQ=255)
       gcgggATGCTAAGCGGGCGAGCAACCAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGgt                                                                                                                                            <  2:2067855/147‑1 (MQ=255)
       gCTGGATGCCAAGCGGGCGATCAACCAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGGGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGgt                                                                                                                                            <  1:1747690/150‑1 (MQ=255)
         tGGATGCCAAGCGGGCGATCAACCAAGGCTCGCGGTTGGCGGCTGAGCTCGGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGgtgt                                                                                                                                          >  2:577331/1‑150 (MQ=255)
           gATGCCAAGCGGGCGATCAACCAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGttt                                                                                                                                        >  2:2350358/1‑149 (MQ=255)
               ccAAGCGGGCGATCAACCAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCgg                                                                                                                                    <  1:1865912/150‑1 (MQ=255)
               ccAAGCGCGCGATCAAACAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTCCACGCGTGGGATCTGGCATGCCCGCGAACCAGGCGACGCGGTGGATGGCACCGGCGTTGCCGGTGTTCGCgg                                                                                                                                    <  2:87974/150‑1 (MQ=38)
                cAAGCGGGCGATCAACCAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTAGCGATGAAGGGCGGGGCAGGCCCGCTAAGCAGGTGAAGCGGCGGATGGCACCGGCATTGCCGGTGTTCGCggg                                                                                                                                   >  1:1853022/1‑150 (MQ=255)
                cAAGCGGGCGATCAACCAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCggg                                                                                                                                   >  1:2013708/1‑150 (MQ=255)
                 aaGCGGGCGATCAACCAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGt                                                                                                                                  <  1:450111/150‑1 (MQ=255)
                      ggCGATCAACCAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAAcc                                                                                                                             <  2:2013708/150‑1 (MQ=255)
                       gCGATCAACCAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAAccc                                                                                                                            <  2:2387494/150‑1 (MQ=255)
                         gATCAACCAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGc                                                                                                                          >  1:484360/1‑150 (MQ=255)
                           tCAACCAAGGCTCGCGGTTGGCGGCTGACGACTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTc                                                                                                                        >  1:675692/1‑150 (MQ=255)
                             aaCCAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGAGAAACAGGTGACGCGGTGGATGGCACCGGCATTg                                                                                                                                                 <  1:1002006/123‑1 (MQ=255)
                             aaCCAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGAGAAACAGGTGACGCGGTGGATGGCACCGGCATTg                                                                                                                                                 >  2:1002006/1‑123 (MQ=255)
                               ccAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCgg                                                                                                                                    >  1:458499/1‑134 (MQ=255)
                               ccAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCgg                                                                                                                                    <  2:458499/134‑1 (MQ=255)
                               ccAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTac                                                                                                                    >  2:528102/1‑150 (MQ=255)
                                cAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCAATGcc                                                                                                                                               <  1:2207522/122‑1 (MQ=255)
                                cAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCAATGcc                                                                                                                                               >  2:2207522/1‑122 (MQ=255)
                                    gCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCTGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACgg                                                                                                               <  1:2137166/150‑1 (MQ=255)
                                    gCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACgg                                                                                                               >  2:1454255/1‑150 (MQ=255)
                                    gCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACgg                                                                                                               <  1:1342797/150‑1 (MQ=255)
                                      tCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAAcc                                                                                                                             >  1:726656/1‑134 (MQ=255)
                                      tCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAAcc                                                                                                                             <  2:726656/134‑1 (MQ=255)
                                              ggcggcTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCgg                                                                                                     <  1:1572434/150‑1 (MQ=255)
                                               gcggcTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGcc                                                                                                       <  2:37549/147‑1 (MQ=255)
                                               gcggcTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGcc                                                                                                       >  1:37549/1‑147 (MQ=255)
                                               gcggcTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCggg                                                                                                    <  1:603646/150‑1 (MQ=255)
                                               gcggcTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCggg                                                                                                    <  1:2284781/150‑1 (MQ=255)
                                                cggcTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCgggg                                                                                                   <  2:560086/150‑1 (MQ=255)
                                                    tGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATc                                                                                               >  2:848446/1‑150 (MQ=255)
                                                    tGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATc                                                                                               >  2:2077444/1‑150 (MQ=255)
                                                    tGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATc                                                                                               >  2:1105559/1‑150 (MQ=255)
                                                       gCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGCTGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCggt                                                                                            >  2:689158/1‑148 (MQ=255)
                                                       gCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCAACTGTCGGTGGTTGAGCCGGTTCCGACGACGGGCTGTGCCGGGGCATCGAt                                                                                            >  1:2339826/1‑150 (MQ=37)
                                                        ctctGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCg                                                                                                                                              <  1:2138395/99‑1 (MQ=255)
                                                         tctGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGc                                                                                          >  2:1261377/1‑150 (MQ=255)
                                                         tctGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGc                                                                                          <  2:1340943/150‑1 (MQ=255)
                                                         tctGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGc                                                                                          <  1:2077444/150‑1 (MQ=255)
                                                         tctGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGc                                                                                          >  2:757273/1‑150 (MQ=255)
                                                            gAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCtg                                                                                       >  2:1475790/1‑150 (MQ=255)
                                                               gTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTgtgt                                                                                    >  2:811736/1‑150 (MQ=255)
                                                                ttGTCGGGGCGCTGCCAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTc                                                                                   >  2:1306574/1‑150 (MQ=38)
                                                                  gTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGa                                                                                 <  1:811736/150‑1 (MQ=255)
                                                                   tCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAg                                                                                >  1:773676/1‑150 (MQ=255)
                                                                        gCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTg                                                                                                                                 <  1:956540/96‑1 (MQ=255)
                                                                          tGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCt                                                                         <  1:1326971/150‑1 (MQ=255)
                                                                            cGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGACCCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTgg                                                                       <  2:197069/150‑1 (MQ=255)
                                                                                aGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACt                                                                   <  1:1454255/150‑1 (MQ=255)
                                                                                   ccGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGa                                                                                 >  2:492932/1‑133 (MQ=255)
                                                                                   ccGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGa                                                                                 <  1:492932/133‑1 (MQ=255)
                                                                                    cGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGa                                                               <  2:2404898/150‑1 (MQ=255)
                                                                                    cGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGa                                                               >  2:1219601/1‑150 (MQ=255)
                                                                                     gACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGAt                                                              <  1:1356976/150‑1 (MQ=255)
                                                                                        acCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGcc                                                           >  1:1088848/1‑150 (MQ=255)
                                                                                         ccTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCgg                                                                                                                                    >  1:728045/1‑76 (MQ=255)
                                                                                         ccTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCgg                                                                                                                                    <  2:728045/76‑1 (MQ=255)
                                                                                           tGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGt                                                                                                                                  >  1:794657/1‑76 (MQ=255)
                                                                                           tGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGt                                                                                                                                  <  2:794657/76‑1 (MQ=255)
                                                                                           tGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTcg                                                        >  1:1084704/1‑150 (MQ=255)
                                                                                                    tGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCggcgggggc                                                >  2:2374129/1‑150 (MQ=255)
                                                                                                      ggAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCTGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCggcgggggcgg                                              <  1:574758/150‑1 (MQ=255)
                                                                                                      ggAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCa                                                                             >  1:1326703/1‑119 (MQ=255)
                                                                                                      ggAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCggcgggggcgg                                              <  2:1084704/150‑1 (MQ=255)
                                                                                                      ggAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCggcgggggcgg                                              <  1:1306574/150‑1 (MQ=255)
                                                                                                       gAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCtgt                                                                                      >  2:1602772/1‑109 (MQ=255)
                                                                                                       gAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCtgt                                                                                      <  1:1602772/109‑1 (MQ=255)
                                                                                                       gAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCggcgggggcggg                                             <  1:2360705/150‑1 (MQ=255)
                                                                                                         gCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTc                                           <  1:1861060/150‑1 (MQ=255)
                                                                                                            ggCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATc                                        <  2:1692495/150‑1 (MQ=255)
                                                                                                              cATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGa                                      <  1:2404486/150‑1 (MQ=255)
                                                                                                              cATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGa                                      <  1:568449/150‑1 (MQ=255)
                                                                                                              cATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGAATAGGAGGGGGCGGGTCGTCGa                                      >  2:1715443/1‑150 (MQ=38)
                                                                                                                  cccGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTAc                                  <  1:577331/150‑1 (MQ=255)
                                                                                                                  cccGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTAc                                  >  2:2348777/1‑150 (MQ=255)
                                                                                                                   ccGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGc                                                                                          <  1:1041218/93‑1 (MQ=255)
                                                                                                                   ccGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGc                                                                                          >  2:1041218/1‑93 (MQ=255)
                                                                                                                   ccGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCAGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTACa                                 >  1:1548556/1‑150 (MQ=255)
                                                                                                                      cgAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTACAAgc                              <  1:746443/150‑1 (MQ=255)
                                                                                                                        aaaCAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTACAAgcgc                            >  1:1659525/1‑150 (MQ=255)
                                                                                                                             ggTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTACAAGCGCTTGCg                       <  1:1475790/150‑1 (MQ=255)
                                                                                                                              gTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTACAAGCGCTTGCgg                      <  1:1860099/150‑1 (MQ=255)
                                                                                                                              gTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTACAAGCGCTTGCgg                      <  1:848446/150‑1 (MQ=255)
                                                                                                                              gTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTACAAGCGCTTGCgg                      <  1:2348777/150‑1 (MQ=255)
                                                                                                                               tGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGACCCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTACAAGCGCTTGCggg                     <  1:775034/150‑1 (MQ=255)
                                                                                                                               tGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCTCCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTACAAGCGCTTGCggg                     <  2:1562081/150‑1 (MQ=255)
                                                                                                                               tGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATc                                        <  2:1986487/131‑1 (MQ=255)
                                                                                                                                     ggTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTACAAGCGCTTGCGGGATTAcc               <  1:2032775/150‑1 (MQ=255)
                                                                                                                                        ggATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTACAAGCGCTTGCGGGATTACCCTg            <  1:528102/150‑1 (MQ=255)
                                                                                                                                           gaacACCGGCAATGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACtgt                                                                 <  2:1158771/91‑1 (MQ=255)
                                                                                                                                           gaacACCGGCAATGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACtgt                                                                 >  1:1158771/4‑94 (MQ=255)
                                                                                                                                           gaacACCGGCAATGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTACAAGCGCTTGCGGGATTACCCTGTaa         >  2:336195/4‑150 (MQ=255)
                                                                                                                                             gCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCCGGGGCGGGTCATCGATTACACGCGCTTGCGGGATTACCCTGTAAAc       >  1:140966/1‑150 (MQ=255)
                                                                                                                                             acACCGGCAATGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTACAAGCGCTTGCGGGATTAcc               >  2:1596018/2‑142 (MQ=255)
                                                                                                                                             acACCGGCAATGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTACAAGCGCTTGCGGGATTAcc               <  1:1596018/141‑1 (MQ=255)
                                                                                                                                                ccGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTACAAGCGCTTGCGGGATTACCCTGTAAACTGc    <  2:1516280/150‑1 (MQ=255)
                                                                                                                                                    cATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTACAAGCGCTTGCGGGATTAcc               <  2:374928/135‑1 (MQ=255)
                                                                                                                                                    cATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTACAAGCGCTTGCGGGATTAcc               >  1:374928/1‑135 (MQ=255)
                                                                                                                                                      |                                                                                                                                                 
CGGCCGAGCTGGATGCCAAGCGGGCGATCAACCAAGGCTCGCGGTTGGCGGCTGAGCTCTGAGGTTGTCGGGGCTGCGTGAGCCCGACACCTGCACGCGTGGGAGCGGGCATGCCCGCGAAACAGGTGACGCGGTGGATGGCACCGGCATTGCCGGTGTTCGCGGGTGAACCCGCTCCTACGACGGGCTGTGCCGGGGCATCGATGCCTGTGTCGAGCCACCCTGGCACTGTGATGCCTCGGCGGGGGCGGGTCATCGATTACAAGCGCTTGCGGGATTACCCTGTAAACTGCGA  >  NC_002947/2280924‑2281218

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: