Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_002947 5,610,686 C→A A17D (GCC→GAC)  emrE → small multidrug resistance protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,610,6860CA100.0% 163.3 / NA 51A17D (GCC→GAC) emrEsmall multidrug resistance protein
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base A (28/23);  total (28/23)

CTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTCCGGTGGGGATTGCCTACGCCATCTGGTCGGG  >  NC_002947/5610539‑5610830
                                                                                                                                                   |                                                                                                                                                
cTGCTCCGTCATCAACCTATCTCCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCTTGCCATGAATGCCTATACCTACCTCTCCATTGCCATCTGCGCCGAAGTCATCGACa                                                                                                                                                <  1:390749/150‑1 (MQ=255)
          aTCAACCTATCTCCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGAt                                                                                                                                      <  1:546260/150‑1 (MQ=255)
          aTCAACCTATCTCCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGACGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGAt                                                                                                                                      <  2:263131/150‑1 (MQ=255)
             aaCCTATCTCCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGaa                                                                                                                                   >  1:491816/1‑150 (MQ=255)
                  aTCTCCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCgg                                                                                                                              <  2:491816/150‑1 (MQ=255)
                       ccATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCATATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACCCCGCCTTCATCGAGGCGGt                                                                                                                             >  2:197311/1‑146 (MQ=255)
                       ccATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCATATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTTCATCGAGGCGGt                                                                                                                             <  1:197311/146‑1 (MQ=255)
                                    tAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGc                                                                                                            >  2:692746/1‑150 (MQ=255)
                                      aTGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATAGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAACACGCCg                                                                                                          >  2:679876/1‑150 (MQ=255)
                                           tttACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGcc                                                                                                     >  2:179670/1‑150 (MQ=255)
                                                cccATCCAGGCAACGTCTAGAATGCCCACTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCActgc                                                                                                >  2:237868/1‑150 (MQ=255)
                                                 ccATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCActgct                                                                                               >  1:520775/1‑150 (MQ=255)
                                                   aTCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCActgctgc                                                                                             >  2:528189/1‑150 (MQ=255)
                                                   aTCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCActgctgc                                                                                             <  2:212095/150‑1 (MQ=255)
                                                      cAGGCAACGTCTAGAATGCCCACTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGa                                                                                          <  1:237868/150‑1 (MQ=255)
                                                              gTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGAt                                                                                         >  2:717022/1‑143 (MQ=255)
                                                              gTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGAt                                                                                         <  1:717022/143‑1 (MQ=255)
                                                              gTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTCCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGtt                                                                                  <  1:488886/150‑1 (MQ=255)
                                                                 tAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGc                                                                               >  1:566095/1‑150 (MQ=255)
                                                                  aGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCt                                                                              >  1:719067/1‑150 (MQ=255)
                                                                   gAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTa                                                                             >  1:799435/1‑150 (MQ=255)
                                                                    aaTGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTAt                                                                            <  1:646589/150‑1 (MQ=255)
                                                                          cGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCAtt                                                                      <  2:719067/150‑1 (MQ=255)
                                                                            cTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGc                                                                    <  1:644988/150‑1 (MQ=255)
                                                                                gTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTc                                                                >  2:525869/1‑150 (MQ=255)
                                                                                    cGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGGATTGCGTTCTGGa                                                            >  2:156363/1‑150 (MQ=255)
                                                                                     ggaggaTCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTATGGAt                                                           >  1:412091/1‑150 (MQ=255)
                                                                                       aggaTCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGc                                                         <  2:520775/150‑1 (MQ=255)
                                                                                              tGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCgg                                                                                                                              >  1:313850/1‑74 (MQ=255)
                                                                                              tGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCgg                                                                                                                              <  2:313850/74‑1 (MQ=255)
                                                                                              tGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCa                                                                        <  1:116437/128‑1 (MQ=255)
                                                                                              tGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCa                                                                        >  2:116437/1‑128 (MQ=255)
                                                                                              tGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCt                                                  >  2:798128/1‑150 (MQ=255)
                                                                                                 cATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCtggt                                               <  1:562265/150‑1 (MQ=255)
                                                                                                  aTGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCtggtg                                              <  2:567473/150‑1 (MQ=255)
                                                                                                         ccTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCgca                                       >  1:550556/1‑150 (MQ=255)
                                                                                                          cTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCgcag                                      >  1:567440/1‑150 (MQ=255)
                                                                                                          cTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCgcag                                      >  1:22015/1‑150 (MQ=255)
                                                                                                          cTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCgcag                                      >  1:670092/1‑150 (MQ=255)
                                                                                                              acctacctCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCt                                                                                                                    <  1:360970/68‑1 (MQ=255)
                                                                                                              acctacctCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCt                                                                                                                    >  2:360970/1‑68 (MQ=255)
                                                                                                                ctacctCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTcc                                >  1:711002/1‑150 (MQ=255)
                                                                                                                     tCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTCCGGTgg                           <  2:550556/150‑1 (MQ=255)
                                                                                                                     tCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTCCGGTgg                           <  1:434787/150‑1 (MQ=255)
                                                                                                                     tCGCCATTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTCCGGTgg                           >  1:639948/1‑150 (MQ=255)
                                                                                                                          aTTGCCATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTCCGGTGGGGAtt                      >  2:528566/1‑150 (MQ=255)
                                                                                                                               cATCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTCCGGTGGGGATTGCCTa                 <  2:164421/150‑1 (MQ=255)
                                                                                                                                aTCTGCGCCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTCCGGTGGGGATTGCCTAc                <  2:799435/150‑1 (MQ=255)
                                                                                                                                      gcCGAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTCCGGTGGGGATTGCCTACGCCATc          >  1:601802/1‑150 (MQ=255)
                                                                                                                                         gAAGTCATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTCCGGTGGGGATTGCCTACGCCATCTgg       >  2:271083/1‑150 (MQ=255)
                                                                                                                                              cATCGACACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTATGGATGCTGACGCTGGTGGTCCGCAGCATTCCGGTGGGGATTGCCTACGCCATCTGGTCggg  <  2:412091/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                
CTGCTCGGCCATCAACCTATCTCCCATATCGATAGGTAATGACTTTACCCCATCCAGGCAACGTCTAGAATGCCCGCTCAGTAACGGAGGATCCTGCCATGAATGCCTATACCTACCTCGCCATTGCCATCTGCGCCGAAGTCATCGCCACCGCCTCGATGAAGGCGGTGAAAGGCCTGAGCACGCCGTTGCCACTGCTGCTGATGGTGGTTGGCTATGGCATTGCGTTCTGGATGCTGACGCTGGTGGTCCGCAGCATTCCGGTGGGGATTGCCTACGCCATCTGGTCGGG  >  NC_002947/5610539‑5610830

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑