| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 43,461:1 | +A | 8.8% | intergenic (+27/+66) | PP_0040 → / ← cadA‑I | hypothetical protein/cadmium translocating P‑type ATPase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 43,461 | 1 | . | A | 8.8% | 344.8 / 28.6 | 91 | intergenic (+27/+66) | PP_0040/cadA‑I | hypothetical protein/cadmium translocating P‑type ATPase |
| Reads supporting (aligned to +/- strand): ref base . (43/40); new base A (5/3); total (48/43) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.17e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.59e-01 | |||||||||||
AAGTCGGTTTCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCTCATGGATCGCAACAGCGG > NC_002947/43313‑43609 | aaGTCGGTTTCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATc‑g > 1:1614757/1‑150 (MQ=255) aGTCGGTTTCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATc‑gc < 2:1187817/150‑1 (MQ=255) aGTCGGTTTCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGGGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGCAAAGTACGGGACGTCCGCTGATc‑gc > 1:587817/1‑150 (MQ=255) tCGGTTTCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑gcgc > 1:952368/1‑150 (MQ=255) ggTTTCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGC‑GATCAGCGCAc > 1:495147/1‑150 (MQ=255) gTTTCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACg > 2:452799/1‑150 (MQ=255) gTTTCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACg > 1:1437288/1‑150 (MQ=255) tttCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGa < 1:883032/150‑1 (MQ=255) ttCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGAc < 1:452799/150‑1 (MQ=255) cGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGAccc < 1:1703408/150‑1 (MQ=255) tAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCCGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGt < 2:422814/150‑1 (MQ=255) ggTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGCAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTGGTGCGCTAATC‑GCGCACGACCCGtacttc > 2:1219521/1‑150 (MQ=255) cATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGC‑GATCAGCGCACGACCCGtacttttctct < 2:495147/150‑7 (MQ=38) tGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGa < 2:650892/133‑1 (MQ=255) tGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGa > 1:650892/1‑133 (MQ=255) gAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAg > 2:456381/1‑150 (MQ=255) gAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGATGATA‑GCGCACGACCCGTACTTCTACTTCAg > 2:452074/1‑150 (MQ=255) aGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGAc < 1:142122/132‑1 (MQ=255) aGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGAc > 2:142122/1‑132 (MQ=255) aGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAgg > 1:1504479/1‑150 (MQ=255) cTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCa > 1:1058991/1‑150 (MQ=255) cTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCa > 1:965459/1‑150 (MQ=255) ttGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTa < 1:1467453/150‑1 (MQ=255) ttGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGAGCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTa > 1:1590130/1‑150 (MQ=255) cTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGtacttc > 2:603354/1‑121 (MQ=255) cTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGtacttc < 1:603354/121‑1 (MQ=255) cTGCGGCTTACGGCATGGCTCACCTGAGTCAGGAAACGCCCGTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGGCATTTCCCTGCTTAGCTTc > 1:1826726/1‑150 (MQ=255) gCGGCTTACGGCATGGCTCAGCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAGAGTACGGGTCGTGCGCTGATC‑GCGGACGACCCGTACTTCTACTTCACGTCATTTCCCTGCTTCGCTTCAt < 2:1283629/150‑1 (MQ=255) gCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCAt < 2:1058991/150‑1 (MQ=255) ggCTTACGGCATGGCTCACCTGAGTGCGGAATGGCCCTTGAAAGGCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGTTC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGGTTAGCTTCATGa < 2:587817/150‑1 (MQ=255) ggCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGa > 1:955584/1‑150 (MQ=255) gCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGAt < 1:933987/150‑1 (MQ=255) cTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGAtt > 2:1303563/1‑150 (MQ=255) cTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGAtt < 2:1504479/150‑1 (MQ=255) aCGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAACGTACGGGTCGTGCGCTGATC‑GCGCACGTCCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGaa < 2:1826726/150‑1 (MQ=255) cGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAg < 2:952368/150‑1 (MQ=255) ggCATGGCTCAGCTGAGTGCGAAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGTGCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGc > 2:24942/1‑150 (MQ=255) tGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGCCTGACGCTCAg > 2:409295/1‑150 (MQ=255) tGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAg > 1:226501/1‑150 (MQ=255) ggCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAgg < 2:226501/150‑1 (MQ=255) cTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGAtt < 2:376362/133‑1 (MQ=255) cTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGAtt > 1:376362/1‑133 (MQ=255) cTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAgg < 1:1715763/150‑1 (MQ=255) cGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTcc < 2:129144/108‑1 (MQ=255) cGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTcc > 1:129144/1‑108 (MQ=255) cGGAAAGGCCCTGGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCt < 2:747221/150‑1 (MQ=255) ggAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTg < 2:965459/150‑1 (MQ=255) aaaGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCg > 2:1188499/1‑150 (MQ=255) aGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGt > 2:298969/1‑150 (MQ=255) ggCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTa < 2:773449/150‑1 (MQ=255) gCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAg < 2:1614757/150‑1 (MQ=255) ttGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGATTCTGCGGTAGGCCa > 2:1076108/1‑150 (MQ=255) aaGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAg > 2:1012053/1‑150 (MQ=255) aaGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAg > 1:1706872/1‑150 (MQ=255) cTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGcc > 2:1157588/1‑141 (MQ=255) cTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGcc < 1:1157588/141‑1 (MQ=255) aaGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAg < 2:1437288/150‑1 (MQ=255) gcgcATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTg < 2:969537/103‑1 (MQ=255) gcgcATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTg > 1:969537/1‑103 (MQ=255) ggATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAga > 2:270310/1‑150 (MQ=255) gATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAgac > 1:791339/1‑150 (MQ=255) tCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAgacga < 1:697232/150‑1 (MQ=255) gacgaGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGAcc > 1:1191039/1‑150 (MQ=255) tGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTccc < 1:76007/66‑1 (MQ=255) tGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTccc > 2:76007/1‑66 (MQ=255) agagaAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAg < 1:1323455/112‑1 (MQ=255) agagaAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGATAg > 2:1323455/1‑112 (MQ=255) gagaAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGgc < 1:377902/121‑1 (MQ=255) gagaAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGgc > 2:377902/1‑121 (MQ=255) gagaAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGtgtg < 2:1590130/150‑1 (MQ=255) agaAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTgg > 2:1802610/1‑150 (MQ=255) gaAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGa < 1:1802610/150‑1 (MQ=255) aaaaGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAgg > 2:207061/1‑87 (MQ=255) aaaaGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAgg < 1:207061/87‑1 (MQ=255) aaGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTTATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGcc < 1:1806751/150‑1 (MQ=255) gTACGGGTCGTGCGC‑GATCAGCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCt > 2:349217/1‑150 (MQ=255) tACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAgtg < 1:219810/140‑1 (MQ=255) tACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAgtg > 2:219810/1‑140 (MQ=255) cGGGTCGTGCGC‑GATCAGCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGa < 1:1815854/142‑1 (MQ=255) cGGGTCGTGCGC‑GATCAGCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGa > 2:1815854/1‑142 (MQ=255) gggTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCTCATg < 1:1012053/150‑1 (MQ=255) gggTCGTGCGC‑GATCAGCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGc < 2:414536/95‑1 (MQ=38) gggTCGTGCGC‑GATCAGCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGc > 1:414536/1‑95 (MQ=38) ggTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCTCATgg > 1:1483241/1‑150 (MQ=255) ggTCGTGCGC‑GATCAGCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCTCATgg > 1:860888/1‑150 (MQ=255) tCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCTCATGGAt > 1:1863417/1‑150 (MQ=255) tGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCTCATGGATCGc < 2:955584/150‑1 (MQ=255) cgcTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCTCATGGATCGCaa > 1:634528/1‑150 (MQ=255) gcTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCTCAt < 1:1938087/140‑1 (MQ=255) gcTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCTCAt > 2:1938087/1‑140 (MQ=255) tGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCTCATGGATCGCAACAg < 1:1188499/150‑1 (MQ=255) gATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTCGAAGACGACCAACAGTGTGGAGCCCTCATGGATCGCAACAGc > 2:598944/1‑150 (MQ=255) tC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAgacgac < 1:1308019/115‑1 (MQ=255) tC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAgacgac > 2:1308019/1‑115 (MQ=255) tC‑GCGCACGACCCGTACATCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCTCATGGATCGCAACAGCgg > 2:77675/1‑150 (MQ=255) | AAGTCGGTTTCGTAGCCGGTGTCATGAGCCTCAAAGCTGCATTGGCCTGCGGCTTACGGCATGGCTCACCTGAGTGCGGAAAGGCCCTTGAAAGCCTCAAGCGCATCGGGATCGACGAGTGAGAGAAAAGTACGGGTCGTGCGCTGATC‑GCGCACGACCCGTACTTCTACTTCAGGTCATTTCCCTGCTTAGCTTCATGATTGAAGCTCAGGGATCAGGTGCTTCTGCGGTAGGCCAACAGGCGCAAGGCGTTGAAGACGACCAACAGTGTGGAGCCCTCATGGATCGCAACAGCGG > NC_002947/43313‑43609 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |