| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 445088 | 26 (0.820) | 9 (0.360) | 7/212 | 2.1 | 27.8% | intergenic (+58/‑230) | PP_0367/PP_0368 | hypothetical protein/acyl‑CoA dehydrogenase |
| ? | NC_002947 | = 445127 | 26 (1.030) | intergenic (+97/‑191) | PP_0367/PP_0368 | hypothetical protein/acyl‑CoA dehydrogenase | |||||
TGGGCAAGACCGAAGTCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTA > NC_002947/444945‑445236 | tgcgCAAGACCGAACTCGGGCTCGGCGCATACGTCGTCAAGGCATCCGACGCAAGGCTTGGACTGATCATCGACACCTACTCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTc < 2:284242/147‑1 (MQ=255) cAAGACCGAAGTCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGAt < 2:509830/150‑1 (MQ=255) cAAGACCGAAGTCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCAATATTTCATCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGAt < 1:744930/150‑1 (MQ=255) aaGACCGAAGTCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATc > 1:252443/1‑150 (MQ=255) tCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaatt < 2:17517‑M1/150‑22 (MQ=255) aGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGGTTAGACAACGAtgtt < 2:436359/150‑1 (MQ=255) tCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGacaa < 2:242486/140‑1 (MQ=255) tCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGacaa > 1:242486/1‑140 (MQ=255) gtcAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcatt > 2:713206‑M1/1‑109 (MQ=255) aGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcg < 1:604741‑M1/150‑46 (MQ=255) ggCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgg < 2:102757‑M1/150‑47 (MQ=255) ggCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgg < 1:713206‑M1/150‑47 (MQ=255) ggCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgg > 1:76771‑M2/1‑143 (MQ=255) aTCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggca > 2:74476‑M2/1‑140 (MQ=255) acgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCgg < 1:388115/130‑1 (MQ=255) acgaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCgg > 2:388115/1‑130 (MQ=255) gaAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgc > 2:438780‑M2/1‑133 (MQ=255) gCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcat > 1:114988‑M1/1‑84 (MQ=255) gCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcat < 2:114988‑M1/124‑41 (MQ=255) gCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaagg > 1:477402‑M2/1‑123 (MQ=255) cGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgg > 1:40106‑M1/1‑82 (MQ=255) cGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgg < 2:40106‑M1/128‑47 (MQ=255) atcGACACCTACGCCTGAATACTTTCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCCAGAAGGCGTCCGCACACACACAAATTTTCGCTGATCGGTCGTCTTTGGGGGGAAGCCCGCACCTACAAGGGGTTGtgg > 1:54152/1‑150 (MQ=255) gACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGtggcat > 1:436877/1‑150 (MQ=255) gACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGtggcat < 2:252443/150‑1 (MQ=255) gACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGtggcat < 2:436877/150‑1 (MQ=255) cacCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGtggcatgg > 2:330291/1‑150 (MQ=255) ccTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaa > 1:52469‑M2/1‑108 (MQ=255) ccTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaa < 2:52469‑M2/133‑26 (MQ=255) cTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATc > 2:439300/1‑79 (MQ=255) cTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATc < 1:439300/79‑1 (MQ=255) cTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTggcatggcat < 1:330291/150‑1 (MQ=255) tGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaagg < 1:521352‑M2/127‑28 (MQ=255) tGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaagg > 2:521352‑M2/1‑100 (MQ=255) ttGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCAt > 1:69774/1‑150 (MQ=255) aTCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGCCTGCTTTGCAACTTTTCGt < 2:415174/150‑1 (MQ=255) cccTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGtt < 2:606098/113‑1 (MQ=255) cccTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGtt > 1:606098/1‑113 (MQ=255) cctTGTAGGAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggc > 1:477402‑M1/1‑27 (MQ=255) cctTGTAGGAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattca > 2:521352‑M1/1‑27 (MQ=255) cctTGTAGGAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattca < 1:521352‑M1/127‑101 (MQ=255) cctTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttc > 2:181134‑M2/1‑66 (MQ=255) cctTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttc < 1:181134‑M2/69‑4 (MQ=255) cctTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgt < 2:313781/99‑1 (MQ=255) cctTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTtgt > 1:313781/1‑99 (MQ=255) ttGTAGGAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtagg > 1:52469‑M1/1‑25 (MQ=255) ttGTAGGAGCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtagg < 2:52469‑M1/133‑109 (MQ=255) gTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCa > 1:693492/1‑139 (MQ=255) gTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCa < 2:693492/139‑1 (MQ=255) gCGGGCTTGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttc > 2:438780‑M1/1‑17 (MQ=255) tGCCCGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggat > 2:74476‑M1/1‑10 (MQ=255) ccGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgcc > 1:76771‑M1/1‑7 (MQ=255) ccGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcg < 2:174100‑M1/52‑46 (MQ=255) ccGCGAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcg > 1:174100‑M1/1‑7 (MQ=255) ccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgcc < 2:102757‑M2/150‑105 (MQ=255) ccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgcc < 1:713206‑M2/150‑105 (MQ=255) ccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccg < 2:40106‑M2/128‑83 (MQ=255) ccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccg > 1:40106‑M2/1‑46 (MQ=255) ccGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGGTTGTGGCATGGCATGAGTTATTTGCCATTTTTCGTGCAGTAAATAGAACCATAGTCCATCCTTAACAGAAAGCTg > 2:682145/1‑150 (MQ=255) cgcgAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgcct < 1:604741‑M2/150‑106 (MQ=255) cgcgAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgg < 2:174100‑M2/52‑8 (MQ=255) cgcgAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgg > 1:174100‑M2/1‑45 (MQ=255) gAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaagg > 2:181134‑M1/1‑3 (MQ=255) gAAgaggcccgaccagacaaaattgttgtctgatcggacgcattcgcgggcaagcccgctcctacaagg < 1:181134‑M1/69‑67 (MQ=255) aaTGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggccaagcatttcgtcggatgccttgac > 2:713206‑M2/1‑41 (MQ=255) aTGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggc < 2:114988‑M2/124‑85 (MQ=255) aTGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCttcgcgggcaagcccgctcctacaaggcaggcgctgaaataggggatgacgcaagtattcaggcgtaggtgtcgatgatccggc > 1:114988‑M2/1‑40 (MQ=255) | TGGGCAAGACCGAAGTCGAGCTCGGCGCAAAGGTCGTCAAGGCATCCGACGAAATGCTTGGCCGGATCATCGACACCTACGCCTGAATACTTGCGTCATCCCCTATTTCAGCGCCTGCCTTGTAGGAGCGGGCTTGCCCGCGAATGCGTCCGATCAGACAACAATTTTGTCTGGTCGGGCCTCTTCGCGGGCAAGCCCGCTCCTACAAGGGTTTGTGGCATGGCATGACTGATTTGCCATTTTTCGTGGCGTAAATGGCACCATAGTCCATCCTTGACAGAAAGCTGAGCTA > NC_002947/444945‑445236 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |