New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 5190394	9 (0.520)	3 (0.190)	3/258	1.8	28.1%	intergenic (‑81/+93)	PP_4570/cysK	hypothetical protein/cysteine synthase A
	?	NC_002947	= 5190411	7 (0.440)					intergenic (‑98/+76)	PP_4570/cysK	hypothetical protein/cysteine synthase A

AAACACCAGCAAGACACCCGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGC  >  NC_002947/5190269‑5190529                                                                                                                                               |                                                                                                                       aaaCACCAGCAAGACACCCGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGggcggga                                                                                                                 >  1:210992‑M2/1‑143 (MQ=255)                           cTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATaa                                                                                       <  1:90917/150‑1 (MQ=255)                                               cTTTCCCTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTgc                                                                   <  2:75130/150‑1 (MQ=255)                                                           gAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCg                                                       <  1:121379/150‑1 (MQ=255)                                                              gAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCggga                                                    >  1:146905/1‑148 (MQ=255)                                                                              gctgcCTGCTCTCCAGAAAATAATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGTGGCAAGGCCGATTActgctg                                    >  2:196934/1‑150 (MQ=255)                                                                                tgcctgcTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTggg                                  <  1:383711/150‑1 (MQ=255)                                                                                  cctgcTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGtt                                <  1:369058/150‑1 (MQ=255)                                                                                           cAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGgg                                                                                                                      >  1:243735‑M2/1‑53 (MQ=255)                                                                                           cAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGgg                                                                                                                      <  2:243735‑M2/55‑3 (MQ=255)                                                                                                                tAAACCGATCCCGCCGCGGTAAAAACAACCCGggcgggatcggtttatgatggcaggatgattttctggagagcaggcagcgcagccgtgactcttcctcaaggagtgaaagcatgaccttttcctttccagccaaggcaggtgtcctgg  <  1:174933‑M2/150‑119 (MQ=255)                                                                                                                        tCCCGCCGCGGTAAAAACAACCCGggcgggatcggtttatgatggcaggatgattttctggagagcaggcagcgcagccgtgactcttcctcaaggagtgaaagcatgac                                  >  1:230319‑M2/1‑24 (MQ=255)                                                                                                                        tCCCGCCGCGGTAAAAACAACCCGggcgggatcggtttatgatggcaggatgattttctggagagcaggcagcgcagccgtgactcttcctcaaggagtgaaagcatgac                                  <  2:230319‑M2/110‑87 (MQ=255)                                                                                                                                               |                                                                                                                       AAACACCAGCAAGACACCCGCCTTGGCTGCAAAGGAAAAGGTCATGCTTTCACTCCTTGAGGAAGAGTCACGGCTGCGCTGCCTGCTCTCCAGAAAATCATCCTGCCATCATAAACCGATCCCGCCGCGGTAAAAACAACCCGGGCGGGATCGCATTCATGAAGATTTTGCAATAAACCAGTCCGCCGATCGTTGCGCCGGATCAGCGGCAAGGCCGATTACTGCTGGGTTTCCTGCTCGCTGAACATGTCGCTGAACAGC  >  NC_002947/5190269‑5190529

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.