New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | NC_002947 | 3387807 = | 16 (0.930) | 5 (0.310) | 5/262 | 1.3 | 23.2% | coding (545/795 nt) | PP_2989 | short‑chain dehydrogenase/reductase family oxidoreductase |
? | NC_002947 | 3387849 = | 18 (1.110) | coding (587/795 nt) | PP_2989 | short‑chain dehydrogenase/reductase family oxidoreductase |
GCGATCGTCAACGTGGGTTCAGTGGTGGGTTTTGCGCCCGAGTTCGGCATGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTCGATGCTGCACTTGTCGGTTTCGACCGTCGCGAGTTGGTAACCATCCCGCCAC > NC_002947/3387662‑3387947 | ccgtgacgtgcaccttccagtgcatcccagcgctcggcaacatgaagtggcgggatggttaccaactcgcgacggtcgaaaccgacaagtgcagcatcgaccagctcaccgacctccatcacctccgggagtgtgttgacgtcaaTGCCg > 2:42495‑M1/146‑150 (MQ=255) ccttccagtgcatcccagcgctcggcaacatgaagtggcgggatggttaccaactcgcgacggtcgaaaccgacaagtgcagcatcgaccagctcaccgacctccatcacctccgggagtgtgttgacgtcaaTGCCGGCAGCGACCCGc < 2:141712‑M1/17‑1 (MQ=255) tcccagcgctggcaacatgaagtggcgggatggttaccaactcgcgacggtcgaaaccgacaagtgcagcatcgaccagctcaccgacctccatcacctccgggagtgtgttgacgtcaaTGCCGGCAGCGACCCGCACCGAGATCTggg < 2:323755‑M1/30‑1 (MQ=255) caacatgaagtggcgggatggttaccaactcgcgacggtcgaaaccgacaagtgcagcatcgaccagctcaccgacctccatcacctccgggagtgtgttgacgtcaaTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCa > 1:323755‑M1/109‑150 (MQ=255) gAGTTCGGCATGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCAtt < 2:303312/150‑1 (MQ=255) acatgaagtggcgggatggttaccaactcgcgacggtcgaaaccgacaagtgcagcatcgaccagctcaccgacctccatcacctccgggagtgtgttgacgtcaaTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCAtt > 1:141712‑M1/107‑150 (MQ=255) ggCATGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTc > 1:346524/1‑150 (MQ=255) gcgggatggttaccaactcgcgacggtcgaaaccgacaagtgcagcatcgaccagctcaccgacctccatcacctccgggagtgtgttgacgtcaaTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAaca > 2:388556‑M1/97‑150 (MQ=255) aTCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTc > 1:119902/1‑150 (MQ=255) ggCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAg < 2:322788/150‑1 (MQ=255) gcTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACACAAGGGCGTGTACGTGCAAGGGGTGCTTCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTg > 1:155510/1‑150 (MQ=255) aCCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTggg < 2:217370/109‑1 (MQ=255) aCCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTggg > 1:217370/1‑109 (MQ=255) aCCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATg > 2:164845/1‑150 (MQ=255) aaGCCTTCGTGCTGGTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAgg > 1:318590/1‑150 (MQ=255) caGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGa > 1:2299/1‑116 (MQ=255) caGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGa < 2:2299/116‑1 (MQ=255) tGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTgg < 1:315537/132‑1 (MQ=255) tGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTgg > 2:315537/1‑132 (MQ=255) ggAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAg < 1:220506/112‑1 (MQ=255) ggAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAg > 2:220506/1‑112 (MQ=255) aaGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTCGATGCTGCACTTGTCGGTTTCGACCGTCGCGAGTTGGTAACCATCCCGCCAc < 2:318590/150‑1 (MQ=255) | GCGATCGTCAACGTGGGTTCAGTGGTGGGTTTTGCGCCCGAGTTCGGCATGTCCATCTACGGCGCTACCAAAGCCTTCGTGCTGTTTCTGTCACAGGGGCTGAGTCAGGAGCTGTCACCCAAGGGCGTGTACGTGCAAGCGGTGCTGCCGGCAGCGACCCGCACCGAGATCTGGGCGCGTGCCGGCATTGACGTCAACACACTCCCGGAGGTGATGGAGGTCGGTGAGCTGGTCGATGCTGCACTTGTCGGTTTCGACCGTCGCGAGTTGGTAACCATCCCGCCAC > NC_002947/3387662‑3387947 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |