| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,846,339 | Δ1 bp | 5.8% | coding (588/1377 nt) | pfeS‑II → | histidine kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,846,339 | 0 | T | . | 5.8% | 250.2 / 10.4 | 86 | coding (588/1377 nt) | pfeS‑II | histidine kinase |
| Reads supporting (aligned to +/- strand): ref base T (45/36); new base . (3/2); total (48/38) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.90e-01 | |||||||||||
CAGCACCGCTTGCTGTGGCGCATTGTCACCAACGGCATCATCCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACGGTGGCTATGCAGCAGCAGTTGCTGCGCGACCTGTCCCACGAAATGCG > NC_002947/1846199‑1846488 | cAGCACCGCTTGCTGTGGCGCATTGTCACCAACGGCATCATCCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCg < 2:1539856/150‑1 (MQ=255)cAGCACCGCTTGCTGTGGCGCATTGTCACCAACGGCATCATCCCGGGGCTGTTCACATTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCg < 1:1151737/150‑1 (MQ=255) cACCGCTTGCTGTGGCGCATTGTCACCAACGGCATCATCCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATTCCTGGCGGGCCGATCAGCTG‑Tctggt > 2:1656013/1‑146 (MQ=255) cACCGCTTGCTGTGGCGCATTGTCACCAACGGCATCATCCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGcc > 2:733459/1‑150 (MQ=255) cACCGCTTGCTGTGGCGCATTGTCACCAACGGCATCATCCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGAC‑AAGAGCGCAATGTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGcc > 2:1506957/1‑150 (MQ=255) ttGCTGTGGCGCGTTGTCACCGACGGCATCATCCCGGGGCTGTTCACCTTGCTGTTGTGTGTGGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCGTGCGGGCCGATCAGCTG‑TCGGCCCGCCTg < 2:845894/150‑1 (MQ=255) gcATTGTCACCAACGGCATCATCCCGGTGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTC‑TCGGCCCGCCTGGCCTCGcaca > 1:112114/1‑150 (MQ=255) tCACCAACGGCATCATCCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCg > 2:1432277/1‑150 (MQ=255) cACCAACGGCATCATCCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTT‑Tctg > 2:318115/1‑123 (MQ=255) cACCAACGGCATCATCCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCgg < 1:318115/125‑1 (MQ=255) aCCAACGGCATCATCCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGcc > 1:76745/1‑150 (MQ=255) ccAACGGCATCATCCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGccc > 1:890257/1‑150 (MQ=255) aaCGGCATCATCCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCCCCATCGCCCgg > 1:1076365/1‑150 (MQ=255) ggCATCATCCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCAt < 1:15807/150‑1 (MQ=255) catcatCCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGa > 2:772133/1‑150 (MQ=255) atcatcCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGAc < 1:1436465/150‑1 (MQ=255) atcCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGaa > 2:1606026/1‑150 (MQ=255) tcCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAAt > 1:578355/1‑150 (MQ=255) tcCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAAt > 2:888069/1‑150 (MQ=255) cccGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTCCCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATc < 1:1478630/133‑1 (MQ=255) cccGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATc > 2:1478630/1‑133 (MQ=255) cccGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAAtt < 2:998696/150‑1 (MQ=255) cGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTgg < 1:888069/150‑1 (MQ=255) gCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGa > 2:791035/1‑150 (MQ=255) tGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAAc < 1:791035/150‑1 (MQ=255) ttCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTcgc < 1:1047812/115‑1 (MQ=255) ttCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTcgc > 2:1047812/1‑115 (MQ=255) ttCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTg > 2:250541/1‑150 (MQ=255) aCCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGa > 2:1495345/1‑107 (MQ=255) aCCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGa < 1:1495345/107‑1 (MQ=255) cTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGcgcg > 1:569314/1‑150 (MQ=255) cTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGcgcg > 2:1703248/1‑150 (MQ=255) ttGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGt < 1:733459/150‑1 (MQ=255) ttGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGt < 1:1606026/150‑1 (MQ=255) ttgtGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGc > 1:1360958/1‑93 (MQ=255) ttgtGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGc < 2:1360958/93‑1 (MQ=255) ttgtGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCttt < 2:76745/150‑1 (MQ=255) ttgtGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑GCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCttt > 2:1026279/1‑150 (MQ=255) tgtgtgTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTg < 2:1433512/150‑1 (MQ=255) tAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGc < 1:270542/82‑1 (MQ=255) tAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGc > 2:270542/1‑82 (MQ=255) tAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGa > 1:1767053/1‑150 (MQ=255) tAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGa > 2:286438/1‑150 (MQ=255) ggcccTGTACCGCAGGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTTGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGAt < 1:672326/147‑1 (MQ=255) gCCTGTACGGCATGCTGATCGGGCCGCTGAAC‑CAACTTCGCGAGGAGGCCGGTGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATgg > 2:761650/1‑150 (MQ=255) gCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATgg > 2:1333919/1‑150 (MQ=255) cGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAGTGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCgg > 2:1405015/1‑150 (MQ=255) cGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGgcgc > 1:919305/1‑124 (MQ=255) cGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGgcgc < 2:919305/124‑1 (MQ=255) cATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCt < 2:569314/150‑1 (MQ=255) cTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCaa < 1:772133/150‑1 (MQ=255) tCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCa < 2:578355/150‑1 (MQ=255) gTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACg > 2:1409768/1‑150 (MQ=255) gCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGCCCCGGt > 1:289179/1‑150 (MQ=255) c‑cAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATgg < 1:255916/119‑1 (MQ=255) c‑cAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATgg > 2:255916/1‑119 (MQ=255) cAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAAtt > 2:1720184/1‑86 (MQ=255) cAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAAtt < 1:1720184/86‑1 (MQ=255) aaCTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACGGTGGCTATgcagc > 1:290151/1‑150 (MQ=255) aCTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACGGTGGCTATgcagca > 1:531181/1‑150 (MQ=255) tCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACGGTGGCTATgcagcagca < 2:1767053/150‑1 (MQ=255) tCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACGGTGGCTATgcagcagca < 2:890257/150‑1 (MQ=255) gCAGGACAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACGGTGGCTATgcagcagca > 1:1839003/1‑144 (MQ=255) gCAGGACAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACGGTGGCTATgcagcagca < 2:1839003/144‑1 (MQ=255) aGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACg < 1:937755/125‑1 (MQ=255) aGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACg > 2:937755/1‑125 (MQ=255) ggCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACGGTGGCTATGCAGCAGCAGTTGCTgcg > 1:1629945/1‑150 (MQ=255) gCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACGGTGGCTATGCAGCAGCAGTTGCTgcgc > 1:260282/1‑150 (MQ=255) cAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACg > 2:1424718/1‑121 (MQ=255) cAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACg < 1:1424718/121‑1 (MQ=255) cAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACGGTGGCTATGCAGCAGCAGTTGCTGCGCGa > 2:1904362/1‑150 (MQ=255) aaTGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACGGTGGCTATGCAGCAGCAGTTGCTGCGCGAc < 1:250541/150‑1 (MQ=255) aTGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACGGTGGCTATGCAGCAGCAGTTGCTGCGCGAcc < 1:1409768/150‑1 (MQ=255) tccaggCGGGCCGA‑CAGCTGATCGGCCCGCCAGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGAt < 1:1105444/91‑1 (MQ=25) tccaggCGGGCCGA‑CAGCTGATCGGCCCGCCAGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGAt > 2:1105444/5‑95 (MQ=25) ccTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCa > 1:468220/1‑109 (MQ=255) ccTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCa < 2:468220/109‑1 (MQ=255) ccTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACGGTGGCTATGCAGCAGCAGTTGCTGCGCGACCTGt < 1:1333919/150‑1 (MQ=255) cTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACGGTGGCTATGCAGCAGCAGTTGCTGCGCGACCTGTc < 1:1073464/150‑1 (MQ=255) aggCGGGCCGA‑CAGCTGATCGGCCCGCCTGGAATCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACAAGATGGGCGAGCGGCTGCAAGGCACGGTGGCTATGCAGCAGCAGTTGCTGCGAGACCTGTcc > 2:642714/2‑150 (MQ=255) gggCCGA‑CAGCTGATCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGcc > 1:1335544/1‑92 (MQ=39) gggCCGA‑CAGCTGATCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGcc < 2:1335544/92‑1 (MQ=39) ggCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACGGTGGCTATGCAGCAGCAGTTGCTGCGCGACCTGTCCCACGa > 2:499168/1‑150 (MQ=255) gATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACGGTGGCTATGCAGCAGCAGTTGCTGCGCGACCTGTCCCACGAAATg > 2:553958/1‑150 (MQ=255) aTCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGc > 2:728214/1‑96 (MQ=255) aTCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGc < 1:728214/96‑1 (MQ=255) tCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACGGTGGCTATGCAGCAGCAGTTGCTGCGCGACCTGTCCCACGAAATgcg < 1:286438/150‑1 (MQ=255) | CAGCACCGCTTGCTGTGGCGCATTGTCACCAACGGCATCATCCCGGGGCTGTTCACCTTGCTGTTGTGTGTAGGCCTGTACCGCATGCTGATCGTGCCGCTGAAC‑CAACTTCGCGAGCAGGCCAATGCCTGGCGGGCCGATCAGCTG‑TCGGCCCGCCTGGACTCGCGCACCATCGCCCGGCATGACGAATTGGGCGAACTGGCGCGTGCCTTTGACCAGATGGCCGAGCGGCTGCAAGGCACGGTGGCTATGCAGCAGCAGTTGCTGCGCGACCTGTCCCACGAAATGCG > NC_002947/1846199‑1846488 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |