| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 284,569 | Δ1 bp | 5.2% | intergenic (+15/+48) | betT‑II → / ← atsK | choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 284,569 | 0 | C | . | 5.2% | 243.9 / 7.6 | 77 | intergenic (+15/+48) | betT‑II/atsK | choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase |
| Reads supporting (aligned to +/- strand): ref base C (37/35); new base . (2/2); total (40/37) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.64e-01 | |||||||||||
TTACCGGGCGGAGGTGCACCTGAGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCC > NC_002947/284422‑284714 | ttACCGGGCGGAGGTGCACCTGAGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCtcctgtcct < 2:847728/150‑1 (MQ=255) gCGGAGGTGCACCTGAGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCCGTACCTGCACCTGGTCCCCTGACCAAGCTCTCCTGTCCTGGCctct < 2:77012/150‑1 (MQ=255) aGGTGCACCTGAGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGc < 2:1612508/142‑1 (MQ=255) aGGTGCACCTGAGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGc > 1:1612508/1‑142 (MQ=255) gcgCACCTGAGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGGAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCgg < 2:7934/148‑1 (MQ=255) gTGCACCTGAGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCgg > 2:1170298/1‑150 (MQ=255) gTGCACCTGAGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCgg > 1:1389861/1‑150 (MQ=255) ccTGAGCGAAGGCAGACAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGAACAGTAGGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGGTGACCAAGCTCTCCTGTCCTGGCCTATTCGCGGGCTTg > 2:874673/1‑150 (MQ=255) aGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCcg > 2:1307349/1‑150 (MQ=255) gAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGT‑CTGGCCTCTTCGCGGGCAAGCCCGCGaa > 1:1357749/1‑150 (MQ=255) gAAGGCAGCCAGAACTATGACCGGGTGGGCTACAGCAAGGAGGAGACCGTCAACGACATCCTCGAACAGTAAGAGC‑GGAACATGGAGTATCTGAACCTGCTCCGCGGACTCGGCTCTCCTGTACTGGGAGCTTCGCGGGCCGGCCCGCGa > 2:337566/1‑150 (MQ=255) aaGGCAGCCAGAACTATGACCTGGTGGGCTAAAGCAAGGGGCAGATAGGCCATCGCATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGAACAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGaa < 2:1389861/150‑1 (MQ=255) gCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAagag < 2:1940765/150‑1 (MQ=255) gCAGCCAGAACTATGACCTGGTGGGCTACAGCAACGAGCAGATCAGGACCGACATCCTCAAACAGT‑CGATCATTGACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAagag < 1:1304851/150‑1 (MQ=255) ccAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCa < 1:1646039/150‑1 (MQ=255) cAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑g < 1:604922/150‑1 (MQ=255) gAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GAc > 2:346472/1‑150 (MQ=255) tATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGc > 1:846811/1‑150 (MQ=255) tATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGT‑CTGGCCTCTTCGCGGGCAAGCCCGCGAAGAGGCCAGGACAgga < 2:723448/150‑2 (MQ=38) tGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCaa > 2:1527676/1‑150 (MQ=255) aCCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTAACTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAAcc > 2:226246/1‑150 (MQ=255) cTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGc < 1:1527676/150‑1 (MQ=255) cTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCGTGCCCGCGAAGAGGCCA‑GACACGCAACCGc > 2:821348/1‑150 (MQ=255) tggtggGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCt > 1:1226613/1‑150 (MQ=255) gggCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTAACTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGaa < 1:226246/150‑1 (MQ=255) ggCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGaaa < 2:846811/150‑1 (MQ=255) cTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGc > 2:1458591/1‑111 (MQ=255) cTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGc < 1:1458591/111‑1 (MQ=255) cAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATc > 1:1178403/1‑150 (MQ=255) gAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAagag < 2:1184615/115‑1 (MQ=255) gAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAagag > 1:1184615/1‑115 (MQ=255) aGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCaa < 2:1178403/150‑1 (MQ=255) aGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCaa < 2:1921664/150‑1 (MQ=255) aGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGT‑CTGGCCTCTTCGCGGGcaag < 1:1368375/102‑4 (MQ=255) aGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGT‑CTGGCCTCTTCGCGGGcaag > 2:1368375/1‑99 (MQ=255) atcatcAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATg > 2:1801041/1‑150 (MQ=255) atcatcAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATg > 2:791173/1‑150 (MQ=255) tcaACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAgg > 1:298318/1‑130 (MQ=255) tcaACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAgg < 2:298318/130‑1 (MQ=255) tcaACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCg > 2:1327582/1‑150 (MQ=255) caACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGc > 1:1599837/1‑150 (MQ=255) aCGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGccc > 2:1143592/1‑150 (MQ=255) aTCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGc > 1:551370/1‑150 (MQ=255) aTCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGc > 2:655817/1‑150 (MQ=255) cTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATc > 1:31880/1‑150 (MQ=255) cGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCAc > 2:480419/1‑150 (MQ=255) gACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCtt > 1:944988/1‑79 (MQ=255) gACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCtt < 2:944988/79‑1 (MQ=255) aCCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCAccc < 1:1143592/150‑1 (MQ=255) tACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGTCCGGTGCATCACCCGCCgg > 1:537310/1‑150 (MQ=255) tACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCgg > 1:537544/1‑150 (MQ=255) cGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAACTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGtt > 1:1873754/1‑150 (MQ=255) gAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTg < 2:1065361/134‑1 (MQ=255) gAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTg > 1:1065361/1‑134 (MQ=255) gAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTtc > 1:1486905/1‑150 (MQ=255) aTGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTaa < 1:1170298/150‑1 (MQ=255) gCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAatc > 1:97704/1‑150 (MQ=255) cAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAatca < 1:1327582/150‑1 (MQ=255) aCCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCa < 1:655817/150‑1 (MQ=255) aCCTGCACATGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCa < 2:961660/150‑1 (MQ=255) cTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGt > 2:1939198/1‑115 (MQ=255) cTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGt < 1:1939198/115‑1 (MQ=255) cTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCAcc > 1:1225368/1‑150 (MQ=255) cTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCAAGCCCGCGAaga < 1:573917/63‑1 (MQ=25) cTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCAAGCCCGCGAaga > 2:573917/1‑63 (MQ=25) cTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCaaaa > 2:1218206/1‑150 (MQ=255) gTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGc < 2:551370/150‑1 (MQ=255) tCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCt < 1:791173/150‑1 (MQ=255) cccGCTGACCAAGCTCCCCTGTCCTGGCCTCTGCCCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCt < 1:346472/149‑1 (MQ=255) ccGCTGACCAAGCTCTCCTGTCCTCGCCTCTTCGCGGCCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTg < 1:510611/150‑1 (MQ=255) cGCTGACCAAACTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTgg < 2:1873754/150‑1 (MQ=255) gCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTggg > 2:44857/1‑150 (MQ=255) gCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTggg > 1:936164/1‑150 (MQ=255) cTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGt < 2:1226613/150‑1 (MQ=255) aGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGTCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCgg < 2:537310/150‑1 (MQ=255) aGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCgg < 1:44857/150‑1 (MQ=255) aGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCgg < 2:537544/150‑1 (MQ=255) aGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCgg < 2:1599837/150‑1 (MQ=255) tcctgtcctgGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTg < 1:48352/135‑1 (MQ=255) tcctgtcctgGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTg > 2:48352/1‑135 (MQ=255) cctgtcctgGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTcc < 1:1218206/150‑1 (MQ=255) ctgtcctgGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTccc > 1:1379028/1‑150 (MQ=255) tcctgGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACccgccg > 1:186634/1‑97 (MQ=255) tcctgGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATACCCAAGGATGGTCGCCCGGTGCATCACccgccg < 2:186634/97‑1 (MQ=255) | TTACCGGGCGGAGGTGCACCTGAGCGAAGGCAGCCAGAACTATGACCTGGTGGGCTACAGCAAGGAGCAGATCATCAACGACATCCTCGACCAGTACGAGC‑GGCACATGCAGTACCTGCACCTGGTCCGCTGACCAAGCTCTCCTGTCCTGGCCTCTTCGCGGGCTTGCCCGCGAAGAGGCCA‑GACAGGCAACCGCTAGAAAGGTGCATCCCCAAGGATGGTCGCCCGGTGCATCACCCGCCGGTTCGGTCGGTAATCATCCACCGCAAAATGCTGGGTCACGCGGTTGTCCC > NC_002947/284422‑284714 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |