| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_002947 | 1,993,644:1 | +T | 9.0% | intergenic (+39/+59) | PP_1780 → / ← PP_1781 | mannosyltransferase/acyltransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 1,993,644 | 1 | . | T | 9.0% | 327.3 / 28.7 | 89 | intergenic (+39/+59) | PP_1780/PP_1781 | mannosyltransferase/acyltransferase |
| Reads supporting (aligned to +/- strand): ref base . (41/40); new base T (3/5); total (44/45) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.27e-01 | |||||||||||
GATGCCTTGGCTACATTGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTGGGTCAACAGGCTTAGCG > NC_002947/1993497‑1993791 | gaTGCCTTGGCTACATTGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTTATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGgc‑gc > 2:927457/1‑150 (MQ=255) aTGCCTTGGCTACATTGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCa > 2:1549756/1‑150 (MQ=255) cTTGGCTACATTGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCg < 2:1930376/150‑1 (MQ=255) ggCTACATTGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCAc > 1:1843601/1‑150 (MQ=255) aCATTGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGCTGC‑GCCGCACTGCa < 2:473701/150‑1 (MQ=255) aCATTGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCCGCAGTGCGGC‑GCAGCCGCACTGCa > 2:1897939/1‑150 (MQ=255) aCATTGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGCCGCCTGCTCAAGCGCCCTGATTGCGTACGCGTAGTTTTCCTTGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCa < 1:1306917/150‑1 (MQ=255) ttGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGCTGC‑GCCGCACTGc < 2:1273322/146‑1 (MQ=255) ttGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGCTGC‑GCCGCACTGc > 1:1273322/1‑146 (MQ=255) ttGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAggg > 1:451054/1‑150 (MQ=255) aGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCttt > 1:1788298/1‑150 (MQ=255) gTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCtttt > 2:1662863/1‑150 (MQ=255) gTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCtttt > 2:1662868/1‑150 (MQ=255) tGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTg > 1:1131828/1‑150 (MQ=255) gTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCata < 1:698383/150‑1 (MQ=255) aGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGAc < 2:21321/150‑1 (MQ=255) gCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGATTTTGCCATATGACt > 2:52437/1‑150 (MQ=255) gAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGt < 1:1662863/150‑1 (MQ=255) gAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGt < 1:1662868/150‑1 (MQ=255) tAAAACGCCTGGTTTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTTCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑TGCGCCGCACTGCa > 2:1070403/1‑124 (MQ=255) tAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTTCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGCTGC‑GCCGCACTGCa < 1:1070403/124‑1 (MQ=255) aaaaCGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAg < 2:1514784/150‑1 (MQ=255) aaaaCGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAg < 1:713333/150‑1 (MQ=255) cGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCAc > 2:156516/1‑150 (MQ=255) cTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCa < 1:79109/150‑1 (MQ=255) cTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGATTTTGCCATATGACTTGTATGAGGCACGCa < 1:52437/150‑1 (MQ=255) tGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCa > 2:834078/1‑115 (MQ=255) tGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCa < 1:834078/115‑1 (MQ=255) tgtTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGa < 2:221010/138‑1 (MQ=255) tgtTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGa > 1:221010/1‑138 (MQ=255) ttGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAAc > 2:1427602/1‑150 (MQ=255) ggATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAAcgc < 1:1549756/150‑1 (MQ=255) gATGTTACGGAAAATACTCAGCTGAAGCATAAGGAGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAAcgcg > 1:646075/1‑150 (MQ=255) aTGTTACGGAAAATACTCAGCTGAAGACTACGCCCTCTGCTTAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACgcgc < 2:646075/150‑1 (MQ=255) ttACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTa > 1:467020/1‑150 (MQ=255) cGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATcc > 2:184297/1‑150 (MQ=255) tACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAg > 1:935857/1‑94 (MQ=255) tACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAg < 2:935857/94‑1 (MQ=255) aCTCAGCTGACGCTTAAGTCGCCTGCTCAAGCGCACTGATTGCGTACGCTAGGCAATCCACCACCTCTGCAGTTCGCA‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACgg < 1:136961/150‑1 (MQ=255) aCTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACgg < 2:799288/150‑1 (MQ=255) cTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACggg < 2:1802897/150‑1 (MQ=255) tCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑TGCGCCGCACTGCAg > 2:1199554/1‑91 (MQ=38) tCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑TGCGCCGCACTGCAg < 1:1199554/91‑1 (MQ=38) tCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGc > 2:251618/1‑150 (MQ=255) tCAGCTGAAGCATAAGGCGCCTACTCAAGCGCACTGATTGGGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGc > 1:1844637/1‑150 (MQ=255) gCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCGGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGcaca > 2:805557/1‑150 (MQ=255) tGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGt < 1:1902510/107‑1 (MQ=255) tGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGt > 2:1902510/1‑107 (MQ=255) gcgcCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCt > 1:1461156/1‑150 (MQ=255) cgcCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTg < 2:467020/150‑1 (MQ=255) ccTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGgc > 2:1764654/1‑150 (MQ=255) gCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCTGCTACGGGCACAGCCTGGCGACGCTGGCGCa < 2:780269/150‑1 (MQ=255) tCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGa > 1:1046963/1‑150 (MQ=255) gcACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCGCTATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGt < 1:433177/150‑1 (MQ=255) gcACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACgcgc < 1:1539626/104‑1 (MQ=255) gcACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACgcgc > 2:1539626/1‑104 (MQ=255) gcACTGATTGCGTACGCTTGGCCACCCATGAACCCTGCAGTGCGGG‑TCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGGAAACGCGCTTATCCGTCTACGGGCACAGCCTGGGGACGCTGGCGCAGATGGCGt > 2:820883/1‑150 (MQ=255) cACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGtt < 2:1788298/150‑1 (MQ=255) aCTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAg > 1:1405565/1‑85 (MQ=255) aCTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCCGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAg < 2:1405565/85‑1 (MQ=255) cTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGa < 1:156516/150‑1 (MQ=255) tGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTgg > 1:1789319/1‑125 (MQ=255) tGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTgg < 2:1789319/125‑1 (MQ=255) tGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCgg < 1:1764654/150‑1 (MQ=255) tGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCgg < 1:1680177/150‑1 (MQ=255) tGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCgg < 2:1131828/150‑1 (MQ=255) gTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCg > 1:48108/1‑150 (MQ=255) gTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCg > 1:1334915/1‑150 (MQ=255) aCGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACgcgc < 1:1038959/91‑1 (MQ=255) aCGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACgcgc > 2:1038959/1‑91 (MQ=255) cGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTc < 2:1334915/150‑1 (MQ=255) gCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTcc > 2:1289658/1‑150 (MQ=255) gCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCCACGCGcatg < 2:972617/108‑3 (MQ=255) gCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCCACGCGcatg > 1:972617/1‑106 (MQ=255) catGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTg < 2:1046963/150‑1 (MQ=255) atGACCCCTGCAATGCCGA‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTgg > 2:119891/1‑150 (MQ=255) atGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTgg < 1:1427602/150‑1 (MQ=255) atGAACCCCGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAACCAGCGGTgg < 1:1897939/150‑1 (MQ=255) tGAACCCTGCAGGGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTggg < 1:1616959/150‑1 (MQ=255) aaCCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTGGGTc > 1:819092/1‑150 (MQ=255) cccTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCgg > 2:1168140/1‑142 (MQ=255) cccTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCgg < 1:1168140/142‑1 (MQ=255) ccTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTGGGTCAAc < 1:184297/150‑1 (MQ=255) cTGCAGTGCGGC‑TGCGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTGGGTCAACa > 1:727084/1‑150 (MQ=255) tGCAGTGCGGCTGC‑GCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACggg < 1:608357/84‑1 (MQ=38) tGCAGTGCGGCTGC‑GCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACggg > 2:608357/1‑84 (MQ=38) tGCAGTGCGGCTGC‑GCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGa > 2:1114012/1‑118 (MQ=255) tGCAGTGCGGCTGC‑GCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGa < 1:1114012/118‑1 (MQ=255) tGCAGTGCGGC‑TGCGCCGCACTGCAGGGCTTTTGCCATAGGAGTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCACCGGTGGGTCAACAg > 2:806231/1‑150 (MQ=255) tGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTGGGTCAACAg > 2:43829/1‑150 (MQ=255) ggc‑gCAGCCGCACTGCAGGGCTGTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTGGGTCAACAGGCTTAGCg < 1:183630/150‑1 (MQ=255) | GATGCCTTGGCTACATTGGAGTGAAAGTGCAGCTGAACTAAAACGCCTGGTGTTGGATGTTACGGAAAATACTCAGCTGAAGCATAAGGCGCCTGCTCAAGCGCACTGATTGCGTACGCTTGGCCATCCATGAACCCTGCAGTGCGGC‑GCAGCCGCACTGCAGGGCTTTTGCCATATGACTTGTATGAGGCACGCAGTAAACGCGCTTATCCGGCTACGGGCACAGCCTGGCGACGCTGGCGCAGATAGCGTTGAGCCGGGCGTTCCAGCCAGCGGTGGGTCAACAGGCTTAGCG > NC_002947/1993497‑1993791 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |