| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 5903827 = | 23 (0.730) | 6 (0.220) | 5/234 | 3.0 | 23.0% | intergenic (+27/+80) | PP_5176/spuH | hypothetical protein/spermidine/putrescine ABC transporter permease |
| ? | NC_002947 | 5903887 = | 20 (0.720) | intergenic (+87/+20) | PP_5176/spuH | hypothetical protein/spermidine/putrescine ABC transporter permease | |||||
GGCGATCGAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5903985‑5903827‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTA > NC_002947/5903887‑5904032 GGCGATCGAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTG > 1:481054/1‑150GGCGATCGAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTG > 2:615118/1‑150 GCGATCGAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGG < 2:467487/150‑1 GATCGAAGGGGGTGCTGCAGCCAACGCTTCGCAGCCGCCCCTCTAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCCCAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGA < 1:610623/150‑1 GAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGG < 2:785815/150‑1 GAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGG < 2:481485/150‑1 AAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGG > 2:281307/1‑150 CAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTG > 2:554303/1‑116 CAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTG < 1:554303/116‑1 CCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCG < 1:718821/71‑1 CCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCG > 2:718821/1‑71 CCTTTCGCGGACCTGTCCGCTGCCACAGGGACCTCACAGCCTTCAGGGCTGTGGTGAGCCCTGTGGGAGCGGGCATGCCCGCGAAGGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGG > 2:33872/1‑150 CCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGG > 2:192149/1‑105 CCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGG < 1:192149/105‑1 tCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGC < 1:336770/149‑1 ccCAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTNGACNCNCAGATACGGAGCGTTGGCTGCAGCACCCTCTTCGATCGCC > 2:191793/3‑150 ACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGAGGGCGTGCCCGGGACAGGCACAGGTCAGGCGGACGCAGCCACCTGCGGCGGGCGCTGGGCTTGCGGCTGCGAAGCGTTGGCTGCGGCATACTCTTCGATCGtca > 2:336770/1‑147 TGGGAGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGATTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCAGCCgccaggc > 2:228907/1‑143 AGCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAA < 2:725115/150‑1 GCGGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAG < 2:140612/150‑1 GGGCGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTA > 2:699937/1‑150 GGCGATCGAAGAGGGTGCTGCAGCCAACGCTTCGCAGCCGCAGGTCAAGCGCCCGGCGCAGGTGGCTGCGTCGGCCTGACCTGGCCCTTTCGCGGGCACGCCCGCTCCCACAGGGACCTCACAGCCTTCAGGGTTGTGGTGAGCCCTGTGGGAGCGGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002947/5903985‑5903827‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ccctgtgggagcgggcGTGCCCGCGAAAGGGCCAGGTCAGGCCGACGCAGCCACCTGCGCCGGGCGCTTGACCTGCGGCTGCGAAGCGTTGGCTGCAGCACCCTCTTCGATCGCCTGCTGAATCGCCTTGCGACGACGCTCTTCGGCCTGGCGGCTGAAGTA > NC_002947/5903887‑5904032 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |