| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | 1499443 = | 39 (1.060) | 8 (0.260) | 7/226 | 2.7 | 26.5% | intergenic (+13/‑153) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| ? | NC_002947 | 1499526 = | 12 (0.390) | intergenic (+96/‑70) | trpS/zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein | |||||
TCCGCATCGAAGGCCTGAGCTTCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCT > NC_002947/1499294‑1499587 | tCCGCATCGAAGGCCTGAGCTTCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAAAGAAGACTTCGCACCACAGCAGGACTGAGGCTGCCAAACgg > 2:665219/1‑150 (MQ=255)gcaccgcagtttcctgcgccgcgtcatggaagaagtcgggacgtttcagatctgcttgatagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctg < 2:113934‑M1/1‑1 (MQ=255) caccgcagtttcctgcgccgcgtcatggaagcagtcgggacgtttccgttctccttgatagcgttctaagggagatatgtttcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctgt > 1:204517‑M1/149‑150 (MQ=255) cGCATCGAAGGCCTGAGCTTCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTg < 2:543638/150‑1 (MQ=255) accgcagtttcctgcgccgcgtcatggaagaagtcgggacgtttcagatctgcttgatagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctgtg > 2:375477‑M1/148‑150 (MQ=255) gCATCGAAGGCCTGAGCTTCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTgg > 2:652361/1‑150 (MQ=255) aTCGAAGGCCTGAGCTTCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGa > 2:280182/1‑150 (MQ=255) aaGGCCTGAGCTTCGGCCTGTGGCCCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCgg > 1:182939/1‑150 (MQ=255) ccTGAGCTTCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGcac < 1:665219/150‑3 (MQ=255) ccTGAGCTTCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGt < 1:280182/150‑1 (MQ=255) tCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCACGCCcgctc < 1:217951/150‑3 (MQ=255) tCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCACGCCcgctcc < 1:851334/139‑4 (MQ=255) tCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCACGCCcgctcc > 2:851334/1‑136 (MQ=255) cAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCcgcg > 1:530768/1‑150 (MQ=255) cGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCAt < 1:68559/150‑1 (MQ=255) gtttcagatctgcttgatagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGc < 2:691617‑M1/12‑1 (MQ=255) gtttcagatctgcttgatagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGc > 1:691617‑M1/108‑119 (MQ=255) ttGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCgg < 1:623462/150‑1 (MQ=255) tGCCGGCGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGACGCCTTGGAACCACAGCAGGACTGAGGCTGCCACACGGTGGGAGCGGGCCTGCCTCCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGc < 2:557054/150‑1 (MQ=255) tctgcttgatagcgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAACACCGGCGCCGCGGTGCATGGCACCGGc < 1:93717‑M1/51‑1 (MQ=255) gggCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCg < 1:642526/150‑1 (MQ=255) gCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGgt > 1:349079/1‑150 (MQ=255) cgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGt > 1:723361‑M1/88‑101 (MQ=255) cgttctaagggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGt < 2:723361‑M1/14‑1 (MQ=255) tctagggagtcatgattcgttagcgaggcaacaaaacatgggacgtcgcactagctataagccctcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACCGGCGCCGAGGTGCATGGCACCGTCTTTGCCGTTGTTCGCgg > 2:650138‑M1/84‑150 (MQ=255) tCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTAGCgg > 2:201760/1‑150 (MQ=255) agggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCgg < 2:182150‑M1/67‑1 (MQ=255) agggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCgg > 1:182150‑M1/81‑147 (MQ=255) gggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAACACCGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCa > 2:93717‑M1/80‑150 (MQ=255) gggagtcatgattcgttagcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgcgggaga < 1:650138‑M1/71‑4 (MQ=255) aaCGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACg > 2:79556/1‑150 (MQ=255) tGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGc > 2:490609/1‑150 (MQ=255) aGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGc > 2:767635/1‑109 (MQ=255) aGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGc < 1:767635/109‑1 (MQ=255) aGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTcc < 2:349079/150‑1 (MQ=255) gCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTccc < 1:639284/150‑1 (MQ=255) gCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTAGCGGGCGTGCCCGcgaac < 1:201760/150‑5 (MQ=38) cccGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCca > 1:876382/1‑150 (MQ=255) cccGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCca < 2:876382/150‑1 (MQ=255) gATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGTCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGAc < 2:895290/150‑1 (MQ=255) gcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCggg < 2:389782‑M1/11‑1 (MQ=255) gcgaggcaacaaaaaacgggccgtcactgtagcgataggcccgcttaatggcaatcagtctGTGGGAGCggg > 1:389782‑M1/62‑72 (MQ=255) cGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGAt > 1:791155/1‑150 (MQ=255) cTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCggg < 1:774192/150‑1 (MQ=255) cGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATg < 2:533397/82‑1 (MQ=255) cGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATg > 1:533397/1‑82 (MQ=255) ttGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCg < 1:519768/90‑1 (MQ=255) ttGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCg > 2:519768/1‑90 (MQ=255) agcagGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGccc > 2:266744/1‑150 (MQ=255) gcagGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCg > 2:178639/1‑150 (MQ=255) tGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTttg > 1:527150/1‑150 (MQ=255) gCTGCCAAACGGTGGCAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGGGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGc < 1:209560/150‑1 (MQ=255) aaaCGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCt > 1:853681/1‑150 (MQ=255) aaaCGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCt < 1:490609/150‑1 (MQ=255) gtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgc < 1:534969‑M1/65‑1 (MQ=255) gtctGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTcgc > 2:534969‑M1/5‑69 (MQ=255) | TCCGCATCGAAGGCCTGAGCTTCGGCCTGTGGCTCAATGGCGAGCAGGTTGCCGACGGGCCGCAGTTCGACAACGCTGAAGCCCGTGATGCGGCCATTCAGAGCCTGAACGAAGCCTTGGCACCACAGCAGGACTGAGGCTGCCAAACGGTGGGAGCGGGCGTGCCCGCGAA‑ACAGGCGCCGCGGTGCATGGCACCGGCTTTGCCGGTGTTCGCGGGCACGCCCGCTCCCACAGACTGATTGCCATTAAGCGGGCCTATCGCTACAGTGACGGCCCGTTTTTTGTTGCCTCGCT > NC_002947/1499294‑1499587 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |