New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	3974772 =	10 (0.580)	3 (0.180)	3/268	1.9	23.4%	intergenic (‑256/‑85)	PP_3503/PP_3504	sigma‑54 dependent transcriptional regulator/hypothetical protein
	?	NC_002947	3974818 =	10 (0.600)					intergenic (‑302/‑39)	PP_3503/PP_3504	sigma‑54 dependent transcriptional regulator/hypothetical protein

TCCGCGTTGCTTCAAAGTCGCCTCATTGATCGCGAAGTGCAGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3974818‑3974772 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggACTTCACTTCGATGTTTGGGACCATAGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGACCACGCCTTCGAACCTTTCCAGTGCGTAGCCTGGGATGCACCCAACGGTACTGGTGAACTGAGCCT  >  NC_002947/3974818‑3974966                                                                                                                                                                                                      TCCGCGTTGCTTCAAAGTCGCCTCATTGATCGCGAAGTGCAGCGCGGACTTCACTTCGATGTTTGGGACCATAGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGACCACGCCT                                                            <  1:389125/138‑1 TCCGCGTTGCTTCAAAGTCGCCTCATTGATCGCGAAGTGCAGCGCGGACTTCACTTCGATGTTTGGGACCATAGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGACCACGCCT                                                            >  2:389125/1‑138   CGCGTTGCTTCAAAGTCGCCTCATTGATCGCGAAGTGCAGCGCGGACTTCACTTCGATGTTTGGGACCATAGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGACCACGCCTTCGAACCTTTCCAG                                              >  2:63406/1‑150                                               GACTTCACTTCGATGTTTGGGACCATAGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGACCAAACATTTCACGTTGGGCACTGCGTAGCCTGGGATGCACCCAACGGTACTGGTGAACTGAGCCT  <  2:102664/150‑1                                                                                                                                                                                                      TCCGCGTTGCTTCAAAGTCGCCTCATTGATCGCGAAGTGCAGCGCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/3974818‑3974772 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggACTTCACTTCGATGTTTGGGACCATAGAGAGACCGAACCATGAATGCCCCGCTCCGTGTCAACGAAGCACTGCTGATTGCCGACCACGCCTTCGAACCTTTCCAGTGCGTAGCCTGGGATGCACCCAACGGTACTGGTGAACTGAGCCT  >  NC_002947/3974818‑3974966

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.