New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	198337 =	39 (1.230)	8 (0.260)	8/254	2.3	19.9%	coding (3843/26049 nt)	PP_0168	putative surface adhesion protein
	?	NC_002947	200330 =	27 (0.890)					coding (5836/26049 nt)	PP_0168	putative surface adhesion protein
Rejected: Frequency below/above cutoff threshold.

AAGACCTCGGTTCAGGGCGATGACGTCTATCTTGATGCAGGCTCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCA  >  NC_002947/198188‑198484                                                                                                                                                      |                                                                                                                                                     gccgaaccggtggtgctgttggctgccacgacgacggtggtgccgtcggtcagcttgaagtacagctccgagtggttgttgatcggcagaccgtctttgttggtcagggtgatggtgaaggtaatcccacctactccggtctccgacggg                                                                                                                                                      <  1:139856‑M1/1‑1 (MQ=255)   gACCTCGGTTCAGGGCGATGACGTCTATCTTGATGCAGGCTCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAgtggt                                                                                                                                                    >  2:725470/1‑150 (MQ=255)    aCCTCGGTTCAGGGCGATGACGTCTATCTTGATGCAGGCTCCATCACGCTCAGTCCTGCCTGCGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAgtggtg                                                                                                                                                   <  1:611125/150‑1 (MQ=255)      cTCGGTTCAGGGCGATGACGTCTATCTTGATGCAGGCTCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGc                                                                                                                                                 >  1:909/1‑150 (MQ=255)                  cGATGACGTCTATCTTGATGCAGGCTCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑c                                                                                                                                    <  2:677919/150‑1 (MQ=255)                     tGACGTCTATCTTGATGCAGGCTCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCAc                                                                                                                                 <  1:725470/150‑1 (MQ=255)                     ggctgccacgacgacggtggtgccgtcggtcagcttgaagtacagctccgagtggttgttgatcggcagaccgtctttgttggtcagggtgatggtgtaggtgatctcaccgccttcggtcaccgaaggGGt                                                                                                                                                    <  2:37166‑M1/3‑1 (MQ=255)                     ggctgccacgacgacggtggtgccgtcggtcagcttgaagtacagctccgagtggttgttgatcggcagaccgtctttgttggtcagggtgatggtgtaggtgatctcaccgccttcggtcaccgaaggGGt                                                                                                                                                    >  1:37166‑M1/130‑132 (MQ=255)                              tCTTGATGCAGGCTCCATCACGCTCAGTGATACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTCGGAGGCACGGCTACCGTTGAGATCTCGGACACTATCAGTGAATTGGTGGCAAACCTGACTG‑CAACCCCTTCTGt                                                                                                                        >  1:301138/1‑150 (MQ=255)                                ttGATGCAGGCTCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGtca                                                                                                                      >  2:159256/1‑148 (MQ=255)                                 tGATGCAGGCTCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGAc                                                                                                                     <  2:909/150‑1 (MQ=255)                                     gCAGGCTCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCACACTGACTG‑CCACCCCTTCGGTGACCGaa                                                                                                                 <  1:191979/150‑1 (MQ=255)                                        ggCTCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTCACCGAAggg                                                                                                              <  1:159256/150‑2 (MQ=255)                                         gCTCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAACTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGAAACTATCAGTGCAGTGGTGACCACACTAACTG‑CCAACCCTTCGGCGACCGAAGGCg                                                                                                             >  2:156448/1‑150 (MQ=255)                                              aTCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑c                                                                                                                                    <  1:443534/122‑1 (MQ=255)                                              aTCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑c                                                                                                                                    >  2:443534/1‑122 (MQ=255)                                                     tCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCt                                                                                                 >  2:118742/1‑150 (MQ=255)                                                         tgtTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACCCTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTacac                                                                                             >  1:58807/1‑150 (MQ=255)                                                                   tccgagtggttgttgatcggcagaccgtctttgttggtcagggtgatggtgtaggtgatctcaccgccttcggtcaccgaagtGGTGGCCAAGCTGACTG‑CCACCCCTTc                                                                                                                           <  1:639163‑M1/27‑1 (MQ=255)                                                                   tccgagtggttgttgatcggcagaccgtctttgttggtcagggtgatggtgtaggtgatctcaccgccttcggtcaccgaagtGGTGGCCAAGCTGACTG‑CCACCCCTTc                                                                                                                           >  2:639163‑M1/84‑110 (MQ=255)                                                                       cAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTa                                                                                                <  2:651439/133‑1 (MQ=255)                                                                       cAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTa                                                                                                >  1:651439/1‑133 (MQ=255)                                                                             cGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACATTATCAGTGAGGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAg                                                                         >  1:440454/1‑150 (MQ=255)                                                                                 tGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACgg                                                                     >  2:35638/1‑150 (MQ=255)                                                                                        ttCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCg                                                              >  1:314249/1‑150 (MQ=255)                                                                                             gaAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGGCGGTCTGCCGATCaa                                                         >  2:559387/1‑150 (MQ=255)                                                                                                gCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATaa                                                      >  1:684785/1‑150 (MQ=255)                                                                                                gCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATaa                                                      <  1:118742/150‑1 (MQ=255)                                                                                                           gggtgatggtgtaggtgatctcaccgccttcggtcaccgaaggGGTGGCCAAGCTGACTG‑CCACCCCTTCGGTGACCGaa                                                                                                                 <  2:478715‑M1/37‑1 (MQ=255)                                                                                                           gggtgatggtgtaggtgatctcaccgccttcggtcaccgaaggGGTGGCCAAGCTGACTG‑CCACCCCTTCGGTGACCGaa                                                                                                                 >  1:478715‑M1/44‑80 (MQ=255)                                                                                                             ggCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTg                                         <  2:684785/150‑1 (MQ=255)                                                                                                                ccGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTAc                                      >  2:736427/1‑150 (MQ=255)                                                                                                                        ggtgatctcaccgccttcggtcaccgaaggGGTGGC‑AGTCAGCTTGGCCACCACTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTc                                                                   >  1:525795‑M1/31‑113 (MQ=255)                                                                                                                        ggtgatctcaccgccttcggtcaccgaaggGGTGGC‑AGTCAGCTTGGCCACCACTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTc                                                                   <  2:525795‑M1/83‑1 (MQ=255)                                                                                                                           tGAGATCTCCGACACGAGCAGTGAAGTGGTGGCCCAACTGACTG‑CCCCCCCTTCCGTGACCGAAGGCCGTGAGATCACCTACACCATCCCCCTGACCCACCAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTCAc                           <  2:301138/150‑1 (MQ=14)                                                                                                                           gatctcaccgccttcggtcaccgaaggGGTGGCCAAGCTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACg                                                                      <  1:479612‑M1/80‑1 (MQ=255)                                                                                                                           gatctcaccgccttcggtcaccgaaggGGTGGCCAAGCTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACg                                                                      >  2:479612‑M1/28‑107 (MQ=255)                                                                                                                               aTCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGAt                       >  1:361296/1‑150 (MQ=255)                                                                                                                                tctcGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATg                      <  1:159553/150‑1 (MQ=255)                                                                                                                                 ctcGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATgg                     <  1:736427/150‑1 (MQ=255)                                                                                                                                  tcGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGc                    >  2:579539/1‑150 (MQ=255)                                                                                                                                   cGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCa                   >  1:764456/1‑150 (MQ=255)                                                                                                                                    ggACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCac                  >  2:399629/1‑150 (MQ=255)                                                                                                                                        acTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCactact              <  2:58807/150‑1 (MQ=255)                                                                                                                                          tATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTgt            >  2:306597/1‑150 (MQ=255)                                                                                                                                           aTCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTgtc           <  2:407510/150‑1 (MQ=255)                                                                                                                                           aTCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGCGAGATCACCTACACCATCACGCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTgtc           <  1:559387/150‑1 (MQ=255)                                                                                                                                                tGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTcgtcgt      <  2:314249/150‑1 (MQ=40)                                                                                                                                                    gtggtgGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTTTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCa  <  2:764456/150‑1 (MQ=37)                                                                                                                                                    gtggtgGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCa  <  1:399629/150‑1 (MQ=38)                                                                                                                                                      |                                                                                                                                                     AAGACCTCGGTTCAGGGCGATGACGTCTATCTTGATGCAGGCTCCATCACGCTCAGTGTTACCGACGCTACAGTTCCGGGTGCCACCTTCGAGAAGCTGGCCTTGGGTGGCCCGGCTACCGTTGAGATCTCGGACACTATCAGTGAAGTGGTGGCCAAACTGACTG‑CCACCCCTTCGGTGACCGAAGGCGGTGAGATCACCTACACCATCACCCTGACCAACAAAGACGGTCTGCCGATCAATAACCACTCGGAGCTGTACTTCAAGCTGACCGATGGCACTACTGTCGTCGTGGCA  >  NC_002947/198188‑198484

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.