Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,544,5460TG40.9% 103.1 / 173.5 137intergenic (+63/+51)mdfA/ampGmultidrug MFS transporter/muropeptide permease AmpG
Reads supporting (aligned to +/- strand):  ref base T (30/51);  new base G (30/26);  total (60/77)
Fisher's exact test for biased strand distribution p-value = 7.94e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.34e-01
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 140 total aligned reads displayed.

GCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCACCC  >  NC_002947/1544397‑1544694
                                                                                                                                                     |                                                                                                                                                      
gcggggGGGGGGGGGGGGGCGTGGGCGATGTGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGTGTAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCtt                                                                                                                                                        <  1:2388096/150‑1 (MQ=38)
  ggcgggggcggcgggggcGCTGGCGCTGTGGCCGCGGTGGGTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTg                                                                                                                                                      <  1:2089811/150‑1 (MQ=255)
   gggggggTGGGGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTgtgt                                                                                                                                                     <  1:2619771/148‑1 (MQ=37)
   gcggGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGt                                                                                                                                                     <  1:2379545/150‑1 (MQ=255)
    gggggggggggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTa                                                                                                                                                    <  2:2346988/149‑1 (MQ=255)
    gggggggggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                                    <  1:2812017/149‑1 (MQ=37)
    gggggggggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                                    <  1:2318944/149‑1 (MQ=37)
    gggggggggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                                    <  2:2692902/149‑1 (MQ=37)
    ggggggTGGGGGGGGCGTTGGCGCTGTGGCCGCTGTGTTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTa                                                                                                                                                    <  1:677652/149‑1 (MQ=255)
    cggGGGTGGGGGGGGCGTGGGCGCTGTGGCCGCGGTGGTTTGGGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTa                                                                                                                                                    <  2:2020074/150‑1 (MQ=25)
    cggGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTa                                                                                                                                                    <  2:1010874/150‑1 (MQ=255)
     ggggggggggggggCGGGGGCGCGGGGGCCGCGGTGGTTTGGGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATACTCGGTATTGCCGGGGCCGGCCTCTGCGCGGGTAAACCCGCTCCCACAAAGCGGCGCGGCCCTGTGTAg                                                                                                                                                   <  2:3206164/150‑1 (MQ=21)
     ggggggggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAg                                                                                                                                                   <  2:3136469/150‑1 (MQ=37)
     ggggggggCGGGGGCGGGGGCGCTGGGGCCGCGGTGGTTTGGGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAg                                                                                                                                                   <  1:3541245/150‑1 (MQ=39)
     gggggTGGGGGGGGCGTGGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAg                                                                                                                                                   <  1:1958614/150‑1 (MQ=255)
     gggggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAg                                                                                                                                                   <  2:626454/150‑1 (MQ=255)
      ggggTGGGGGGGGCGTTGGCGCTGTGGCCGCTGTGTTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAgg                                                                                                                                                  <  1:2874225/150‑1 (MQ=255)
      ggggTGGGGGGGGCGTGGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAgg                                                                                                                                                  <  1:2449877/150‑1 (MQ=37)
       gggTGGGGGGGGCGTGGGCGCTGGGGCCGCTGTGGTTTGGGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGa                                                                                                                                                 <  1:1619663/150‑1 (MQ=39)
       gggTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGa                                                                                                                                                 <  2:2924831/150‑1 (MQ=255)
         ggggggggggCGTTGGCGCTGGGGCCGCTGTGGTTTGTGGGGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGc                                                                                                                                               <  1:3530848/145‑1 (MQ=25)
         ggggggggggCGTGGGCGCTGGGGCCGCGGGGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGc                                                                                                                                               <  2:1690232/145‑1 (MQ=38)
         gTGGGGGGGGCGTGGGCGCTGGGGCCGCGGTGGTTTGTGGTGGGTGGGCGGCCGGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGc                                                                                                                                               <  2:1690252/150‑1 (MQ=39)
          tGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCg                                                                                                                                              <  2:565062/150‑1 (MQ=37)
           ggggggggCGTTGGCGGTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                                             <  1:5930/147‑1 (MQ=25)
           ggggggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGGGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                                             <  1:5537/147‑1 (MQ=25)
           ggggggggCGTTGGCGCTGTGGCCGCTGGGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCgg                                                                                                                                             <  1:348223/147‑1 (MQ=255)
           ggggggggCGTTGGCGCTGGGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCgg                                                                                                                                             <  2:1107883/147‑1 (MQ=255)
           ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCgg                                                                                                                                             <  2:1977832/150‑1 (MQ=255)
           ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                                             <  2:1341062/150‑1 (MQ=37)
           ggCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGGGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                                             <  1:1487123/150‑1 (MQ=25)
           ggCGGGGGCGTGGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCgg                                                                                                                                             <  2:1902315/150‑1 (MQ=255)
           ggCGGGGGCGTGGGCGCTGGGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                                             <  1:2665228/150‑1 (MQ=25)
            gCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCggg                                                                                                                                            <  1:2515943/150‑1 (MQ=255)
              gggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑tt                                                                                                                                         <  1:3835183/150‑1 (MQ=255)
               ggggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑ttt                                                                                                                                        <  1:228487/150‑1 (MQ=255)
                 ggCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑c                                                                                                                                     <  1:3318807/150‑1 (MQ=255)
                 ggCGTGGGCGCGGTGGCCGCTGTGGTTGGTGGTGGGGGGGCGGCCGGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑c                                                                                                                                     <  2:2397611/150‑1 (MQ=21)
                   ggTTGGGGCTTTGGCCGGTTTGGTTTGTGGTGTGTGGGGGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGTGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑ccc                                                                                                                                   <  1:3143440/149‑1 (MQ=37)
                   cGTGGGCGCTGGGGCCGCTGGGGTGTGTGGTGGGGGGGCGGCCTGGGGACGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCGACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑ccc                                                                                                                                   <  2:1690494/150‑1 (MQ=38)
                          gcTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCgg                                                                                                                                             >  1:1282599/1‑135 (MQ=25)
                              gggCCGCTGTGGTTTGGGGTGGGGGGGCGGCCTGGGTACGGGGCTGTCGCTCGATAATCGGTTTGGCCGGGGCCGGCCTCTTCGCGGTTAACCCCGCGCCTACACTGGGCGGGGCCGCTTTGTCGGAGGGGG‑TTTA‑CCCGCGAAGAGGcc                                                                                                                        <  2:1859993/149‑1 (MQ=25)
                                                      gggCGGCGTGGGGACGGGGCTGTAGCTCGATAATCGGTATTGCGGGGGCCGGCCTCTTCGGGGTTAAACCCGCTCCTCCACCGGGCCGCGCCGCTTTGCAGGCGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAg                                                                                                <  2:71363/150‑1 (MQ=37)
                                                               ggggAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAAACCCCGCCAAAACACCGCCCCCCCGCGTTGGAGGGGCGGGTTTTA‑CCCCCG‑AGAGGCCCGCCCCGGCAAAAACAAGCGTCAGGGCCggccc                                                                                       >  2:3784913/1‑146 (MQ=255)
                                                                        gCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAAACCCCTCCGACACAGGGCCGCGCCCCGGTGTTGGTGCCGG‑TTTA‑ACCCCCAAGAGGCCACCACCGGCAAAAAAAAACGTCAGGGCCGCGCAGCCCCCCAg                                                                              >  2:300400/1‑150 (MQ=255)
                                                                                       tCGGTAGTGCCGGGGCCGGCCTCTTCGCGGGAACCCCCGCACCTACACAGGGCCGCCCCGCTTTGGAGGAGCGGT‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCAcc                                                               <  2:184830/150‑1 (MQ=38)
                                                                                                      ccggccTCTTCGCGGGTAAACCCCCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAAAACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCcccgcccg                                                >  2:248157/1‑150 (MQ=255)
                                                                                                       tggccTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCgg                                               >  2:1889492/2‑150 (MQ=255)
                                                                                                       cgcccTCTCCGCGGTAAACCCCGCCCCACCACCGGCCCGCGCCGCTTTGTCGGCG‑GGG‑TTTACCCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCgg                                               <  1:120838/147‑1 (MQ=255)
                                                                                                          ccTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGa                                                                                                                                                 >  1:215309/1‑51 (MQ=255)
                                                                                                          ccTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGa                                                                                                                                                 <  2:215309/51‑1 (MQ=255)
                                                                                                           ctattCGCGGTAAAACCCGCTCCTACACAGGGCCGCGCCGATTTGTAGTAGCGGT‑TTAA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTc                                           <  2:670335/147‑1 (MQ=255)
                                                                                                            tctTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTcc                                          >  2:1618427/1‑150 (MQ=255)
                                                                                                                 gcgGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATg                                     <  2:3923229/150‑1 (MQ=255)
                                                                                                                     gTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCAc                                 >  2:1156884/1‑150 (MQ=255)
                                                                                                                       aaaCCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGa                                                                               <  2:711171/102‑1 (MQ=255)
                                                                                                                         aCCCCCCCCTACACAGGCCCGCGCCCCTTTTTCGGAGGTGT‑TAAA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCa                             <  1:2197826/150‑1 (MQ=255)
                                                                                                                          cccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAg                            >  2:1203310/1‑150 (MQ=37)
                                                                                                                           ccGCTCCTCCCCCGGGCCGCGCCGCTTGGTCGGCGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg                           <  1:2880492/150‑1 (MQ=39)
                                                                                                                           ccGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg                           >  1:2857267/1‑150 (MQ=255)
                                                                                                                           ccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTgg                                                                           >  1:1460978/1‑102 (MQ=17)
                                                                                                                           ccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTgg                                                                           <  2:1460978/102‑1 (MQ=17)
                                                                                                                           ccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg                           >  2:2619778/1‑150 (MQ=37)
                                                                                                                           ccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg                           >  2:3749629/1‑150 (MQ=37)
                                                                                                                           ccGCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAgg                           >  2:1670500/1‑150 (MQ=37)
                                                                                                                             gCTCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCGGCCCCGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGc                         >  1:2446808/1‑150 (MQ=21)
                                                                                                                               tCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCga                       >  1:402801/1‑150 (MQ=255)
                                                                                                                               tCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCga                       >  2:1038419/1‑150 (MQ=255)
                                                                                                                               tCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGgtc                                                                         <  2:1904607/100‑1 (MQ=18)
                                                                                                                               tCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGgtc                                                                         >  1:1904607/1‑100 (MQ=18)
                                                                                                                               tCCTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCga                       >  1:1634367/1‑150 (MQ=37)
                                                                                                                                ccTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgat                      >  1:3481874/1‑150 (MQ=255)
                                                                                                                                 cTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatc                     >  1:296142/1‑150 (MQ=255)
                                                                                                                                 cTACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCGGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatc                     >  2:34388/1‑150 (MQ=37)
                                                                                                                                  tACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                    >  2:3465721/1‑150 (MQ=255)
                                                                                                                                  tACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                    >  2:251812/1‑150 (MQ=255)
                                                                                                                                  tACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCACTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                    >  2:3437344/1‑150 (MQ=255)
                                                                                                                                  tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCGGCCCCGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                    >  1:27135/1‑150 (MQ=25)
                                                                                                                                  tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCGGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                    >  2:801718/1‑150 (MQ=37)
                                                                                                                                  tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                    >  2:2188625/1‑150 (MQ=37)
                                                                                                                                  tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                    <  1:1203310/150‑1 (MQ=37)
                                                                                                                                  tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                    >  1:717555/1‑150 (MQ=37)
                                                                                                                                  tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                    >  2:197858/1‑150 (MQ=37)
                                                                                                                                  tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                    >  1:451574/1‑150 (MQ=37)
                                                                                                                                  tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                    >  2:408616/1‑150 (MQ=37)
                                                                                                                                  tACAAAGCGGCGCGGCCCTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                    <  2:451574/150‑1 (MQ=37)
                                                                                                                                  caccccgggCCGCGCCGCTTGGTAGGCGGGGT‑TTAA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatca                    <  1:3423649/144‑1 (MQ=255)
                                                                                                                                     aaagcggcgcggcccTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcagga                 >  2:2471283/8‑150 (MQ=38)
                                                                                                                                     aaagcggcgcggcccTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcagga                 >  2:759480/8‑150 (MQ=38)
                                                                                                                                     aaagcggcgcggcccTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcagga                 >  2:301642/8‑150 (MQ=38)
                                                                                                                                       agcggcgcggcccTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcaggatc               >  1:295346/6‑150 (MQ=255)
                                                                                                                                       aGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcaggatc               >  1:808496/1‑150 (MQ=255)
                                                                                                                                       aGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcaggatc               >  2:129960/1‑150 (MQ=255)
                                                                                                                                       aGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcaggatc               >  1:1638578/1‑150 (MQ=255)
                                                                                                                                       aGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcaggatc               >  1:2006876/1‑150 (MQ=255)
                                                                                                                                        gggCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACTGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcaggatca              >  1:382761/1‑150 (MQ=255)
                                                                                                                                         ggCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCgatcaggatcag             >  1:3600790/1‑150 (MQ=255)
                                                                                                                                           gcgcggcccTGTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTc                                                         >  1:2749146/2‑104 (MQ=255)
                                                                                                                                                   cTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCAcc   >  1:2335343/1‑150 (MQ=255)
                                                                                                                                                    tttGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCAccc  >  1:1719930/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                      
GCGGCGGGGGTGGCGGGGGCGTTGGCGCTGTGGCCGCTGTGGTTTGTGGTGGGTGGGCGGCCTGGGGAAGGGGCTGTAGCTCGATAATCGGTATTGCCGGGGCCGGCCTCTTCGCGGGTAAACCCGCTCCTACACAGGGCCGCGCCGCTTTGTAGGAGCGGG‑TTTA‑CCCGCGAAGAGGCCAGCACAGGCAATACAAAGCTTCAGGGCCGCTCAGCCACCGAGTGGTCGTCCGCCACCGGCGTCCCCCGCCCGGCTTCCTGATGCCACTGCAGGGCGATCAGGATCAGCGTAGGCACCC  >  NC_002947/1544397‑1544694

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑