New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1114875 =	23 (0.630)	10 (0.330)	10/222	1.9	35.2%	intergenic (‑64/+115)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase
	?	NC_002947	1114951 =	18 (0.600)					intergenic (‑140/+39)	rlmF/valS	ribosomal RNA large subunit methyltransferase F/valine‑‑tRNA ligase

GGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAGGCGGGGCCTTGTCGAC  >  NC_002947/1114805‑1115100                                                                                                                                                   |                                                                                                                                                      gggTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGaaa                                                                                                                                                    >  1:41897/1‑150 (MQ=255)  ggTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAg                                                                                                                                                   <  2:532070/150‑1 (MQ=255)          cAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAgg                                                                                                                                                  <  2:292975/143‑1 (MQ=255)          cAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAgg                                                                                                                                                  >  1:292975/1‑143 (MQ=255)            gtgtCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAg                                                                                                                                         >  2:499659/1‑150 (MQ=255)                              gCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGtctctc                                                                                                                       <  2:41897/150‑1 (MQ=255)                                    gCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGCCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGa                                                                                                                 <  1:130607/150‑1 (MQ=255)                                      ttGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGAtt                                                                                                               >  1:272300/1‑150 (MQ=255)                                      ttGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGAtt                                                                                                               >  2:296141/1‑150 (MQ=255)                                           gACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGTTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAgc                                                                                                          >  2:465241/1‑150 (MQ=255)                                                    gctgctGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATc                                                                                                 >  1:103373/1‑150 (MQ=255)                                                      tgctgcGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACa                                                                                                            >  1:809562/1‑137 (MQ=255)                                                      tgctgcGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACa                                                                                                            <  2:809562/137‑1 (MQ=255)                                                                cccTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCGCCAGCGGTCTCTCTAGTGATTACAGCGCTGCAGTCCGCGCAtgctgc                                                                                     >  1:552077/1‑150 (MQ=255)                                                                   ttttGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCg                                                                                  >  1:555521/1‑150 (MQ=255)                                                                              aaggccgctcccacaggacggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGt                                                                                                                            <  1:457575‑M2/28‑1 (MQ=255)                                                                              aaggccgctcccacaggacggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGt                                                                                                                            >  2:457575‑M2/70‑97 (MQ=255)                                                                               AGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGcc                                                                      <  2:538748‑M1/150‑1 (MQ=255)                                                                               AGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGcc                                                                      >  1:125005‑M1/1‑150 (MQ=255)                                                                                 GCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAg                                                                                                                    >  2:264163‑M1/1‑102 (MQ=255)                                                                                 GCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAg                                                                                                                    <  1:264163‑M1/102‑1 (MQ=255)                                                                                 GCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAACAAGTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAg                                                                    <  1:777467‑M1/150‑1 (MQ=255)                                                                                  CCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAgg                                                                   >  2:555521‑M1/1‑150 (MQ=255)                                                                                      tcccacaggacggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcAAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCt                                                               >  2:755712‑M2/62‑150 (MQ=255)                                                                                        ccacaggacggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGt                                                             >  1:381655‑M2/60‑150 (MQ=255)                                                                                         CACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCCCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGtt                                                            <  1:400888‑M1/150‑1 (MQ=255)                                                                                          acaggacggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGa                                                                                                                 >  2:9991‑M2/58‑96 (MQ=255)                                                                                          acaggacggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGa                                                                                                                 <  1:9991‑M2/39‑1 (MQ=255)                                                                                          acaggacggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcAAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTc                                                           <  1:755712‑M2/93‑1 (MQ=255)                                                                                          ACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGgct                                                                                                                                               <  1:884374‑M1/66‑2 (MQ=255)                                                                                          ACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCAAAAGGgct                                                                                                                                               >  2:884374‑M1/1‑65 (MQ=255)                                                                                           CAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCg                                                          >  1:538748‑M1/1‑150 (MQ=255)                                                                                              gacggcgccaaccttcaaggcgccaccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGAc                                                       >  2:541652‑M2/54‑150 (MQ=255)                                                                                              GAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTGCAGCGGCCCCAACGGTCTCTCTAGt                                                                                                                   <  2:111078‑M1/90‑1 (MQ=255)                                                                                              GAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTGCAGCGGCCCCAACGGTCTCTCTAGt                                                                                                                   >  1:111078‑M1/1‑90 (MQ=255)                                                                                              GAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGAc                                                       >  2:272300‑M1/1‑150 (MQ=255)                                                                                                          ttGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTg                                           >  1:773528/1‑150 (MQ=255)                                                                                                          cttcaaggcgccaccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTg                                           <  2:381655‑M2/109‑1 (MQ=255)                                                                                                            gAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGgc                                         <  1:296141/150‑1 (MQ=255)                                                                                                                  cgccaccctcctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTc                                   <  1:541652‑M2/117‑1 (MQ=255)                                                                                                                        cGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGAATCACTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTtctc                             <  1:465241/150‑1 (MQ=255)                                                                                                                            ctgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATc                         >  2:531585‑M2/24‑150 (MQ=255)                                                                                                                             tgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGt                                                             <  1:681078‑M2/91‑1 (MQ=255)                                                                                                                             tgtgggagcggccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGt                                                             >  2:681078‑M2/23‑113 (MQ=255)                                                                                                                                       gccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAGGCgg              <  1:499659‑M2/138‑1 (MQ=255)                                                                                                                                        ccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGt                                                             <  1:672681‑M2/91‑1 (MQ=255)                                                                                                                                        ccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGt                                                             >  2:672681‑M2/12‑102 (MQ=255)                                                                                                                                        ccttgtgtcgcGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAGGCggg             <  1:531585‑M2/139‑1 (MQ=255)                                                                                                                                                   gAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAGGCGGGGCCTTGTcgac  >  1:883881/1‑150 (MQ=255)                                                                                                                                                   |                                                                                                                                                      GGGTCATGGCAGTGTCCAGCCCTATACGAGCGGTGGCTTGAAGACCCTGGGGCTGCTGCGCAGCCCTTTTGCGACACAAGGCCGCTCCCACAGGAGGGTGGCGCCTTGAAGGTTGGCGCCGTCCTGTGGGAGCGGCCTTGTGTCGCGAAAGGGCCGTACAGCGGCCCCAACGGTCTCTCTAGTGATTACAGCGCTGCAATCCGCGCATGCTGCTCGGTGAAGTTGGCCAGGGCCTGTTCGGACTCGGCCAGCTTGGCGCGTTCCTTCTCGATCACCGCAGGCGGGGCCTTGTCGAC  >  NC_002947/1114805‑1115100

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.