New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	741602 =	NA (NA)	6 (0.200)	6/254	2.9	NA	intergenic (+199/‑301)	PP_t12/PP_0635	tRNA‑Thr/group II intron‑encoding maturase
	?	NC_002947	741618 =	NA (NA)					intergenic (+215/‑285)	PP_t12/PP_0635	tRNA‑Thr/group II intron‑encoding maturase

GGATCTACGTCACAGCGTTCCGTGCAAGTATTGGGCTTTGGCGATTTGTGCCACCTCACCCCGCTGTGCCGCCTCTATCCGCTTCCTGTTCGTCAGGCCAGCATTTTGCCTCGGGCTTCCTTCAGATTCGCGGTCACCCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/741744‑741602 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgaATCTGAAGGAAGCCCGAGGCAAAATGCTGGCCTGACGAACAGGAAGCGGATAGAGGCGGCACAGCGGGGTGAGGTGGCACAAATCGCCAAAGCCCAATACTTGCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTC  >  NC_002947/741618‑741766                                                                                                                                                                                                                                                                                                      GGATCTACGTCACAGCGTTCCGTGCAAGTATTGGGCTTTGGCGATTTGTGCCACCTCACCCCGCTGTGCCGCCTCTATCCGCTTCCTGTTCGTCAGGCCAGCATTTTGCCTCGGGCTTCCTTCAGATTCGCGGGTGACCGCGAATCTGAA                                                                                                                                                >  1:121806/1‑150                       TGCAATTATTTGGCTTTGGCGATTTGCGCCACCTCACCCCGCTGTGCCGCCTCAAGCCGCTTCCTGTTCGTCAGGCCAGCATTTTGCCTCGGGCTTACTTCAGATTCGCGGGTGACCGCGATTCTGAAGGAAGCCCGAGGCAAAATGCTG                                                                                                                          <  2:121806/150‑1                                        GGCGATTTGTGCCACCTCACCCCGCTGTGCCGCCTCTATCCGCTTCCTGTTCGTCAGGCCAGCATTTTGCCTCGGGCTTCCTTCAGATTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGA                                                                                                                                      <  1:282256/121‑1                                        GGCGATTTGTGCCACCTCACCCCGCTGTGCCGCCTCTATCCGCTTCCTGTTCGTCAGGCCAGCATTTTGCCTCGGGCTTCCTTCAGATTCGCGGGTGACCGCGAATCTGAAGGAAGCCCGA                                                                                                                                      >  2:282256/1‑121                                                      CCTCACCCCGCTGTGCCGCCTCTATCCGCTTCCTGTTCGTCAGGCCAGCATTTTGCCTCGGGCTTCCTTCAGATTCGCGGTCACCCG                                                                                                                                                          <  1:168867/87‑1                                                      CCTCACCCCGCTGTGCCGCCTCTATCCGCTTCCTGTTCGTCAGGCCAGCATTTTGCCTCGGGCTTCCTTCAGATTCGCGGTCACCCG                                                                                                                                                          >  2:168867/1‑87                                                       CTCACCCCGCTGTGCCGCCTCTATCCGCTTCCTGTTCGTCAGGCCAGCATTTTGCCTCGGGCTTCCTTCAGATTCGCGGTCACCCGCGA                                                                                                                                                       <  2:586632/89‑1                                                       CTCACCCCGCTGTGCCGCCTCTATCCGCTTCCTGTTCGTCAGGCCAGCATTTTGCCTCGGGCTTCCTTCAGATTCGCGGTCACCCGCGA                                                                                                                                                       >  1:586632/1‑89                                                          ACCCCGCTGTGCCGCCTCTATCCGCTTCCTGTTCGTCAGGCCAGCATTTTGCCTCGGGCTTCCTTCAGATTCGCGGTCACCCGCGAAT                                                                                                                                                     <  1:413014/88‑1                                                          ACCCCGCTGTGCCGCCTCTATCCGCTTCCTGTTCGTCAGGCCAGCATTTTGCCTCGGGCTTCCTTCAGATTCGCGGTCACCCGCGAAT                                                                                                                                                     >  2:413014/1‑88                                                                                                                                          CCGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTGGCCTGACGAACAGGAAGCGGATAGAGGCGGCACAGCGGGGTGAGGTGGCACAAATCGCCAAAGCCCAATACTTGCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGA       <  2:127537/150‑1                                                                                                                                           CGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTGGCCTGACGAACAGGAAGCGGATAGAGGCGGCACAGCGGGGTGAGGTGGCACAAATCGCCAAAGCCCAATACTTGCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAA      >  1:397663/1‑150                                                                                                                                           CGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTGGCCTGACGAACAGGAAGCGGATAGAGGCGGCACAGCGGGGTGAGGTGGCACAAATCGCCAAAGCCCAATACTTGCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAA      >  2:101776/1‑150                                                                                                                                           CGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTGGCCTGACGAACAGGAAGCGGATAGAGGCGGCACAGCGGGGTGAGGTGGCACAAATCGCCAAAGCCCAATACTTGCA                                              >  1:470249/1‑110                                                                                                                                           CGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTGGCCTGACGAACAGGAAGCGGATAGAGGCGGCACAGCGGGGTGAGGTGGCACAAATCGCCAAAGCCCAATACTTGCA                                              <  2:470249/110‑1                                                                                                                                           CGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTGGCCTGACGAACAGGAAGC                                                                                                        <  2:638997/52‑1                                                                                                                                           CGCGAATCTGAAGGAAGCCCGAGGCAAAATGCTGGCCTGACGAACAGGAAGC                                                                                                        >  1:638997/1‑52                                                                                                                                            cCGAATCTGAAGGAAGCCCGAGGCAAAATGCTGGCCTGACGAACAGGAATCGGATAGAGGCGGCACAGCGGGGTTAGGTGGCACAAATCGCCAAATCCCAATACTTGCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAG     <  1:315815/149‑1                                                                                                                                            GCGAATCTGAAGGAAGCCCGAGGCAAAATGCTGGCCTGACGAACAGGAAGCGGATAGAGGCGGCACAGCGGGGTGAGGTGGCACAAATCGCCAAAGCCCAATACTTGCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAG     <  2:238895/150‑1                                                                                                                                            GCGAATCTGAAGGAAGCCCGAGGCAAAATGCTGGCCTGACGAACAGGAAGCGGATAGAGGCGGCACAGCGGGGTGAGGTGGCACAAATCGCCAAAGCCCAATACTTGCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAG     >  1:680681/1‑150                                                                                                                                            GCGAATCTGAAGGAAGCCCGAGGCAAAATGCTGGCCTGACGAACAGGAAGCGGATAGAGGCGGCACAGCGGG                                                                                   >  2:171076/1‑72                                                                                                                                            GCGAATCTGAAGGAAGCCCGAGGCAAAATGCTGGCCTGACGAACAGGAAGCGGATAGAGGCGGCACAGCGGG                                                                                   <  1:171076/72‑1                                                                                                                                               AATCTGAAGGAAGCCCGAGGCAAAATGCTGGCCTGACGAACAGGAAGCGGATAGAGGCGGCACAGCGGGGTGAGGTGGCACAAATCGCCAAAGCCCAATACTTGCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTC  <  1:588030/150‑1                                                                                                                                                                                                                                                                                                      GGATCTACGTCACAGCGTTCCGTGCAAGTATTGGGCTTTGGCGATTTGTGCCACCTCACCCCGCTGTGCCGCCTCTATCCGCTTCCTGTTCGTCAGGCCAGCATTTTGCCTCGGGCTTCCTTCAGATTCGCGGTCACCCGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/741744‑741602 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgcgaATCTGAAGGAAGCCCGAGGCAAAATGCTGGCCTGACGAACAGGAAGCGGATAGAGGCGGCACAGCGGGGTGAGGTGGCACAAATCGCCAAAGCCCAATACTTGCACGGAACGCTGTGACGTAGATCCGACAGGCATAAGCAGGAAGGTC  >  NC_002947/741618‑741766

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.