New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 1967220	3 (0.170)	7 (0.540)	6/212	0.9	86.0%	intergenic (+47/+72)	PP_1762/yciK	hypothetical protein/putative oxidoreductase
	?	NC_002947	= 1967250	0 (0.000)					intergenic (+77/+42)	PP_1762/yciK	hypothetical protein/putative oxidoreductase

TGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCAT  >  NC_002947/1967106‑1967363                                                                                                                                                 |                                                                                                                  tcatgccggtgtacctgtatctgatggggccggacagcacaggggtgaacgggcaggcgttcaacgcccaataaacctgcatCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGCAGGGCGCAACCCTCAAGGATTGCGCCCTGCCtgt                                                                                                              >  1:399605‑M1/83‑150 (MQ=255)         gtgtacctgtacctgatggggccggacagcacaggggtgaacgggcaggcgttcaacgcccaataaacctgtacCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCgg                                                                                                      >  2:154876‑M1/75‑150 (MQ=255)                     ctgatggggccggacagcacaggggtgaacgggcaggcgttcaacgcctaataaacctgcatCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGa                                                                                                          >  2:366669‑M1/63‑134 (MQ=255)                     ctgatggggccggacagcacaggggtgaacgggcaggcgttcaacgcctaataaacctgcatCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGa                                                                                                          <  1:366669‑M1/72‑1 (MQ=255)                      tgatggggccggacagcacaggggtgaacgggcaggcgttcaacgcccaataaacctgcatCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTgg                                                                                                            <  1:190597‑M1/70‑1 (MQ=255)                      tgatggggccggacagcacaggggtgaacgggcaggcgttcaacgcccaataaacctgcatCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTgg                                                                                                            >  2:190597‑M1/62‑131 (MQ=255)                                                                                                   ttGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgc                         >  1:367917‑M2/1‑47 (MQ=255)                                                                                                   ttGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgc                         <  2:367917‑M2/137‑91 (MQ=255)                                                                                                   aaGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCcctgcc                                                                                                                 >  1:356910‑M1/3‑49 (MQ=255)                                                                                                   aaGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCcctgcc                                                                                                                 <  2:356910‑M1/47‑1 (MQ=255)                                                                                                       ccGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagctgcatgca        <  1:32445‑M2/150‑108 (MQ=255)                                                                                                       ccGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagctgcatgca        >  2:32445‑M2/1‑43 (MQ=255)                                                                                                       ccGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagct               <  1:64585‑M2/143‑101 (MQ=255)                                                                                                       ccGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagct               >  2:64585‑M2/1‑43 (MQ=255)                                                                                                           tCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGcctgtgggagcgggcaagcccgcgaagaggccggtacaggaaagcgatcagcccgcagccaacgccggccgcatacggccttgctggcgcccttccagctgcatgcagcgc    <  1:84726‑M2/150‑112 (MQ=255)                                                                                                             CCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCAt  <  2:226736‑M1/150‑1 (MQ=255)                                                                                                              CACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCt                                                      <  2:157327‑M1/97‑1 (MQ=255)                                                                                                              CACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCt                                                      >  1:157327‑M1/1‑97 (MQ=255)                                                                                                                                                 |                                                                                                                  TGGAGCGCTGCATGCAGCTGGAAGGGCGCCAGCAAGGCCGTATGCGGCCGGCGTTGGCTGCGGGCTGATCGCTTTCCTGTACCGGCCTCTTCGCGGGCTTGCCCGCTCCCACAGGATCACCGCAACCCTCAAGGATTGCGCCCTGCCTGTGGGAGCGGGCAAGCCCGCGAAGAGGCCGATGCAGGTTTATTGGGCGTTGAACGCCTGCCCGTTCACCCCTGTGCTGTCCGGCCCCATCAGGTACAGGTACACCGGCAT  >  NC_002947/1967106‑1967363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.