Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_002947 1,300,028:1 +G 5.5% coding (156/1608 nt) PP_1134 ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029471,300,0281.G 5.5% 302.4 / 10.5 73coding (156/1608 nt)PP_1134hypothetical protein
Reads supporting (aligned to +/- strand):  ref base . (40/29);  new base G (2/2);  total (42/31)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.32e-01

CGCTCCTGCAGGCCTGCCGGGGCCTGGCCGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCGCGCAGCGCTTCGTCGGGATGGTCCAGGGGCAGCTTCAGTTCGGTGATTCG  >  NC_002947/1299888‑1300177
                                                                                                                                             |                                                                                                                                                     
cgcTCCTGCAGGCCTGCCGGGGCCTGGCCGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTg                                                                                                                                              <  2:441775/150‑1 (MQ=255)
   tCCTGCAGGCCTGCCGGGGCCTGGCCGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGttc                                                                                                                                           >  1:1118056/1‑150 (MQ=255)
   tCCTGCAGGCCTGCCGGGGCCTGGCCGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGttc                                                                                                                                           >  2:279185/1‑150 (MQ=255)
   tCCTGCAGGCCTGCCGGGGCCTGGCCGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGttc                                                                                                                                           >  1:852852/1‑150 (MQ=255)
     cTGCAGGCCTGCCGGGGCCTGGCCGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCt                                                                                                                                               >  2:898258/1‑144 (MQ=255)
     cTGCAGGCCTGCCGGGGCCTGGCCGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCt                                                                                                                                               <  1:898258/144‑1 (MQ=255)
     cTGCAGGCCTGCCGGGGCCTGGCCGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGttc                                                                                                                                           >  2:328938/1‑148 (MQ=255)
     cTGCAGGCCTGCCGGGGCCTGGCCGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGttc                                                                                                                                           <  1:328938/148‑1 (MQ=255)
      tGCAGGCCTGCCGGGGCCTGGCCGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGCGAGCT‑GCTGttcatc                                                                                                                                        <  1:753556/150‑1 (MQ=255)
      tGCAGGCCTGCCGGGGCCTGGCCGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGttcttc                                                                                                                                        >  1:1914372/1‑150 (MQ=255)
       gCAGGCCTGCCGGGGCCTGGCCGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACagc‑agc                                                                                                                                                    <  2:932504/137‑1 (MQ=255)
       gCAGGCCTGCCGGGGCCTGGCCGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACagc‑agc                                                                                                                                                    >  1:932504/1‑137 (MQ=255)
         aGGCCTGCCGGGGCCTGGCCGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCCGTTcttcttt                                                                                                                                     >  2:1750117/1‑149 (MQ=255)
           gCCTGCCGGGGCCTGGCCGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTgcg                                                                                                                                   >  1:1105360/1‑150 (MQ=255)
           gCCTGCCGGGGCCTGGCCGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTgcg                                                                                                                                   >  2:670210/1‑150 (MQ=255)
             cTGCCGGGGCCTGGCCGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTgcgcg                                                                                                                                 >  1:1163700/1‑150 (MQ=255)
                     gCCTGGCCGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAg                                                                                                                         <  1:279185/150‑1 (MQ=255)
                           ccGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTgcgc                                                                                                                   >  2:1379036/1‑150 (MQ=255)
                             gacgaACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCtt                                                                                                                 >  2:1811783/1‑150 (MQ=255)
                              acgaACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTg                                                                                                                <  2:1163700/150‑1 (MQ=255)
                                gaACTTGTAGTTGAAGTCTGGGGCCGGGCCGCTGTTGCGATCCTCGGCGACCTTGCTGAGCCGCTCGGCATCGTTGCTGGCTTCCAGGTCGAGCGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGaa                                                                                                              <  1:884987/150‑1 (MQ=255)
                                   cTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAg                                                                                                           >  1:791687/1‑150 (MQ=255)
                                    ttGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGttcttc                                                                                                                                        >  1:740666/1‑120 (MQ=255)
                                    ttGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGttcttc                                                                                                                                        <  2:740666/120‑1 (MQ=255)
                                    ttGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAgg                                                                                                          >  1:204630/1‑150 (MQ=255)
                                    ttGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAgg                                                                                                          <  2:1396395/150‑1 (MQ=255)
                                    ttGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAgg                                                                                                          <  1:1187035/150‑1 (MQ=255)
                                    ttGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAgg                                                                                                          <  2:1118056/150‑1 (MQ=255)
                                          gTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTgcgc                                                                                                                                  >  2:1554113/1‑120 (MQ=255)
                                          gTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTgcgc                                                                                                                                  <  1:1554113/120‑1 (MQ=255)
                                          gTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAg                                                                                                    >  2:1372085/1‑150 (MQ=255)
                                            gACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCt                                                                                                  <  2:1914372/150‑1 (MQ=255)
                                                  tGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAg                                                                                            >  1:1090227/1‑150 (MQ=255)
                                                   ggggCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGt                                                                                           >  2:1399998/1‑150 (MQ=255)
                                                           gccgATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCtcgtc                                                                                   >  2:1538370/1‑150 (MQ=255)
                                                             cgATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTcgc                                                                                 <  2:1579515/150‑1 (MQ=255)
                                                                      gATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGCGAGCT‑GCTGttcat                                                                                                                                         >  1:1498664/1‑83 (MQ=255)
                                                                      gATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGCGAGCT‑GCTGttcat                                                                                                                                         <  2:1498664/85‑3 (MQ=255)
                                                                      gATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCa                                                                        >  2:628738/1‑150 (MQ=255)
                                                                      gATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCa                                                                        >  1:140316/1‑150 (MQ=255)
                                                                       atcatcGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAg                                                                       <  1:1811783/150‑1 (MQ=255)
                                                                       atcatcGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAg                                                                       <  2:852852/150‑1 (MQ=255)
                                                                          atcGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGgcg                                                                    >  2:917975/1‑150 (MQ=255)
                                                                           tcGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGgcgc                                                                   <  1:533077/150‑1 (MQ=255)
                                                                             ggCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCATGCGCTg                                                                 >  2:764447/1‑150 (MQ=255)
                                                                             ggCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTg                                                                 <  2:1105360/150‑1 (MQ=255)
                                                                              gCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTgg                                                                >  2:654201/1‑150 (MQ=255)
                                                                              gCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTgg                                                                >  2:868037/1‑150 (MQ=255)
                                                                                gAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGAc                                                              >  2:1264598/1‑150 (MQ=255)
                                                                                gAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGAc                                                              <  1:670210/150‑1 (MQ=255)
                                                                                      gCTGAGCAGCTCGGGCTCGTTGCTGGCTTCCAGAGCGATGGTGTAGAGGAACAGC‑AGCTCGCTGGTCTGCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGc                                                        <  1:1750117/150‑1 (MQ=255)
                                                                                        tGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCtt                                                      >  2:617214/1‑150 (MQ=255)
                                                                                        tGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACACC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCtt                                                      >  1:1594329/1‑150 (MQ=255)
                                                                                          agcagcTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTg                                                                                                       >  2:1681906/1‑99 (MQ=255)
                                                                                          agcagcTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTg                                                                                                       <  1:1681906/99‑1 (MQ=255)
                                                                                          agcagcTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGt                                                                                           <  1:1911804/111‑1 (MQ=255)
                                                                                          agcagcTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGAGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGt                                                                                           >  2:1911804/1‑111 (MQ=255)
                                                                                           gcagcTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTcgc                                                   <  2:1090227/150‑1 (MQ=255)
                                                                                             agcTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTTGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCgcgc                                                 <  2:1088354/150‑1 (MQ=255)
                                                                                               cTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCGCGCAg                                               >  2:1238815/1‑150 (MQ=255)
                                                                                                tCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCGCGCTGTTCTTCTTGCGCGGATCGTAGCCGTGTTCCAGCAGGTTGAACCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGAGGGCTTCGCGCAgc                                              >  1:1592737/1‑150 (MQ=255)
                                                                                                     cTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCATGCGCTGGACGATGGCTTCGCGCAGCGCTtc                                         <  1:764447/150‑1 (MQ=255)
                                                                                                     cTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCGCGCAGCGCTtc                                         <  1:1372085/150‑1 (MQ=255)
                                                                                                     cTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCGCGCAGCGCTtc                                         >  1:508000/1‑150 (MQ=255)
                                                                                                        gTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCGCGCAGCGCTtcgtc                                      <  2:508000/150‑1 (MQ=255)
                                                                                                               gCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCGCGCAGCGCTTCGTCGGGATgg                               <  1:868037/150‑1 (MQ=255)
                                                                                                                 ttCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCGCGCAGCGCTTCGTCGGGATgg                               <  1:906240/148‑1 (MQ=255)
                                                                                                                 ttCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCGCGCAGCGCTTCGTCGGGATgg                               >  2:906240/1‑148 (MQ=255)
                                                                                                                                gtAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCGCGCAGCGCTTCGTCGGGATGGTCCAGGGGCAGCTTCAg              <  1:654201/150‑1 (MQ=255)
                                                                                                                                gtAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCGCGCAGCGCTTCGTCGGGATGGTCCAGGGGCAGCTTCAg              >  2:1159381/1‑150 (MQ=255)
                                                                                                                                 aagaagAACAGCGAGCT‑GCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCGCGCAGCGCTTCGTCGGGATGGTCCAGGGGCAGCTTCAGt             >  1:979278/6‑150 (MQ=255)
                                                                                                                                   gATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCGCGCAGCGCTTCGTCGGGATGGTCCAGGGGCAGCTTCAGTTc           >  2:743124/1‑150 (MQ=255)
                                                                                                                                    aTGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCGCGCAGCGCTTCGTCGGGATGGTCCAGGGGCAGCTTCAGTTCg          >  1:1797156/1‑150 (MQ=255)
                                                                                                                                    aTGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCGCGCAGCGCTTCGTCGGGATGGTCCAGGGGCAGCTTCAGTTCg          >  2:890300/1‑150 (MQ=255)
                                                                                                                                    aTGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCGCCCAGCGCTTCGTCGGGATGGTCCAGGGGCAGCTTCAGTTCg          >  1:1288493/1‑150 (MQ=255)
                                                                                                                                          agc‑agcTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCgcgc                                                 >  2:1841266/1‑105 (MQ=255)
                                                                                                                                          agc‑agcTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCgcgc                                                 <  1:1841266/105‑1 (MQ=255)
                                                                                                                                            c‑agcTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCGCGCAGCGCTTCGTCGGGATGGTCCAGGGGCAGCTTCAGTTCGGTGATTCg  >  1:930798/1‑150 (MQ=255)
                                                                                                                                             |                                                                                                                                                     
CGCTCCTGCAGGCCTGCCGGGGCCTGGCCGACGAACTTGTAGGTGACGTCTGGGGCCGGGCCGATGTTGCGATCATCGGCGAACTTGCTGAGCAGCTCGGCCTCGTTGCTGGCTTCCAGATCGATGGTGTAGATGAACAGC‑AGCTCGCTGTTCTTCTTGCGCGCATCGTAGCTGCGCTTGAACAGGTTGAAGCTGAGCAGTTGCTCGTCGCGGATGCCCAGGCGCTGGACGATGGCTTCGCGCAGCGCTTCGTCGGGATGGTCCAGGGGCAGCTTCAGTTCGGTGATTCG  >  NC_002947/1299888‑1300177

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑