| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 5,458,946 | Δ1 bp | 22.2% | intergenic (+23/‑39) | leuS → / → PP_4795 | leucine‑‑tRNA ligase/lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,458,946 | 0 | T | . | 22.2% | 198.9 / 61.7 | 81 | intergenic (+23/‑39) | leuS/PP_4795 | leucine‑‑tRNA ligase/lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (32/31); new base . (8/10); total (40/41) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.90e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.76e-01 | |||||||||||
CCAGCCGCGAAGAAGTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGCTGAGCGTGAAGGAAATGGACGT > NC_002947/5458799‑5459094 | ccAGCCGCGAAGAAGTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGCAATCGAtg < 2:960336/150‑2 (MQ=255) cAGCCGCGAAGAAGTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGc < 1:215763/150‑1 (MQ=255) gCCGCGAAGAAGTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCgg < 2:642673/150‑1 (MQ=255) ccGCGAAGAAGTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCggg > 1:947040/1‑150 (MQ=255) gcgAAGAAGTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGtt < 1:1342564/150‑2 (MQ=255) cgAAGAAGTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGCAATCGA‑TGCGGGTgg < 1:1740047/150‑1 (MQ=255) gTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGCAATCGA‑TGCGGGTGGGCgtttt < 1:538976/150‑5 (MQ=255) gTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAAc > 1:1529022/1‑150 (MQ=255) gAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAgg > 2:864666/1‑150 (MQ=255) gAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAgg > 2:1459482/1‑150 (MQ=255) gCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCaaa > 1:1898467/1‑150 (MQ=255) ccGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAgg > 1:1512380/1‑139 (MQ=255) ccGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAgg < 2:1512380/139‑1 (MQ=255) ccGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGa < 2:1898467/150‑1 (MQ=255) ccGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGa > 1:743383/1‑150 (MQ=255) cGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAg < 1:1459482/150‑1 (MQ=255) cGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAg < 2:206655/150‑1 (MQ=255) cGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTAGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAg < 1:1581571/150‑1 (MQ=255) gcagcaACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGc > 1:578391/1‑150 (MQ=255) agcaACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAATCGCACACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCTCAAAATGGAGcaa < 2:1529022/150‑1 (MQ=255) gcaACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGCAATCGA‑TGCGGGTgg > 2:1154058/1‑124 (MQ=255) gcaACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGCAATCGA‑TGCGGGTgg < 1:1154058/124‑1 (MQ=255) aaCGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGaa < 2:745029/128‑1 (MQ=255) aaCGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGaa > 1:745029/1‑128 (MQ=255) gagaATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACAt < 2:894288/150‑1 (MQ=255) aaTGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTgg > 1:1745279/1‑116 (MQ=255) aaTGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTgg < 2:1745279/116‑1 (MQ=255) tGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGc > 2:579752/1‑150 (MQ=255) cATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGc < 1:864666/150‑1 (MQ=255) ccTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGCAATCGA‑TGCGGGTgg > 1:1636176/1‑93 (MQ=39) ccTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGCAATCGA‑TGCGGGTgg < 2:1636176/93‑1 (MQ=39) tGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGc < 2:578391/150‑1 (MQ=255) cacccGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTgg > 1:1939896/4‑150 (MQ=255) cATCCGCGAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCaaa < 2:1473857/125‑1 (MQ=255) cATCCGCGAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCaaa > 1:1473857/1‑125 (MQ=255) cATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGCAATCGA‑TGCGGGTGGGCgtttt > 2:1022174/1‑90 (MQ=37) cATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGCAATCGA‑TGCGGGTGGGCgtttt < 1:1022174/94‑5 (MQ=37) cATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTgg > 1:1353409/1‑150 (MQ=255) cATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTgg < 2:947040/150‑1 (MQ=255) aaGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCAt > 2:1057654/1‑150 (MQ=255) ggTCATCGTGTTACCGTGGAAGCTTGTCAACATCGTCGCCAACTGATGAAAACGCCCACCCACCC‑ACCGA‑‑GGGCGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGc < 1:611802/150‑1 (MQ=255) cATCGTGGTACCGGGCAAGCTGGTCAATATCGTCGCCAACTTATGAAAACACCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCTCAAAATGGAGCAACAACATGATCAAACGCAATTCGCTGGTAATCGGCCTGGCGGTCATGCTCa < 2:376475/150‑1 (MQ=255) tCGTGGTACCTGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGCAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAgc < 1:252378/150‑1 (MQ=255) tCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAgc < 2:1939896/150‑1 (MQ=255) gTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAggg < 1:1029715/91‑1 (MQ=255) gTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAggg > 2:1029715/1‑91 (MQ=255) tACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGc < 1:1057654/150‑1 (MQ=255) tACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGc > 1:608742/1‑150 (MQ=255) ccGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCAGCC‑‑CAA‑ACGAATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACCACATGATCGCACACAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCgg > 1:1506029/1‑150 (MQ=255) ggCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGttt > 2:202391/1‑150 (MQ=255) gCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTc > 1:697422/1‑150 (MQ=255) aGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAg < 1:202391/150‑1 (MQ=255) cTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑TGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCt < 1:1457974/129‑1 (MQ=255) cTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑TGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCt > 2:1457974/1‑129 (MQ=255) tGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTg > 1:1279821/1‑150 (MQ=255) tGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTg > 1:376710/1‑150 (MQ=255) gTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTgcg > 1:1457144/1‑150 (MQ=255) tCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTgcgc > 2:445381/1‑150 (MQ=255) tCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATGTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTgcgc > 2:218769/1‑150 (MQ=255) cAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGcgcg < 2:376710/150‑1 (MQ=255) cATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCa > 2:1534541/1‑150 (MQ=255) tcgCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGgc < 2:1457144/150‑1 (MQ=255) atgaAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTgg > 1:652323/1‑96 (MQ=255) atgaAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTgg < 2:652323/96‑1 (MQ=255) atgaAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCGTGCGGTGTCCAGCTGCGCGGCACCGGCGCCCCTGAGc > 2:350083/1‑150 (MQ=255) aaaaCGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCCCGATGTAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGCTGa < 1:1180912/150‑1 (MQ=255) ttccGCCCACC‑‑CGCAATCGA‑TGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGtt < 2:1340233/113‑1 (MQ=39) ttccGCCCACC‑‑CGCAATCGA‑TGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGtt > 1:1340233/4‑116 (MQ=39) aCGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGCTGAGCg < 2:608742/150‑1 (MQ=255) cGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTTATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGCTGAGCGt < 2:1252620/150‑1 (MQ=255) cGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGCTGAGCGt < 1:218769/150‑1 (MQ=255) cccACC‑‑CGCAATCGA‑TGCTGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATg < 1:951642/95‑1 (MQ=255) cccACC‑‑CGCAATCGA‑TGCTGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATg > 2:951642/1‑95 (MQ=255) cccACC‑‑CGCAATCGA‑TGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGCTGAGCGTGa > 2:862284/1‑150 (MQ=255) ccACC‑‑CGCAATCGA‑TGCGGGTGGGCGTAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCCGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGCTGAGCg > 2:458591/1‑146 (MQ=255) ccACC‑‑CGCAATCGA‑TGCGGGTGGGCGTAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCCGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGCTGAGCg < 1:458591/146‑1 (MQ=255) cACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGCTGAGCGTGAAg > 2:147835/1‑150 (MQ=255) cc‑‑cGCAATCGA‑TGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTgg < 1:829253/83‑1 (MQ=39) cc‑‑cGCAATCGA‑TGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTgg > 2:829253/1‑83 (MQ=39) gC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGCTGAGCGTGAAGGAAAt > 1:753116/1‑150 (MQ=255) cGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGCTGAGCGTGAAGGAAATGGAc < 2:1353409/150‑1 (MQ=255) aTTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGCTGAGCGTGAAGGAAATGGACGt > 1:359058/1‑150 (MQ=255) | CCAGCCGCGAAGAAGTCGAAGCCGCTGCCCGCAGCAACGAGAATGTCCTGCGCTTCATCGATGGCCTGACCATCCGCAAGGTCATCGTGGTACCGGGCAAGCTGGTCAACATCGTCGCCAACTGATGAAAACGCCCACC‑‑CGC‑ATCGATTGCGGGTGGGCGGAACAGGCCCAAAAGGGAGCAACAACATGATCAAACGCAATTTGCTGGTAATCGGCCTGGCGGTCATGCTCAGCGCCTGCGGTTTCCAGCTGCGCGGCACCGGCGCCACCGAGCTGAGCGTGAAGGAAATGGACGT > NC_002947/5458799‑5459094 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |