Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,544,5310CA40.0% 85.9 / 152.8 125intergenic (+48/+66)mdfA/ampGmultidrug MFS transporter/muropeptide permease AmpG
Reads supporting (aligned to +/- strand):  ref base C (23/52);  new base A (23/27);  total (46/79)
Fisher's exact test for biased strand distribution p-value = 9.15e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.82e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 130 total aligned reads displayed.

TGCATTTTGCCCTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAG  >  NC_002947/1544383‑1544677
                                                                                                                                                    |                                                                                                                                                    
tgcTTTTGGCCGTGGGGGGGGGGGTGGGGGGGGGGTGGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAcaca                                                                                                                                                     <  1:1735573/150‑1 (MQ=38)
tgcATTTTGCCCTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAcaca                                                                                                                                                     >  1:1010874/1‑150 (MQ=255)
tgcATTTTGCCCTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAAACCGCTCCTAcaca                                                                                                                                                     >  2:2974611/1‑150 (MQ=255)
tgaaTTTTGCCGTGGGGGGGGGGGGGGGGGGGGCGTTGGCGCTGTGGCCGGTGTGGTTTGTGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTAcaca                                                                                                                                                     <  1:3888599/147‑1 (MQ=38)
           ggggcgggGGGGGTGGGGGGGGCGTTGGCGCTGGGGCCGCTGGGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCggcgcggcc                                                                                                                                          <  2:3791400/148‑4 (MQ=37)
           cTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCGCGTCGCGGGGTAACCCCCGGCGACACCCGgccgcgccg                                                                                                                                          >  1:251116/1‑150 (MQ=255)
             ggcgggGGGGGTGGGGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCggcgcggccct                                                                                                                                        <  2:1631874/150‑6 (MQ=38)
              gcggggGGGGGGGGGGGGGCGTGGGCGATGTGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGTGTAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCtt                                                                                                                                       <  1:2388096/150‑1 (MQ=38)
                ggcgggggcggcgggggcGCTGGCGCTGTGGCCGCGGTGGGTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTg                                                                                                                                     <  1:2089811/150‑1 (MQ=255)
                 ggggggggggggggggggTGGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGt                                                                                                                                    <  1:1717914/148‑1 (MQ=255)
                 gcggGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGt                                                                                                                                    <  1:2379545/150‑1 (MQ=255)
                  gggggggggggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTa                                                                                                                                   <  2:2346988/149‑1 (MQ=255)
                  gggggggggggggggCGTGGGCGCTGGGGCCGCTGGGGTTTGTGGGGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTa                                                                                                                                   <  2:1527065/149‑1 (MQ=39)
                  gggggggggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                   <  2:2692902/149‑1 (MQ=37)
                  gggggggggCGGGGGCGTTGGCGCTGGGGCCGCTGTGGTTGGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                   <  1:2551142/149‑1 (MQ=25)
                  ggggggTGGGGGGGGCGTTGGCGCTGTGGCCGCTGTGTTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTa                                                                                                                                   <  1:677652/149‑1 (MQ=255)
                  ggggggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                   <  2:654315/149‑1 (MQ=37)
                  cggGGGTGGGGGGGGCGTGGGCGCTGTGGCCGCGGTGGTTTGGGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                   <  2:2020074/150‑1 (MQ=25)
                  cggGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTa                                                                                                                                   <  2:1010874/150‑1 (MQ=255)
                  cggGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGGGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCTGTGCTGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                   <  1:2354261/150‑1 (MQ=21)
                   ggggggggggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAg                                                                                                                                  <  1:1912632/150‑1 (MQ=255)
                   ggggggggggggggCGGGGGCGCGGGGGCCGCGGTGGTTTGGGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATACTCGGTATTGCCGGGGCCGGCCTCTGCGCGGGTAAACCCGCTCCCACAAAGCGGCGCGGCCCTGTGTAg                                                                                                                                  <  2:3206164/150‑1 (MQ=21)
                   ggggggggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAg                                                                                                                                  <  2:3136469/150‑1 (MQ=37)
                   ggggggggCGGGGGCGGGGGCGCTGGGGCCGCGGTGGTTTGGGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAg                                                                                                                                  <  1:3541245/150‑1 (MQ=39)
                   gggggTGGGGGGGGCGTGGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAg                                                                                                                                  <  1:1958614/150‑1 (MQ=255)
                   gggggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAg                                                                                                                                  <  2:626454/150‑1 (MQ=255)
                    ggggTGGGGGGGGCGTTGGCGCTGTGGCCGCTGTGTTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAgg                                                                                                                                 <  1:2874225/150‑1 (MQ=255)
                    ggggTGGGGGGGGCGTGGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAgg                                                                                                                                 <  1:2449877/150‑1 (MQ=37)
                     gggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTTTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGa                                                                                                                                <  2:46999/150‑1 (MQ=255)
                     gggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGa                                                                                                                                <  2:2924831/150‑1 (MQ=255)
                       ggggggggggCGTGGGCGCTGGGGCCGCGGGGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGc                                                                                                                              <  2:1690232/145‑1 (MQ=38)
                       gTGGGGGGGGCGTGGGCGCTGGGGCCGCGGTGGTTTGTGGTGGGTGGGCGGCCGGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGc                                                                                                                              <  2:1690252/150‑1 (MQ=39)
                       gTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGGGGGGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCTGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGc                                                                                                                              <  2:1690130/150‑1 (MQ=255)
                         ggggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGGGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                            <  1:5537/147‑1 (MQ=25)
                         ggggggggCGTTGGCGCTGTGGCCGCTGGGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCgg                                                                                                                            <  1:348223/147‑1 (MQ=255)
                         ggggggggCGTTGGCGCTGGGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCgg                                                                                                                            <  2:1107883/147‑1 (MQ=255)
                         ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCgg                                                                                                                            <  2:1977815/150‑1 (MQ=255)
                         ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                            <  2:1341062/150‑1 (MQ=37)
                         ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                            <  1:1487123/150‑1 (MQ=25)
                         ggCGGGGGCGTGGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCgg                                                                                                                            <  2:1902315/150‑1 (MQ=255)
                         ggCGGGGGCGTGGGCGCTGGGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                            <  1:2665228/150‑1 (MQ=25)
                          gCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCggg                                                                                                                           <  1:2515943/150‑1 (MQ=255)
                            gggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑tt                                                                                                                        <  1:3835183/150‑1 (MQ=255)
                             ggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑ttt                                                                                                                       <  1:228487/150‑1 (MQ=255)
                               ggggTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑c                                                                                                                    <  1:2841323/147‑1 (MQ=25)
                               ggCGTGGGCGCGGTGGCCGCTGTGGTTGGTGGTGGGGGGGCGGCCGGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑c                                                                                                                    <  2:2397611/150‑1 (MQ=21)
                                 ggTTGGGGCTTTGGCCGGTTTGGTTTGTGGTGTGTGGGGGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑ccc                                                                                                                  <  1:3143440/149‑1 (MQ=37)
                                        gcTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                            >  1:1282599/1‑135 (MQ=25)
                                        gcTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                            <  2:1282599/135‑1 (MQ=25)
                                            gggCCGCTGTGGTTTGGGGTGGGGGGGCGGCCTGGGTACGGGGCTGTCGCTCGATAATCGGTTTGGCCGGGGCCGGCCTCTTCGCGGTTAACCCCGCGCCTACACTGGGCGGGGCCGCTTTGTCGGAGGGGG‑TTTA‑CCCGCGAAGAGGcc                                                                                                       <  2:1859993/149‑1 (MQ=25)
                                                        tttGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCACTTCGCGGGTTAAACCGCTCCAACACAGGGCCGCGCCCCTGTGTAGGGGCGGG‑TTTA‑ACCGCGAAGAGGCCAGCACACGCaaa                                                                                           >  2:1982351/1‑149 (MQ=255)
                                                                    gggCGGCGTGGGGACGGGGCTGTAGCTCGATAATCGGTATTGCGGGGGCCGGCCTCTTCGGGGTTAAACCCGCTCCTCCACCGGGCCGCGCCGCTTTGCAGGCGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAg                                                                               <  2:71363/150‑1 (MQ=37)
                                                                    gggCGGCCGGGGGAAGGGGCTGTAGCTCGATAATCGGTAGGGCCGGGGCCGGCCTCTTCGGGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTGGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAg                                                                               <  2:3057115/150‑1 (MQ=37)
                                                                             ggggATGGGGCTGTCGCTCGATAAGCGGTATGGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACCGGGCCGCGCCGCTTTGTTGGAGGGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCa                                                                      <  2:1818297/150‑1 (MQ=37)
                                                                             ggggAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAAACCCCGCCAAAACACCGCCCCCCCGCGTTGGAGGGGCGGGTTTTA‑CCCCCG‑AGAGGCCCGCCCCGGCAAAAACAAGCGTCAGGGCCggccc                                                                      >  2:3784913/1‑146 (MQ=255)
                                                                                         gtcgCTCGTTACTCGGTTGGGCGGGGGCCGGCCTCTGCGGGGGTACCCCCGCTCCTCCCCCGGGCCGCGCGGCTTTGTCGGCGGGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTgg                                                          <  1:2223306/147‑1 (MQ=255)
                                                                                           cgcgcgctAAGCGGTAGGGCCGGGGCCGGCCTCTGCGGGGGTACCCCCGCGCCGCCCCCGGGCCGCGCCGCTTGGTCGGCGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGgtc                                                        <  2:3388584/143‑1 (MQ=25)
                                                                                                     tCGGTAGTGCCGGGGCCGGCCTCTTCGCGGGAACCCCCGCACCTACACAGGGCCGCCCCGCTTTGGAGGAGCGGT‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCAcc                                              <  2:184830/150‑1 (MQ=38)
                                                                                                                    ccggccTCTTCGCGGGTAAACCCCCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAAAACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCcccgcccg                               >  2:248157/1‑150 (MQ=255)
                                                                                                                     cgcccTCTCCGCGGTAAACCCCGCCCCACCACCGGCCCGCGCCGCTTTGTCGGCG‑GGG‑TTTACCCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCgg                              <  1:120838/147‑1 (MQ=255)
                                                                                                                         ctattCGCGGTAAAACCCGCTCCTACACAGGGCCGCGCCGATTTGTAGTAGCGGT‑TTAA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTc                          <  2:670335/147‑1 (MQ=255)
                                                                                                                          tctTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTcc                         >  2:1618427/1‑150 (MQ=255)
                                                                                                                              cgcgGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGT‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGAt                     <  1:2974611/150‑1 (MQ=255)
                                                                                                                               gcgGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATg                    <  2:3923229/150‑1 (MQ=255)
                                                                                                                                 gggTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGcc                  >  1:2090059/1‑150 (MQ=255)
                                                                                                                                   gTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCAc                >  2:1156884/1‑150 (MQ=255)
                                                                                                                                     aaaCCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGa                                                              >  1:711171/1‑102 (MQ=255)
                                                                                                                                       ccccGCCCCCACACGGGGCCGCGCCGTTTTGTCGGCGCGGT‑TTCC‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCTACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCa            <  1:511630/149‑1 (MQ=255)
                                                                                                                                       aCCCCCCCCTACACAGGCCCGCGCCCCTTTTTCGGAGGTGT‑TAAA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCa            <  1:2197826/150‑1 (MQ=255)
                                                                                                                                        cccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAg           >  2:1203310/1‑150 (MQ=37)
                                                                                                                                        cccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAg           >  2:1863304/1‑150 (MQ=37)
                                                                                                                                         ccGCTCCTCCCCCGGGCCGCGCCGCTTGGTCGGCGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg          <  1:2880492/150‑1 (MQ=39)
                                                                                                                                         ccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg          >  1:2857267/1‑150 (MQ=255)
                                                                                                                                         ccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTgg                                                          >  1:1460978/1‑102 (MQ=17)
                                                                                                                                         ccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg          >  2:3749629/1‑150 (MQ=37)
                                                                                                                                          cGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAggg         >  1:2681773/1‑150 (MQ=255)
                                                                                                                                           gCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGc        >  2:2519155/1‑150 (MQ=37)
                                                                                                                                             tCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCga      >  2:1038419/1‑150 (MQ=255)
                                                                                                                                             tCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCga      >  1:402801/1‑150 (MQ=255)
                                                                                                                                             tCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCga      >  1:341310/1‑150 (MQ=255)
                                                                                                                                             tCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGgtc                                                        <  2:1904607/100‑1 (MQ=18)
                                                                                                                                             tCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCga      >  1:1634367/1‑150 (MQ=37)
                                                                                                                                              ccTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgat     >  1:3481874/1‑150 (MQ=255)
                                                                                                                                               cTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatc    >  1:296142/1‑150 (MQ=255)
                                                                                                                                               cTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCGGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatc    >  2:34388/1‑150 (MQ=37)
                                                                                                                                                tACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca   >  2:3465721/1‑150 (MQ=255)
                                                                                                                                                tACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca   >  2:251812/1‑150 (MQ=255)
                                                                                                                                                tACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCACTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca   >  2:3437344/1‑150 (MQ=255)
                                                                                                                                                tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCGGCCCCGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca   >  1:27135/1‑150 (MQ=25)
                                                                                                                                                tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCGGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca   >  2:801718/1‑150 (MQ=37)
                                                                                                                                                tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca   >  2:2318673/1‑150 (MQ=37)
                                                                                                                                                tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca   >  2:408616/1‑150 (MQ=37)
                                                                                                                                                tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca   <  2:451574/150‑1 (MQ=37)
                                                                                                                                                tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca   >  2:2188625/1‑150 (MQ=37)
                                                                                                                                                tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca   >  2:197858/1‑150 (MQ=37)
                                                                                                                                                tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca   >  1:717555/1‑150 (MQ=37)
                                                                                                                                                tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca   >  1:451574/1‑150 (MQ=37)
                                                                                                                                                tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca   >  2:742857/1‑150 (MQ=37)
                                                                                                                                                tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca   <  1:1203310/150‑1 (MQ=37)
                                                                                                                                                 acacAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcag  >  1:1488260/1‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
TGCATTTTGCCCTGGCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAG  >  NC_002947/1544383‑1544677

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑