| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 6,429 | Δ1 bp | 6.9% | intergenic (‑47/+42) | trmE ← / ← oxaA | GTPase/membrane protein insertase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 6,429 | 0 | A | . | 6.9% | 268.9 / 14.0 | 87 | intergenic (‑47/+42) | trmE/oxaA | GTPase/membrane protein insertase |
| Reads supporting (aligned to +/- strand): ref base A (42/38); new base . (2/4); total (44/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.28e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.68e-01 | |||||||||||
GCCGGCCTTGGCAGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCACCAGACCGGCAGG > NC_002947/6281‑6578 | gccggccTTGGCAGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCAc > 1:1880246/1‑150 (MQ=255)gccggccTTGGCAGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCAc > 1:1196828/1‑150 (MQ=255) ggccTTGGCAGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑Ag < 1:126363/150‑1 (MQ=255) aGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGttt > 1:1376419/1‑150 (MQ=255) aGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCC‑CT‑AGTGGGGCGttt < 2:1648701/150‑1 (MQ=255) aGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCC‑CT‑AGTGGGGCGttt < 1:422727/150‑1 (MQ=255) gCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGtttt > 2:491065/1‑150 (MQ=255) gagGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAGACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTAt < 2:597605/150‑1 (MQ=255) aCCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACG‑AG‑GGGGCGTTTTTTATTCACAGGCTAGc < 1:567135/150‑1 (MQ=255) tGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTcaca > 2:146047/1‑140 (MQ=255) tGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTcaca < 1:146047/140‑1 (MQ=255) tGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTCTTATTCACAGGCTAGCGTa < 2:1196828/150‑1 (MQ=255) gACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTcac > 2:713176/1‑138 (MQ=255) gACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTcac < 1:713176/138‑1 (MQ=255) gACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTAt < 1:711775/150‑1 (MQ=255) ttCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGcc < 1:1496720/150‑1 (MQ=255) ttCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGcc > 1:947675/1‑150 (MQ=255) tCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGccc < 2:487784/150‑1 (MQ=255) tCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGccc < 2:947675/150‑1 (MQ=255) ccgccatcGCCACGGCCCAGGGCCGGGGCGGTGTGGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCg > 2:1694098/8‑150 (MQ=38) cgccatcGCCACGGCCCAGGGCCGGGGCGGTGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCCCT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAg < 1:1570722/139‑1 (MQ=255) cgccatcGCCACGGCCCAGGGCCGGGGCGGTGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAg > 2:1570722/7‑145 (MQ=255) ccACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGt > 1:1283040/1‑150 (MQ=255) cacaCCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGttt < 1:1103994/120‑1 (MQ=255) cacaCCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGttt > 2:1103994/1‑120 (MQ=255) cacaCCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTc < 1:557778/150‑1 (MQ=255) acacCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCa > 2:1369426/1‑150 (MQ=255) acacCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCa > 2:1691334/1‑150 (MQ=255) acCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAag > 1:1154729/1‑150 (MQ=255) ccGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAagc < 1:1369426/150‑1 (MQ=255) cGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAagca > 1:522369/1‑150 (MQ=255) ccccGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAagcagc < 2:1283040/150‑1 (MQ=255) cGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGt < 2:292362/108‑1 (MQ=255) cGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGt > 1:292362/1‑108 (MQ=255) ccTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCtttt > 1:1594550/1‑150 (MQ=255) cTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCttttt > 1:1259962/1‑150 (MQ=255) gCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGt < 2:522369/150‑1 (MQ=255) tGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTg > 1:844041/1‑144 (MQ=255) tGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTg < 2:844041/144‑1 (MQ=255) aTGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCttttt > 1:1772805/1‑137 (MQ=255) aTGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCttttt < 2:1772805/137‑1 (MQ=255) tGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCg > 1:1263496/1‑150 (MQ=255) gcgATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAg < 2:1495589/137‑1 (MQ=255) gcgATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAg > 1:1495589/1‑137 (MQ=255) tttCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTg > 1:1260965/1‑150 (MQ=255) tttCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCC‑CT‑AGTGGGGCGttttt > 1:1931702/1‑81 (MQ=38) tttCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCC‑CT‑AGTGGGGCGttttt < 2:1931702/81‑1 (MQ=38) tCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGAt < 2:1594550/150‑1 (MQ=255) cGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGt > 1:1594148/1‑150 (MQ=255) gCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTAc > 1:1452536/1‑150 (MQ=255) acaGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGtttt < 1:1074166/72‑1 (MQ=255) acaGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGtttt > 2:1074166/1‑72 (MQ=255) caGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCAc < 2:1376419/150‑1 (MQ=255) tCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACtgctgc < 2:1880246/150‑1 (MQ=255) aTGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCttttt > 2:1772784/1‑107 (MQ=255) aTGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCttttt < 1:1772784/107‑1 (MQ=255) aTGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGa > 2:1750290/1‑150 (MQ=255) tCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAagc > 2:1764858/1‑92 (MQ=255) tCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAagc < 1:1764858/92‑1 (MQ=255) tCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGa < 2:1796752/118‑1 (MQ=255) tCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGa > 1:1796752/1‑118 (MQ=255) tCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTAc < 1:1831254/135‑1 (MQ=255) tCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTAc > 2:1831254/1‑135 (MQ=255) aaGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACa < 1:491065/150‑1 (MQ=255) aGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACTAAG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACa < 2:1594148/150‑1 (MQ=255) ccTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGc > 1:587629/1‑150 (MQ=255) tctACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTg < 1:1470584/96‑1 (MQ=255) tctACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTg > 2:1470584/1‑96 (MQ=255) gACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTc < 2:1304287/74‑1 (MQ=255) gACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTc > 1:1304287/1‑74 (MQ=255) aCAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACtgctgc > 1:1123701/1‑129 (MQ=255) aCAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTc < 2:587629/150‑1 (MQ=255) aCAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGCTAGCTGCTTCGATACGGCGAGTGATGTACCACtgctgc < 2:1123701/129‑1 (MQ=255) aCAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAg > 2:28697/1‑150 (MQ=255) aTAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACa > 2:618894/1‑150 (MQ=255) gCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCTGCAGCTTTTCTCGCCTGCGCTTCGATACCGCGAGTGTTGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCa < 1:1691334/150‑1 (MQ=255) gCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAg < 1:1213328/78‑1 (MQ=255) gCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAg > 2:1213328/1‑78 (MQ=255) cAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCAc < 2:1146864/150‑1 (MQ=255) aaaaaCGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTa < 1:1935964/48‑1 (MQ=255) aaaaaCGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTa > 2:1935964/1‑48 (MQ=255) aaaaaCGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCAcc > 2:1765407/1‑150 (MQ=255) aaaaCGCCCC‑CT‑AGTGGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAAccc > 1:1526544/1‑138 (MQ=255) aaaaCGCCCC‑CT‑AGTGGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAAccc < 2:1526544/138‑1 (MQ=255) aaaCGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGc < 1:1185641/89‑1 (MQ=255) aaaCGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGc > 2:1185641/1‑89 (MQ=255) cccACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCACCAGACCGGc > 1:923220/1‑150 (MQ=255) aCT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCACCAGACCGGCAgg > 2:1722775/1‑150 (MQ=255) | GCCGGCCTTGGCAGCCAGAGGGCCGGACAACCTGACAATTCCCACACCGCCCCGGCCCTGGGCCGTGGCGATGGCGGCGATGGTTTCACGCACAGTGTTCATGCTCGAAAGCCTCTACGACAAAAACGACAGATAGCAAAAACGCCCCACT‑AG‑GGGGCGTTTTTTATTCACAGGCTAGCGTATTAGCCCGTCAAGCAGCAGCTTTTTTGGTAGCTGCTTCGATACGGCGAGTGATGTACCACTGCTGCGAAATCGACAGGCAGTTGTTCACAACCCAGTACAGCACCAGACCGGCAGG > NC_002947/6281‑6578 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |