New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1296580 =	NA (NA)	9 (0.310)	8/248	2.3	NA	intergenic (‑327/‑239)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase
	?	NC_002947	1296616 =	NA (NA)					intergenic (‑363/‑203)	nhaA‑I/PP_1133	Na(+)/H(+) antiporter NhaA/transposase

TCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1296737‑1296580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccttttGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGT  >  NC_002947/1296616‑1296764                                                                                                                                                                                                                                                                                                                     TCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCACGAGTCGGCTGGCCCTACCGGGCCAAC                                                                                                                                                               <  1:109498/150‑1 TCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAAC                                                                                                                                                               >  2:65042/1‑150  CAGCTGAGGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACC                                                                                                                                                              <  1:321488/150‑1    GCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGC                                                                                                                                                            >  2:116341/1‑150    GCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGC                                                                                                                                                            <  1:535869/150‑1    GCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTACTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGC                                                                                                                                                            <  1:156521/150‑1     CTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCC                                                                                                                                                           <  2:198100/150‑1        ATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCCGGCCCTACCGGGCCAACCGCCTTT                                                                                                                                                        >  1:123567/1‑150              ACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAG‑AAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTG                                                                                                                                                 <  1:230329/150‑1                    ACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTTTGTTAGG                                                                                                                                            <  2:533390/150‑1                           GCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACC                                                                                                                                                              >  2:472187/1‑125                           GCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACC                                                                                                                                                              <  1:472187/125‑1                             CGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT                                                                                                                                                       >  1:84523/1‑130                             CGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT                                                                                                                                                       <  2:84523/130‑1                                               TCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTT                                                                                                                                                   <  2:620378/116‑1                                               TCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGTTGGCCCGGTAGGGCCAGCCGCCTTTTGCTT                                                                                                                                                   >  1:620378/1‑116                                                                  GACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGC                                                                                                                                                            <  1:689880/88‑1                                                                  GACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGC                                                                                                                                                            >  2:689880/1‑88                                                                     ACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACC                                                                                                                                                              <  2:93719/83‑1                                                                     ACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACC                                                                                                                                                              >  1:93719/1‑83                                                                                    CTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACC                                                                                                                                                              <  1:791090/68‑1                                                                                    CTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACC                                                                                                                                                              >  2:791090/1‑68                                                                                                                                GCGGCTGGCCCTACCGGGCCAACCGCCTTTTCTTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGC                                >  1:458488/1‑150                                                                                                                                  GGCTGGCGCTACCGGGCCAACCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCAAGGTATCGGCGTGAAGTCTCTGTCTGGAACAGCTG                              >  1:113007/1‑150                                                                                                                                  GGCTGGCCCTACCGGGCCAACCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTA                                         >  1:550182/1‑139                                                                                                                                  GGCTGGCCCTACCGGGCCAACCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTA                                         <  2:550182/139‑1                                                                                                                                   GCTGGCCCTACCGGGCCAACCGCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGA                             >  2:798743/1‑150                                                                                                                                                        GCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGTACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGA        <  2:156521/150‑1                                                                                                                                                        GCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGA        <  2:186201/150‑1                                                                                                                                                        GCCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGACATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCACACGGTATCCGCGTGCAGCCCCTGTCGGCATCAGCTGATTCAGCTGTGACCACGTATGA        <  1:197930/150‑1                                                                                                                                                         CCTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAG       >  2:656916/1‑150                                                                                                                                                          tttgTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGCGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGA      <  1:172402/146‑1                                                                                                                                                          CTTTTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGA      <  1:777147/150‑1                                                                                                                                                             TTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAG   <  1:533390/150‑1                                                                                                                                                             TTGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAG   <  1:147493/150‑1                                                                                                                                                              TGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGT  <  2:591187/150‑1                                                                                                                                                                                                                                                                                                                     TCAGCTGATGCCTACAGGGACTTCACGCCGATACCGTGCGGATCACTCTCCTACGCGGGTGTGCAGACACACACCAGTGCTGGCTACGATCTCTGTCCCGCGCACACGAACCCTAACAAAGCAAAAGGCGGCTGGCCCTACCGGGCCAACCGCCTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_002947/1296737‑1296580 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccgccttttGCTTTGTTAGGGTTCGTGTGCGCGGGACAGAGATCGTAGCCAGCACTGGTGTGTGTCTGCACACCCGCGTAGGAGAGTGATCCGCACGGTATCGGCGTGAAGTCCCTGTAGGCATCAGCTGATTCAGCTGTGACCACGTATGAGAGAGT  >  NC_002947/1296616‑1296764

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.